Wall clock time and date at job start Wed Apr 1 2020 03:34:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09005 * 109.47011 * 2 1
4 4 C 1.50701 * 109.47060 * 240.00019 * 2 1 3
5 5 H 1.07997 * 120.00031 * 239.99939 * 4 2 1
6 6 C 1.37880 * 119.99989 * 60.00358 * 4 2 1
7 7 N 1.31514 * 120.00127 * 359.97438 * 6 4 2
8 8 Si 1.86803 * 120.00041 * 180.02562 * 6 4 2
9 9 H 1.48504 * 109.47140 * 59.99474 * 8 6 4
10 10 H 1.48491 * 109.47145 * 179.97438 * 8 6 4
11 11 H 1.48502 * 109.46474 * 299.99613 * 8 6 4
12 12 C 1.50695 * 109.47151 * 119.99871 * 2 1 3
13 13 O 1.21284 * 120.00003 * 24.56355 * 12 2 1
14 14 N 1.34775 * 120.00028 * 204.83764 * 12 2 1
15 15 C 1.46931 * 120.63151 * 4.05122 * 14 12 2
16 16 C 1.52745 * 109.03474 * 233.62296 * 15 14 12
17 17 C 1.52896 * 109.42037 * 305.77696 * 16 15 14
18 18 C 1.52943 * 109.76343 * 60.97720 * 17 16 15
19 19 C 1.46927 * 120.62747 * 184.32939 * 14 12 2
20 20 C 1.53296 * 109.53194 * 181.16466 * 17 16 15
21 21 C 1.53093 * 108.28454 * 184.55198 * 20 17 16
22 22 H 1.09005 * 109.43320 * 72.07815 * 21 20 17
23 23 O 1.42901 * 109.40027 * 191.96640 * 21 20 17
24 24 C 1.50772 * 109.69654 * 312.01558 * 21 20 17
25 25 C 1.38509 * 118.73438 * 197.40129 * 24 21 20
26 26 C 1.38108 * 120.32168 * 180.42928 * 25 24 21
27 27 C 1.38288 * 119.98705 * 359.97438 * 26 25 24
28 28 C 1.37978 * 119.95707 * 359.95116 * 27 26 25
29 29 C 1.38378 * 121.45233 * 17.70962 * 24 21 20
30 30 O 1.35878 * 121.78703 * 359.48728 * 29 24 21
31 31 H 1.09009 * 109.47205 * 64.80009 * 1 2 3
32 32 H 1.08996 * 109.47384 * 184.80967 * 1 2 3
33 33 H 1.09004 * 109.47325 * 304.81062 * 1 2 3
34 34 H 0.97002 * 120.00613 * 179.97438 * 7 6 4
35 35 H 1.09004 * 109.57901 * 353.46218 * 15 14 12
36 36 H 1.08996 * 109.58716 * 113.88335 * 15 14 12
37 37 H 1.08998 * 109.55859 * 185.73095 * 16 15 14
38 38 H 1.08996 * 109.34711 * 65.70123 * 16 15 14
39 39 H 1.08998 * 109.49562 * 178.89887 * 18 17 16
40 40 H 1.09000 * 109.49544 * 58.81001 * 18 17 16
41 41 H 1.09004 * 109.59125 * 246.07948 * 19 14 12
42 42 H 1.09001 * 109.59454 * 6.51690 * 19 14 12
43 43 H 1.09005 * 109.70076 * 304.24526 * 20 17 16
44 44 H 1.09000 * 109.70351 * 64.84977 * 20 17 16
45 45 H 0.96699 * 114.00091 * 180.20062 * 23 21 20
46 46 H 1.08000 * 119.84348 * 0.44682 * 25 24 21
47 47 H 1.08000 * 120.00602 * 180.02562 * 26 25 24
48 48 H 1.08000 * 120.02496 * 180.02562 * 27 26 25
49 49 H 1.07995 * 119.89554 * 180.02562 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6993 -0.2393 -2.4828
7 7 0.9428 0.8297 -2.6034
8 14 2.3213 -1.1203 -4.0080
9 1 1.8258 -2.5202 -4.0078
10 1 1.8260 -0.4205 -5.2204
11 1 3.8063 -1.1208 -4.0081
12 6 2.0323 -0.7104 1.2304
13 8 1.3338 -1.5336 1.7830
14 7 3.2556 -0.4269 1.7200
15 6 4.0751 0.6341 1.1188
16 6 5.4442 0.0614 0.7570
17 6 6.0646 -0.5918 1.9923
18 6 5.1714 -1.7350 2.4765
19 6 3.7974 -1.1771 2.8612
20 6 7.4512 -1.1419 1.6394
21 6 7.9971 -1.8876 2.8599
22 1 7.4521 -2.8230 2.9870
23 8 9.3844 -2.1684 2.6633
24 6 7.8274 -1.0367 4.0930
25 6 8.5653 -1.3476 5.2232
26 6 8.4290 -0.5955 6.3735
27 6 7.5528 0.4740 6.4003
28 6 6.8161 0.7894 5.2771
29 6 6.9514 0.0342 4.1163
30 8 6.2111 0.3772 3.0298
31 1 -0.3634 0.4376 -0.9299
32 1 -0.3634 -1.0240 0.0862
33 1 -0.3634 0.5867 0.8438
34 1 0.7088 1.1615 -3.4844
35 1 3.5870 1.0067 0.2182
36 1 4.2000 1.4482 1.8327
37 1 6.0934 0.8629 0.4046
38 1 5.3273 -0.6846 -0.0290
39 1 5.6273 -2.2100 3.3451
40 1 5.0556 -2.4690 1.6789
41 1 3.8999 -0.5131 3.7196
42 1 3.1260 -1.9989 3.1104
43 1 7.3708 -1.8274 0.7957
44 1 8.1186 -0.3191 1.3826
45 1 9.7974 -2.6435 3.3973
46 1 9.2509 -2.1819 5.2048
47 1 9.0072 -0.8422 7.2517
48 1 7.4460 1.0627 7.2994
49 1 6.1324 1.6251 5.2989
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000886124652.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:34:18
Heat of formation + Delta-G solvation = -116.981038 kcal
Electronic energy + Delta-G solvation = -31948.076382 eV
Core-core repulsion = 27839.175651 eV
Total energy + Delta-G solvation = -4108.900731 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.177 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-42.46949 -40.82491 -39.14260 -38.01643 -37.11093 -35.86873 -34.33944 -32.78884
-32.50519 -31.73127 -31.14138 -29.75558 -27.29235 -26.04541 -25.29713 -24.46088
-23.59388 -23.28187 -22.47221 -20.44754 -19.94975 -19.03750 -18.47286 -18.19258
-17.67709 -17.17717 -16.93445 -16.88690 -16.30674 -16.09288 -15.95299 -15.57347
-15.25778 -15.08561 -14.79507 -14.77304 -14.58000 -14.22885 -14.15742 -13.90832
-13.64491 -13.26808 -13.17275 -13.08531 -12.89856 -12.82300 -12.70104 -12.60526
-12.46155 -12.41354 -12.23591 -12.12890 -12.04085 -11.98063 -11.55696 -11.35826
-11.07977 -10.99693 -10.59171 -10.26582 -9.81170 -9.55725 -9.12149 -8.14182
-6.29623 0.31284 0.46878 1.44259 1.46917 1.53432 1.87378 2.14369
2.23499 2.46305 2.72734 3.12166 3.14995 3.41790 3.51985 3.57326
3.72878 3.85708 3.98965 4.05338 4.09505 4.16172 4.23239 4.28356
4.35742 4.44234 4.52970 4.58814 4.61153 4.65944 4.71366 4.73335
4.81237 4.87437 4.90197 4.96621 4.98281 5.00828 5.03691 5.16284
5.21662 5.35472 5.46564 5.46941 5.58100 5.63073 5.76924 5.87873
5.88090 6.16895 6.49516 6.54940 6.72756 6.73169 7.35287 7.44890
8.90960
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.016653 B = 0.003249 C = 0.002940
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1681.011709 B = 8615.094016 C = 9521.357953
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.030 3.970
3 H 0.044 0.956
4 C -0.520 4.520
5 H 0.049 0.951
6 C 0.028 3.972
7 N -0.907 5.907
8 Si 0.956 3.044
9 H -0.280 1.280
10 H -0.281 1.281
11 H -0.262 1.262
12 C 0.527 3.473
13 O -0.600 6.600
14 N -0.610 5.610
15 C 0.113 3.887
16 C -0.113 4.113
17 C 0.134 3.866
18 C -0.147 4.147
19 C 0.118 3.882
20 C -0.138 4.138
21 C 0.156 3.844
22 H 0.079 0.921
23 O -0.566 6.566
24 C -0.210 4.210
25 C -0.084 4.084
26 C -0.156 4.156
27 C -0.084 4.084
28 C -0.170 4.170
29 C 0.126 3.874
30 O -0.313 6.313
31 H 0.074 0.926
32 H 0.021 0.979
33 H 0.020 0.980
34 H 0.267 0.733
35 H 0.091 0.909
36 H 0.075 0.925
37 H 0.101 0.899
38 H 0.088 0.912
39 H 0.092 0.908
40 H 0.081 0.919
41 H 0.068 0.932
42 H 0.072 0.928
43 H 0.097 0.903
44 H 0.080 0.920
45 H 0.394 0.606
46 H 0.150 0.850
47 H 0.151 0.849
48 H 0.151 0.849
49 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.552 -1.958 15.238 24.865
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.009 3.991
3 H 0.062 0.938
4 C -0.558 4.558
5 H 0.067 0.933
6 C -0.172 4.172
7 N -0.546 5.546
8 Si 0.781 3.219
9 H -0.206 1.206
10 H -0.207 1.207
11 H -0.187 1.187
12 C 0.318 3.682
13 O -0.482 6.482
14 N -0.342 5.342
15 C -0.009 4.009
16 C -0.151 4.151
17 C 0.097 3.903
18 C -0.185 4.185
19 C -0.005 4.005
20 C -0.175 4.175
21 C 0.097 3.903
22 H 0.097 0.903
23 O -0.375 6.375
24 C -0.211 4.211
25 C -0.101 4.101
26 C -0.174 4.174
27 C -0.102 4.102
28 C -0.188 4.188
29 C 0.080 3.920
30 O -0.228 6.228
31 H 0.093 0.907
32 H 0.040 0.960
33 H 0.039 0.961
34 H 0.076 0.924
35 H 0.109 0.891
36 H 0.093 0.907
37 H 0.119 0.881
38 H 0.106 0.894
39 H 0.110 0.890
40 H 0.100 0.900
41 H 0.086 0.914
42 H 0.090 0.910
43 H 0.115 0.885
44 H 0.099 0.901
45 H 0.244 0.756
46 H 0.167 0.833
47 H 0.169 0.831
48 H 0.168 0.832
49 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 18.904 -1.773 14.787 24.066
hybrid contribution -0.078 -0.690 -0.415 0.809
sum 18.826 -2.463 14.372 23.813
Atomic orbital electron populations
1.21515 0.97064 0.98655 1.00476 1.18841 0.94108 0.96285 0.89857
0.93783 1.20803 1.32323 1.12591 0.90116 0.93308 1.25579 0.94812
0.95456 1.01399 1.69960 1.36452 1.23543 1.24595 0.85648 0.79345
0.78350 0.78590 1.20599 1.20654 1.18656 1.21657 0.80410 0.81433
0.84658 1.90491 1.57744 1.37689 1.62298 1.48123 1.16441 1.36961
1.32684 1.21643 0.90808 0.89180 0.99293 1.21810 0.95903 1.02379
0.94962 1.21624 0.94028 0.87855 0.86842 1.22477 0.95008 0.97906
1.03082 1.21389 0.94365 0.96228 0.88495 1.22133 0.95044 1.01751
0.98592 1.20463 0.83182 0.95958 0.90703 0.90305 1.86532 1.22565
1.80294 1.48124 1.20666 1.01651 1.00095 0.98708 1.21124 0.97733
0.99822 0.91464 1.21359 1.00528 0.96404 0.99100 1.21299 0.94353
0.96975 0.97575 1.20863 1.03984 1.02620 0.91364 1.18979 0.91378
0.94450 0.87153 1.86039 1.67521 1.41660 1.27533 0.90717 0.95954
0.96056 0.92414 0.89101 0.90672 0.88098 0.89371 0.88989 0.90003
0.91350 0.90987 0.88458 0.90149 0.75551 0.83268 0.83141 0.83154
0.85299
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -6.19 8.65 71.98 0.62 -5.57 16
2 C 0.03 1.52 1.81 -12.29 -0.02 1.50 16
3 H 0.04 2.25 6.31 -2.38 -0.02 2.23 16
4 C -0.52 -27.60 8.35 25.60 0.21 -27.39 16
5 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16
6 C 0.03 1.47 5.29 84.66 0.45 1.92 16
7 N -0.91 -49.38 11.29 21.45 0.24 -49.14 16
8 Si 0.96 41.56 29.54 68.60 2.03 43.58 16
9 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16
10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16
11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16
12 C 0.53 25.05 6.74 87.66 0.59 25.64 16
13 O -0.60 -31.84 15.42 -3.04 -0.05 -31.89 16
14 N -0.61 -23.28 2.98 -819.71 -2.44 -25.72 16
15 C 0.11 3.75 6.01 86.21 0.52 4.27 16
16 C -0.11 -3.09 5.10 30.47 0.16 -2.93 16
17 C 0.13 3.32 0.67 -10.75 -0.01 3.32 16
18 C -0.15 -3.80 4.40 30.65 0.13 -3.67 16
19 C 0.12 3.83 6.20 86.37 0.54 4.36 16
20 C -0.14 -2.99 4.73 30.72 0.15 -2.85 16
21 C 0.16 2.94 2.98 29.90 0.09 3.03 16
22 H 0.08 1.34 6.96 -2.38 -0.02 1.32 16
23 O -0.57 -9.89 13.18 -148.98 -1.96 -11.86 16
24 C -0.21 -4.15 5.00 -19.74 -0.10 -4.25 16
25 C -0.08 -1.23 9.26 22.30 0.21 -1.02 16
26 C -0.16 -2.12 10.04 22.25 0.22 -1.90 16
27 C -0.08 -1.32 10.04 22.22 0.22 -1.10 16
28 C -0.17 -3.54 9.94 22.42 0.22 -3.32 16
29 C 0.13 2.94 6.03 22.52 0.14 3.08 16
30 O -0.31 -8.18 8.54 -92.18 -0.79 -8.96 16
31 H 0.07 4.08 5.96 -2.38 -0.01 4.07 16
32 H 0.02 1.17 7.69 -2.39 -0.02 1.15 16
33 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16
34 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16
35 H 0.09 3.45 5.35 -2.39 -0.01 3.44 16
36 H 0.08 2.30 7.85 -2.39 -0.02 2.29 16
37 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16
38 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16
39 H 0.09 2.06 5.81 -2.39 -0.01 2.05 16
40 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
41 H 0.07 2.11 7.85 -2.38 -0.02 2.09 16
42 H 0.07 2.59 7.03 -2.39 -0.02 2.58 16
43 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16
44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
45 H 0.39 3.37 7.48 -74.06 -0.55 2.82 16
46 H 0.15 1.19 6.75 -2.91 -0.02 1.17 16
47 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16
48 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16
49 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16
Total: -1.00 -67.60 377.62 1.79 -65.81
By element:
Atomic # 1 Polarization: 24.63 SS G_CDS: 0.42 Total: 25.05 kcal
Atomic # 6 Polarization: -11.22 SS G_CDS: 4.34 Total: -6.88 kcal
Atomic # 7 Polarization: -72.65 SS G_CDS: -2.20 Total: -74.85 kcal
Atomic # 8 Polarization: -49.91 SS G_CDS: -2.80 Total: -52.71 kcal
Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal
Total: -67.60 1.79 -65.81 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000886124652.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.173 kcal
(2) G-P(sol) polarization free energy of solvation -67.598 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.771 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.790 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds