Wall clock time and date at job start Wed Apr 1 2020 03:54:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09004 * 109.46856 * 2 1
4 4 O 1.45201 * 109.46808 * 119.99516 * 2 1 3
5 5 C 1.34229 * 117.00245 * 270.00147 * 4 2 1
6 6 O 1.20828 * 120.00041 * 0.02562 * 5 4 2
7 7 C 1.50698 * 120.00026 * 180.02562 * 5 4 2
8 8 H 1.08997 * 115.54658 * 332.13694 * 7 5 4
9 9 C 1.53004 * 117.49799 * 186.43315 * 7 5 4
10 10 C 1.52999 * 60.00004 * 252.50867 * 9 7 5
11 11 C 1.52995 * 117.52031 * 252.52030 * 10 9 7
12 12 C 1.50702 * 117.49817 * 107.48731 * 10 9 7
13 13 C 1.38239 * 119.99698 * 227.90772 * 12 10 9
14 14 C 1.38239 * 119.99563 * 179.76811 * 13 12 10
15 15 C 1.38240 * 119.99888 * 0.50649 * 14 13 12
16 16 C 1.38235 * 119.99923 * 359.75088 * 15 14 13
17 17 C 1.38228 * 120.00201 * 359.97438 * 16 15 14
18 18 C 1.50690 * 109.47413 * 239.99801 * 2 1 3
19 19 O 1.21283 * 120.00143 * 250.34982 * 18 2 1
20 20 N 1.34781 * 119.99902 * 70.35582 * 18 2 1
21 21 C 1.46497 * 120.00144 * 4.86243 * 20 18 2
22 22 C 1.46501 * 119.99529 * 184.86397 * 20 18 2
23 23 C 1.50701 * 109.47349 * 90.00281 * 22 20 18
24 24 H 1.08001 * 119.99530 * 359.97438 * 23 22 20
25 25 C 1.37877 * 120.00137 * 180.02562 * 23 22 20
26 26 N 1.31518 * 119.99914 * 359.97438 * 25 23 22
27 27 Si 1.86797 * 119.99918 * 179.97438 * 25 23 22
28 28 H 1.48498 * 109.47163 * 359.97438 * 27 25 23
29 29 H 1.48499 * 109.47217 * 119.99810 * 27 25 23
30 30 H 1.48500 * 109.46932 * 239.99719 * 27 25 23
31 31 H 1.09000 * 109.47125 * 66.84343 * 1 2 3
32 32 H 1.08998 * 109.47710 * 306.84002 * 1 2 3
33 33 H 1.09000 * 109.47109 * 186.83728 * 1 2 3
34 34 H 1.09003 * 117.50142 * 359.97438 * 9 7 5
35 35 H 1.08996 * 117.50008 * 145.01820 * 9 7 5
36 36 H 1.08994 * 109.47534 * 128.62466 * 11 10 9
37 37 H 1.09004 * 109.47283 * 248.63224 * 11 10 9
38 38 H 1.09006 * 109.47103 * 8.62543 * 11 10 9
39 39 H 1.07995 * 120.00287 * 0.02562 * 13 12 10
40 40 H 1.08000 * 120.00076 * 180.23411 * 14 13 12
41 41 H 1.08001 * 119.99662 * 179.71995 * 15 14 13
42 42 H 1.08005 * 119.99554 * 179.97438 * 16 15 14
43 43 H 1.08003 * 120.00406 * 179.97438 * 17 16 15
44 44 H 1.08995 * 109.46874 * 95.39152 * 21 20 18
45 45 H 1.09005 * 109.46797 * 215.39123 * 21 20 18
46 46 H 1.08994 * 109.46990 * 335.39332 * 21 20 18
47 47 H 1.09007 * 109.46839 * 209.99666 * 22 20 18
48 48 H 1.08994 * 109.47487 * 329.99420 * 22 20 18
49 49 H 0.97000 * 119.99900 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0139 -0.6844 1.1856
5 6 2.2170 0.0641 2.2812
6 8 1.9972 1.2519 2.2506
7 6 2.7191 -0.5769 3.5493
8 1 2.4578 -1.6269 3.6806
9 6 2.7873 0.2969 4.8034
10 6 4.0749 -0.1137 4.0862
11 6 4.9602 -1.1598 4.7662
12 6 4.8060 0.9486 3.3063
13 6 5.2300 0.6902 2.0162
14 6 5.8963 1.6663 1.2991
15 6 6.1480 2.8971 1.8760
16 6 5.7287 3.1536 3.1680
17 6 5.0573 2.1796 3.8830
18 6 2.0324 -0.7104 -1.2303
19 8 2.5675 -1.7940 -1.1289
20 7 1.8871 -0.1415 -2.4435
21 6 1.3383 1.2121 -2.5569
22 6 2.2780 -0.8768 -3.6488
23 6 1.1011 -1.6684 -4.1582
24 1 0.1566 -1.6281 -3.6360
25 6 1.2305 -2.4448 -5.2902
26 7 2.3808 -2.4943 -5.9257
27 14 -0.2281 -3.4266 -5.9211
28 1 -1.3973 -3.2016 -5.0337
29 1 -0.5611 -2.9876 -7.3001
30 1 0.1147 -4.8714 -5.9308
31 1 -0.3633 0.4041 -0.9449
32 1 -0.3634 0.6161 0.8224
33 1 -0.3633 -1.0204 0.1223
34 1 2.4694 1.3354 4.7113
35 1 2.5708 -0.1782 5.7602
36 1 5.1876 -1.9580 4.0597
37 1 5.8876 -0.6918 5.0965
38 1 4.4362 -1.5750 5.6271
39 1 5.0369 -0.2727 1.5670
40 1 6.2243 1.4658 0.2898
41 1 6.6726 3.6581 1.3173
42 1 5.9256 4.1151 3.6187
43 1 4.7300 2.3798 4.8925
44 1 2.1550 1.9318 -2.6119
45 1 0.7300 1.2831 -3.4586
46 1 0.7217 1.4283 -1.6845
47 1 2.6011 -0.1724 -4.4154
48 1 3.0968 -1.5556 -3.4108
49 1 2.4717 -3.0402 -6.7223
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000884624222.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:54:27
Heat of formation + Delta-G solvation = -81.677376 kcal
Electronic energy + Delta-G solvation = -30937.186029 eV
Core-core repulsion = 26829.816179 eV
Total energy + Delta-G solvation = -4107.369849 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.13 seconds
Orbital eigenvalues (eV)
-42.18093 -41.00394 -40.15377 -38.41344 -37.26217 -36.72967 -34.90505 -33.12273
-31.85354 -31.71229 -29.76690 -29.57642 -27.68786 -26.60694 -25.69659 -24.12731
-24.03389 -23.29069 -21.57592 -20.56660 -20.41651 -19.21440 -18.72239 -18.22933
-17.73663 -17.38416 -17.22368 -16.83479 -16.32264 -16.17629 -15.88370 -15.67223
-15.30729 -14.93855 -14.88994 -14.45599 -14.34642 -14.28591 -14.00239 -13.81212
-13.70811 -13.64629 -13.58476 -13.36021 -13.10416 -13.09092 -12.88934 -12.75668
-12.66603 -12.49588 -12.23469 -12.11536 -12.05458 -11.95510 -11.71358 -11.62452
-11.48992 -10.95699 -10.67248 -10.66092 -9.88213 -9.69724 -9.56441 -8.25271
-6.40291 0.35568 0.43433 0.97053 1.25405 1.36253 1.38754 1.49774
1.55863 2.28542 2.41053 2.61198 2.80030 3.04945 3.35438 3.40501
3.52716 3.62987 3.67190 3.78687 3.84630 4.02698 4.09164 4.14999
4.20387 4.23228 4.46407 4.51997 4.54629 4.59241 4.63402 4.67347
4.78465 4.81264 4.88160 4.89974 4.91202 5.02485 5.04700 5.07839
5.11885 5.16816 5.29258 5.31765 5.48681 5.53184 5.57190 5.59905
5.75274 6.00570 6.06013 6.50086 6.65908 6.68538 7.15875 7.33005
8.82697
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015619 B = 0.002793 C = 0.002649
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1792.266164 B =10024.092163 C =10568.374202
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.083 3.917
3 H 0.113 0.887
4 O -0.344 6.344
5 C 0.489 3.511
6 O -0.519 6.519
7 C -0.180 4.180
8 H 0.151 0.849
9 C -0.104 4.104
10 C -0.057 4.057
11 C -0.110 4.110
12 C -0.062 4.062
13 C -0.134 4.134
14 C -0.136 4.136
15 C -0.125 4.125
16 C -0.120 4.120
17 C -0.106 4.106
18 C 0.502 3.498
19 O -0.577 6.577
20 N -0.599 5.599
21 C 0.064 3.936
22 C 0.260 3.740
23 C -0.545 4.545
24 H 0.058 0.942
25 C 0.008 3.992
26 N -0.928 5.928
27 Si 0.970 3.030
28 H -0.265 1.265
29 H -0.269 1.269
30 H -0.282 1.282
31 H 0.099 0.901
32 H 0.093 0.907
33 H 0.065 0.935
34 H 0.104 0.896
35 H 0.150 0.850
36 H 0.057 0.943
37 H 0.073 0.927
38 H 0.093 0.907
39 H 0.095 0.905
40 H 0.117 0.883
41 H 0.141 0.859
42 H 0.152 0.848
43 H 0.147 0.853
44 H 0.069 0.931
45 H 0.080 0.920
46 H 0.095 0.905
47 H 0.030 0.970
48 H -0.001 1.001
49 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.964 12.156 24.558 27.473
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.025 3.975
3 H 0.131 0.869
4 O -0.260 6.260
5 C 0.334 3.666
6 O -0.408 6.408
7 C -0.199 4.199
8 H 0.168 0.832
9 C -0.140 4.140
10 C -0.058 4.058
11 C -0.167 4.167
12 C -0.062 4.062
13 C -0.152 4.152
14 C -0.154 4.154
15 C -0.143 4.143
16 C -0.137 4.137
17 C -0.124 4.124
18 C 0.289 3.711
19 O -0.457 6.457
20 N -0.331 5.331
21 C -0.078 4.078
22 C 0.139 3.861
23 C -0.583 4.583
24 H 0.076 0.924
25 C -0.191 4.191
26 N -0.567 5.567
27 Si 0.794 3.206
28 H -0.189 1.189
29 H -0.194 1.194
30 H -0.208 1.208
31 H 0.117 0.883
32 H 0.112 0.888
33 H 0.084 0.916
34 H 0.123 0.877
35 H 0.168 0.832
36 H 0.076 0.924
37 H 0.092 0.908
38 H 0.112 0.888
39 H 0.113 0.887
40 H 0.135 0.865
41 H 0.159 0.841
42 H 0.169 0.831
43 H 0.165 0.835
44 H 0.088 0.912
45 H 0.099 0.901
46 H 0.113 0.887
47 H 0.048 0.952
48 H 0.017 0.983
49 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 2.255 11.894 24.386 27.226
hybrid contribution -0.364 -0.866 -1.502 1.772
sum 1.891 11.028 22.884 25.473
Atomic orbital electron populations
1.22244 0.89906 1.04247 1.05435 1.22450 0.97334 0.96644 0.81116
0.86928 1.86619 1.76928 1.42404 1.20015 1.23178 0.73315 0.85292
0.84846 1.90597 1.48955 1.16858 1.84406 1.22162 1.04492 1.02823
0.90390 0.83152 1.23524 0.95965 1.00388 0.94118 1.20441 0.87778
0.97614 0.99938 1.21423 0.99067 0.95917 1.00283 1.19170 0.98820
0.94896 0.93357 1.21025 0.99867 0.99073 0.95269 1.21299 0.99463
0.94590 1.00055 1.21440 1.00051 0.96588 0.96222 1.21502 0.97680
1.00179 0.94366 1.21231 0.98234 0.91946 1.00964 1.20618 0.79558
0.85858 0.85103 1.90652 1.44994 1.23382 1.86683 1.48038 1.61930
1.17397 1.05772 1.22213 0.99778 0.81155 1.04634 1.18845 0.95106
0.91131 0.81006 1.21721 0.97665 1.28284 1.10651 0.92381 1.25883
0.99140 0.97431 0.96681 1.70064 1.25943 1.41067 1.19667 0.85326
0.78849 0.77952 0.78441 1.18868 1.19360 1.20830 0.88261 0.88810
0.91568 0.87732 0.83191 0.92440 0.90803 0.88834 0.88703 0.86528
0.84111 0.83077 0.83511 0.91224 0.90149 0.88661 0.95247 0.98282
0.92327
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.56 9.09 71.98 0.65 -3.91 16
2 C 0.08 2.89 2.13 29.85 0.06 2.96 16
3 H 0.11 3.64 6.48 -2.38 -0.02 3.63 16
4 O -0.34 -12.31 9.44 -45.11 -0.43 -12.73 16
5 C 0.49 14.53 6.13 71.24 0.44 14.96 16
6 O -0.52 -16.34 15.04 21.96 0.33 -16.01 16
7 C -0.18 -3.83 6.01 -11.54 -0.07 -3.90 16
8 H 0.15 2.74 8.14 -2.39 -0.02 2.72 16
9 C -0.10 -1.47 9.07 30.60 0.28 -1.20 16
10 C -0.06 -1.05 2.18 -52.93 -0.12 -1.17 16
11 C -0.11 -1.50 9.84 71.98 0.71 -0.79 16
12 C -0.06 -1.43 4.00 -19.86 -0.08 -1.51 16
13 C -0.13 -3.80 8.71 22.27 0.19 -3.60 16
14 C -0.14 -3.60 10.05 22.27 0.22 -3.38 16
15 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16
16 C -0.12 -2.18 10.05 22.27 0.22 -1.95 16
17 C -0.11 -2.02 9.38 22.27 0.21 -1.81 16
18 C 0.50 22.81 7.01 87.65 0.61 23.42 16
19 O -0.58 -32.24 16.09 15.54 0.25 -31.99 16
20 N -0.60 -26.56 2.86 -851.14 -2.43 -28.99 16
21 C 0.06 2.01 9.80 127.77 1.25 3.26 16
22 C 0.26 14.30 5.22 85.63 0.45 14.75 16
23 C -0.54 -31.49 9.39 25.60 0.24 -31.25 16
24 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16
25 C 0.01 0.45 5.46 84.65 0.46 0.91 16
26 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16
27 Si 0.97 44.86 29.54 68.60 2.03 46.89 16
28 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16
29 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16
30 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16
31 H 0.10 2.58 5.89 -2.39 -0.01 2.56 16
32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16
33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16
34 H 0.10 1.70 7.60 -2.39 -0.02 1.69 16
35 H 0.15 1.02 8.05 -2.39 -0.02 1.00 16
36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
37 H 0.07 0.94 8.08 -2.38 -0.02 0.92 16
38 H 0.09 0.77 7.90 -2.38 -0.02 0.75 16
39 H 0.09 3.10 8.06 -2.91 -0.02 3.07 16
40 H 0.12 3.05 8.06 -2.91 -0.02 3.03 16
41 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16
42 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16
43 H 0.15 1.96 7.99 -2.91 -0.02 1.94 16
44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
45 H 0.08 2.50 8.11 -2.38 -0.02 2.48 16
46 H 0.10 2.39 4.35 -2.39 -0.01 2.38 16
47 H 0.03 1.63 8.07 -2.38 -0.02 1.61 16
48 H 0.00 -0.06 7.36 -2.39 -0.02 -0.08 16
49 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16
Total: -1.00 -80.46 410.08 6.94 -73.52
By element:
Atomic # 1 Polarization: 21.05 SS G_CDS: 0.94 Total: 22.00 kcal
Atomic # 6 Polarization: -2.58 SS G_CDS: 5.97 Total: 3.39 kcal
Atomic # 7 Polarization: -82.91 SS G_CDS: -2.15 Total: -85.06 kcal
Atomic # 8 Polarization: -60.89 SS G_CDS: 0.15 Total: -60.73 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal
Total: -80.46 6.94 -73.52 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000884624222.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -8.157 kcal
(2) G-P(sol) polarization free energy of solvation -80.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.942 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.520 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.677 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds