Wall clock time and date at job start Wed Apr 1 2020 03:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47361 * 2 1 4 4 C 1.50701 * 109.47653 * 120.00310 * 2 1 3 5 5 H 1.07999 * 119.99746 * 119.99954 * 4 2 1 6 6 C 1.37873 * 120.00051 * 300.00158 * 4 2 1 7 7 N 1.31525 * 119.99871 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48488 * 109.47269 * 89.99958 * 8 6 4 10 10 H 1.48507 * 109.47031 * 209.99817 * 8 6 4 11 11 H 1.48494 * 109.46853 * 329.99533 * 8 6 4 12 12 C 1.50700 * 109.46949 * 240.00721 * 2 1 3 13 13 O 1.21278 * 119.99961 * 335.45087 * 12 2 1 14 14 N 1.34772 * 120.00263 * 155.45532 * 12 2 1 15 15 C 1.46927 * 120.61449 * 175.39111 * 14 12 2 16 16 C 1.53222 * 108.75111 * 233.69689 * 15 14 12 17 17 C 1.52937 * 109.29936 * 305.45663 * 16 15 14 18 18 C 1.52911 * 109.74429 * 61.23471 * 17 16 15 19 19 C 1.46931 * 120.61215 * 355.41705 * 14 12 2 20 20 C 1.53281 * 109.49707 * 181.48310 * 17 16 15 21 21 C 1.53090 * 108.31204 * 55.19492 * 20 17 16 22 22 H 1.09000 * 109.42898 * 287.87730 * 21 20 17 23 23 O 1.42898 * 109.42979 * 167.97591 * 21 20 17 24 24 C 1.50767 * 109.70683 * 47.95102 * 21 20 17 25 25 C 1.38518 * 118.72797 * 162.27202 * 24 21 20 26 26 C 1.38098 * 120.31154 * 179.76705 * 25 24 21 27 27 C 1.38296 * 119.99459 * 359.97438 * 26 25 24 28 28 C 1.37964 * 119.94721 * 0.11409 * 27 26 25 29 29 C 1.38362 * 121.45581 * 342.24725 * 24 21 20 30 30 O 1.35860 * 121.78635 * 0.59576 * 29 24 21 31 31 H 1.08999 * 109.46824 * 185.17566 * 1 2 3 32 32 H 1.09001 * 109.46621 * 305.16631 * 1 2 3 33 33 H 1.08992 * 109.47843 * 65.16826 * 1 2 3 34 34 H 0.96994 * 119.99751 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.59208 * 113.92277 * 15 14 12 36 36 H 1.08999 * 109.71174 * 353.54828 * 15 14 12 37 37 H 1.08998 * 109.49789 * 185.50653 * 16 15 14 38 38 H 1.09000 * 109.52834 * 65.42184 * 16 15 14 39 39 H 1.09000 * 109.49553 * 58.76284 * 18 17 16 40 40 H 1.08997 * 109.50010 * 178.85858 * 18 17 16 41 41 H 1.09000 * 109.58114 * 246.13114 * 19 14 12 42 42 H 1.08992 * 109.58801 * 6.55850 * 19 14 12 43 43 H 1.09001 * 109.69390 * 174.89478 * 20 17 16 44 44 H 1.08993 * 109.69983 * 295.48748 * 20 17 16 45 45 H 0.96699 * 114.00290 * 179.97438 * 23 21 20 46 46 H 1.07994 * 119.84784 * 359.74457 * 25 24 21 47 47 H 1.07995 * 120.00413 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.02308 * 180.13961 * 27 26 25 49 49 H 1.08001 * 119.88781 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3228 -1.1197 4.0078 9 1 3.6307 -0.5442 4.4117 10 1 1.3448 -0.9492 5.1122 11 1 2.4883 -2.5654 3.7120 12 6 2.0323 -0.7103 -1.2306 13 8 1.3336 -1.5332 -1.7834 14 7 3.2578 -0.4311 -1.7167 15 6 3.8013 -1.1858 -2.8542 16 6 5.1728 -1.7461 -2.4633 17 6 6.0668 -0.6031 -1.9802 18 6 5.4444 0.0539 -0.7477 19 6 4.0754 0.6333 -1.1187 20 6 7.4522 -1.1532 -1.6229 21 6 8.0020 -1.8999 -2.8410 22 1 7.4579 -2.8358 -2.9686 23 8 9.3889 -2.1798 -2.6408 24 6 7.8358 -1.0507 -4.0756 25 6 8.5824 -1.3586 -5.2010 26 6 8.4524 -0.6055 -6.3512 27 6 7.5732 0.4615 -6.3833 28 6 6.8283 0.7739 -5.2648 29 6 6.9589 0.0192 -4.1034 30 8 6.2157 0.3636 -3.0195 31 1 -0.3633 -1.0235 0.0927 32 1 -0.3632 0.5919 0.8401 33 1 -0.3634 0.4315 -0.9325 34 1 0.7096 1.1616 3.4845 35 1 3.9084 -0.5245 -3.7140 36 1 3.1294 -2.0064 -3.1056 37 1 5.6303 -2.2250 -3.3290 38 1 5.0533 -2.4773 -1.6639 39 1 5.3232 -0.6905 0.0392 40 1 6.0945 0.8545 -0.3948 41 1 4.2038 1.4427 -1.8374 42 1 3.5838 1.0119 -0.2227 43 1 8.1188 -0.3302 -1.3649 44 1 7.3692 -1.8378 -0.7790 45 1 9.8046 -2.6531 -3.3745 46 1 9.2697 -2.1913 -5.1787 47 1 9.0373 -0.8497 -7.2256 48 1 7.4695 1.0494 -7.2833 49 1 6.1416 1.6071 -5.2911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886124653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:23 Heat of formation + Delta-G solvation = -98.233646 kcal Electronic energy + Delta-G solvation = -31947.825207 eV Core-core repulsion = 27839.737424 eV Total energy + Delta-G solvation = -4108.087783 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.51891 -39.32642 -38.04943 -37.25106 -35.78508 -33.87544 -33.23333 -31.54525 -31.20843 -30.46857 -30.01091 -28.68345 -25.25719 -24.86647 -23.93426 -23.52907 -22.53347 -22.11400 -21.14979 -19.48888 -18.50547 -18.13823 -16.94550 -16.72117 -16.30966 -16.21471 -15.86783 -15.30140 -15.21416 -14.81750 -14.56588 -14.46385 -14.31594 -13.96260 -13.79474 -13.39087 -13.25635 -13.08924 -12.89932 -12.40746 -12.31834 -12.11867 -11.95181 -11.75345 -11.66092 -11.51598 -11.48460 -11.12047 -11.06905 -10.98264 -10.84896 -10.57704 -10.43771 -10.32527 -10.27088 -10.20961 -9.95693 -9.08830 -9.04342 -8.64000 -8.35998 -8.31542 -7.99688 -6.13474 -4.21287 1.03668 1.21914 3.07063 3.23072 3.31130 3.34187 3.46863 3.67956 3.75330 3.93063 4.31724 4.36567 4.37709 4.47259 4.64815 4.80277 4.84603 4.90461 4.94580 5.18325 5.19528 5.22457 5.27465 5.33505 5.44410 5.57194 5.61474 5.69377 5.71734 5.80316 5.80857 5.87573 5.98829 6.07866 6.14364 6.18385 6.27205 6.27642 6.32830 6.41365 6.59835 6.84041 7.00251 7.07429 7.25036 7.26215 7.37485 7.55608 7.74551 7.93121 8.14563 8.28192 8.78702 9.21046 9.44359 10.92820 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.003253 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.578993 B = 8606.081094 C = 9514.996455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.530 3.470 13 O -0.566 6.566 14 N -0.618 5.618 15 C 0.118 3.882 16 C -0.156 4.156 17 C 0.128 3.872 18 C -0.117 4.117 19 C 0.114 3.886 20 C -0.140 4.140 21 C 0.151 3.849 22 H 0.071 0.929 23 O -0.555 6.555 24 C -0.199 4.199 25 C -0.081 4.081 26 C -0.158 4.158 27 C -0.083 4.083 28 C -0.152 4.152 29 C 0.155 3.845 30 O -0.298 6.298 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.009 0.991 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.113 0.887 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.376 0.624 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.128 0.872 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.725 -1.241 -14.167 21.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 H 0.065 0.935 4 C -0.547 4.547 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.322 3.678 13 O -0.445 6.445 14 N -0.352 5.352 15 C -0.005 4.005 16 C -0.195 4.195 17 C 0.090 3.910 18 C -0.155 4.155 19 C -0.009 4.009 20 C -0.178 4.178 21 C 0.093 3.907 22 H 0.088 0.912 23 O -0.361 6.361 24 C -0.201 4.201 25 C -0.099 4.099 26 C -0.176 4.176 27 C -0.101 4.101 28 C -0.170 4.170 29 C 0.109 3.891 30 O -0.212 6.212 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.224 0.776 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.146 0.854 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 16.016 -1.077 -13.691 21.098 hybrid contribution 0.747 -0.961 0.227 1.239 sum 16.764 -2.038 -13.463 21.597 Atomic orbital electron populations 1.21582 0.96199 1.00880 0.99253 1.18932 0.94637 0.96305 0.89140 0.93467 1.20711 1.32116 1.12665 0.89183 0.92486 1.24899 0.94758 0.94899 0.98907 1.69896 1.35919 1.22588 1.23777 0.86519 0.78609 0.80137 0.82372 1.20473 1.21062 1.19859 1.21992 0.79164 0.81750 0.84891 1.90519 1.56467 1.36192 1.61291 1.48164 1.17429 1.36690 1.32957 1.21259 0.93237 0.96761 0.89289 1.22560 0.96722 0.97725 1.02455 1.21818 0.93477 0.88373 0.87327 1.21960 0.97246 1.01921 0.94341 1.21677 0.90021 0.89233 0.99995 1.22196 0.96154 1.01745 0.97683 1.20557 0.82755 0.95912 0.91493 0.91184 1.86568 1.22846 1.80002 1.46730 1.20517 1.01345 1.00336 0.97859 1.20718 0.97953 0.99094 0.92161 1.20946 1.01114 0.97270 0.98289 1.20956 0.94945 0.96652 0.97514 1.20670 1.03102 1.02385 0.90879 1.18691 0.90242 0.92998 0.87194 1.86077 1.66590 1.41468 1.27041 0.94340 0.89793 0.97162 0.92665 0.92261 0.89358 0.90863 0.89594 0.88552 0.89885 0.91937 0.86897 0.89487 0.88912 0.77645 0.86271 0.85949 0.85439 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.33 37.16 0.31 -2.74 16 2 C 0.03 0.75 1.81 -92.92 -0.17 0.59 16 3 H 0.05 1.16 6.30 -51.93 -0.33 0.83 16 4 C -0.51 -13.24 8.36 -34.44 -0.29 -13.53 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.80 11.38 55.43 0.63 -23.17 16 8 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.53 12.25 6.74 -10.99 -0.07 12.17 16 13 O -0.57 -14.58 15.63 5.56 0.09 -14.49 16 14 N -0.62 -11.60 2.97 -172.74 -0.51 -12.11 16 15 C 0.12 1.91 6.19 -3.69 -0.02 1.89 16 16 C -0.16 -2.10 4.41 -26.65 -0.12 -2.21 16 17 C 0.13 1.64 0.67 -90.55 -0.06 1.58 16 18 C -0.12 -1.62 5.12 -26.66 -0.14 -1.76 16 19 C 0.11 1.87 6.04 -3.69 -0.02 1.85 16 20 C -0.14 -1.63 4.73 -26.54 -0.13 -1.76 16 21 C 0.15 1.61 2.98 -27.80 -0.08 1.53 16 22 H 0.07 0.69 6.97 -51.93 -0.36 0.33 16 23 O -0.56 -5.64 13.18 -35.23 -0.46 -6.11 16 24 C -0.20 -2.20 5.01 -104.44 -0.52 -2.73 16 25 C -0.08 -0.74 9.26 -39.53 -0.37 -1.10 16 26 C -0.16 -1.36 10.04 -39.61 -0.40 -1.76 16 27 C -0.08 -0.75 10.04 -39.66 -0.40 -1.15 16 28 C -0.15 -1.68 9.94 -39.35 -0.39 -2.07 16 29 C 0.15 1.92 6.03 -39.20 -0.24 1.68 16 30 O -0.30 -4.02 8.51 -19.30 -0.16 -4.18 16 31 H 0.04 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.08 2.20 6.23 -51.93 -0.32 1.88 16 33 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.44 16 35 H 0.06 0.92 7.84 -51.93 -0.41 0.52 16 36 H 0.09 1.56 7.04 -51.93 -0.37 1.20 16 37 H 0.07 0.88 5.82 -51.93 -0.30 0.58 16 38 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 42 H 0.11 2.08 5.35 -51.93 -0.28 1.80 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.38 2.27 7.46 45.56 0.34 2.61 16 46 H 0.12 0.74 6.73 -52.49 -0.35 0.39 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -31.21 378.22 -9.49 -40.70 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.55 Total: 6.18 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -3.20 Total: -7.84 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.12 Total: -35.28 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.54 Total: -24.78 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.21 -9.49 -40.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886124653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.534 kcal (2) G-P(sol) polarization free energy of solvation -31.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds