Wall clock time and date at job start Wed Apr 1 2020 03:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47361 * 2 1 4 4 C 1.50701 * 109.47653 * 120.00310 * 2 1 3 5 5 H 1.07999 * 119.99746 * 119.99954 * 4 2 1 6 6 C 1.37873 * 120.00051 * 300.00158 * 4 2 1 7 7 N 1.31525 * 119.99871 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00145 * 180.02562 * 6 4 2 9 9 H 1.48488 * 109.47269 * 89.99958 * 8 6 4 10 10 H 1.48507 * 109.47031 * 209.99817 * 8 6 4 11 11 H 1.48494 * 109.46853 * 329.99533 * 8 6 4 12 12 C 1.50700 * 109.46949 * 240.00721 * 2 1 3 13 13 O 1.21278 * 119.99961 * 335.45087 * 12 2 1 14 14 N 1.34772 * 120.00263 * 155.45532 * 12 2 1 15 15 C 1.46927 * 120.61449 * 175.39111 * 14 12 2 16 16 C 1.53222 * 108.75111 * 233.69689 * 15 14 12 17 17 C 1.52937 * 109.29936 * 305.45663 * 16 15 14 18 18 C 1.52911 * 109.74429 * 61.23471 * 17 16 15 19 19 C 1.46931 * 120.61215 * 355.41705 * 14 12 2 20 20 C 1.53281 * 109.49707 * 181.48310 * 17 16 15 21 21 C 1.53090 * 108.31204 * 55.19492 * 20 17 16 22 22 H 1.09000 * 109.42898 * 287.87730 * 21 20 17 23 23 O 1.42898 * 109.42979 * 167.97591 * 21 20 17 24 24 C 1.50767 * 109.70683 * 47.95102 * 21 20 17 25 25 C 1.38518 * 118.72797 * 162.27202 * 24 21 20 26 26 C 1.38098 * 120.31154 * 179.76705 * 25 24 21 27 27 C 1.38296 * 119.99459 * 359.97438 * 26 25 24 28 28 C 1.37964 * 119.94721 * 0.11409 * 27 26 25 29 29 C 1.38362 * 121.45581 * 342.24725 * 24 21 20 30 30 O 1.35860 * 121.78635 * 0.59576 * 29 24 21 31 31 H 1.08999 * 109.46824 * 185.17566 * 1 2 3 32 32 H 1.09001 * 109.46621 * 305.16631 * 1 2 3 33 33 H 1.08992 * 109.47843 * 65.16826 * 1 2 3 34 34 H 0.96994 * 119.99751 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.59208 * 113.92277 * 15 14 12 36 36 H 1.08999 * 109.71174 * 353.54828 * 15 14 12 37 37 H 1.08998 * 109.49789 * 185.50653 * 16 15 14 38 38 H 1.09000 * 109.52834 * 65.42184 * 16 15 14 39 39 H 1.09000 * 109.49553 * 58.76284 * 18 17 16 40 40 H 1.08997 * 109.50010 * 178.85858 * 18 17 16 41 41 H 1.09000 * 109.58114 * 246.13114 * 19 14 12 42 42 H 1.08992 * 109.58801 * 6.55850 * 19 14 12 43 43 H 1.09001 * 109.69390 * 174.89478 * 20 17 16 44 44 H 1.08993 * 109.69983 * 295.48748 * 20 17 16 45 45 H 0.96699 * 114.00290 * 179.97438 * 23 21 20 46 46 H 1.07994 * 119.84784 * 359.74457 * 25 24 21 47 47 H 1.07995 * 120.00413 * 179.97438 * 26 25 24 48 48 H 1.08000 * 120.02308 * 180.13961 * 27 26 25 49 49 H 1.08001 * 119.88781 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3228 -1.1197 4.0078 9 1 3.6307 -0.5442 4.4117 10 1 1.3448 -0.9492 5.1122 11 1 2.4883 -2.5654 3.7120 12 6 2.0323 -0.7103 -1.2306 13 8 1.3336 -1.5332 -1.7834 14 7 3.2578 -0.4311 -1.7167 15 6 3.8013 -1.1858 -2.8542 16 6 5.1728 -1.7461 -2.4633 17 6 6.0668 -0.6031 -1.9802 18 6 5.4444 0.0539 -0.7477 19 6 4.0754 0.6333 -1.1187 20 6 7.4522 -1.1532 -1.6229 21 6 8.0020 -1.8999 -2.8410 22 1 7.4579 -2.8358 -2.9686 23 8 9.3889 -2.1798 -2.6408 24 6 7.8358 -1.0507 -4.0756 25 6 8.5824 -1.3586 -5.2010 26 6 8.4524 -0.6055 -6.3512 27 6 7.5732 0.4615 -6.3833 28 6 6.8283 0.7739 -5.2648 29 6 6.9589 0.0192 -4.1034 30 8 6.2157 0.3636 -3.0195 31 1 -0.3633 -1.0235 0.0927 32 1 -0.3632 0.5919 0.8401 33 1 -0.3634 0.4315 -0.9325 34 1 0.7096 1.1616 3.4845 35 1 3.9084 -0.5245 -3.7140 36 1 3.1294 -2.0064 -3.1056 37 1 5.6303 -2.2250 -3.3290 38 1 5.0533 -2.4773 -1.6639 39 1 5.3232 -0.6905 0.0392 40 1 6.0945 0.8545 -0.3948 41 1 4.2038 1.4427 -1.8374 42 1 3.5838 1.0119 -0.2227 43 1 8.1188 -0.3302 -1.3649 44 1 7.3692 -1.8378 -0.7790 45 1 9.8046 -2.6531 -3.3745 46 1 9.2697 -2.1913 -5.1787 47 1 9.0373 -0.8497 -7.2256 48 1 7.4695 1.0494 -7.2833 49 1 6.1416 1.6071 -5.2911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886124653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:22 Heat of formation + Delta-G solvation = -117.298508 kcal Electronic energy + Delta-G solvation = -31948.651921 eV Core-core repulsion = 27839.737424 eV Total energy + Delta-G solvation = -4108.914498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.46457 -40.82094 -39.13996 -38.01722 -37.10036 -35.85595 -34.33816 -32.78257 -32.49619 -31.73047 -31.14287 -29.74556 -27.29030 -26.04432 -25.29901 -24.46176 -23.59301 -23.28213 -22.47701 -20.44639 -19.95190 -19.03986 -18.47705 -18.18704 -17.67440 -17.17434 -16.93022 -16.88693 -16.30344 -16.08587 -15.95135 -15.57145 -15.25731 -15.08795 -14.79385 -14.76272 -14.57752 -14.21876 -14.15170 -13.89312 -13.65673 -13.27459 -13.17136 -13.07834 -12.88507 -12.82213 -12.70505 -12.61763 -12.47648 -12.40510 -12.25964 -12.14216 -12.03379 -11.98018 -11.55823 -11.35793 -11.06884 -10.99635 -10.60069 -10.26130 -9.81126 -9.55252 -9.12034 -8.14832 -6.29184 0.31331 0.47057 1.43211 1.45994 1.54749 1.87407 2.14709 2.23793 2.46199 2.72717 3.12072 3.15118 3.42024 3.52105 3.57489 3.73035 3.86024 3.98990 4.04968 4.09407 4.16167 4.23304 4.28168 4.36023 4.44184 4.53057 4.58928 4.61249 4.66044 4.71441 4.73721 4.81597 4.87588 4.90282 4.96271 4.98025 5.00616 5.03759 5.15494 5.21765 5.35575 5.46616 5.47579 5.58151 5.63181 5.76974 5.86657 5.88160 6.15282 6.49695 6.55172 6.72711 6.73593 7.35588 7.45087 8.91262 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.003253 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.578993 B = 8606.081094 C = 9514.996455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.029 3.971 3 H 0.045 0.955 4 C -0.520 4.520 5 H 0.048 0.952 6 C 0.028 3.972 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.284 1.284 11 H -0.276 1.276 12 C 0.526 3.474 13 O -0.601 6.601 14 N -0.610 5.610 15 C 0.118 3.882 16 C -0.146 4.146 17 C 0.134 3.866 18 C -0.113 4.113 19 C 0.113 3.887 20 C -0.138 4.138 21 C 0.156 3.844 22 H 0.079 0.921 23 O -0.566 6.566 24 C -0.210 4.210 25 C -0.084 4.084 26 C -0.156 4.156 27 C -0.084 4.084 28 C -0.170 4.170 29 C 0.126 3.874 30 O -0.313 6.313 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.020 0.980 34 H 0.266 0.734 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.394 0.606 46 H 0.150 0.850 47 H 0.151 0.849 48 H 0.151 0.849 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.559 -1.919 -15.223 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.009 3.991 3 H 0.063 0.937 4 C -0.558 4.558 5 H 0.067 0.933 6 C -0.172 4.172 7 N -0.546 5.546 8 Si 0.781 3.219 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.201 1.201 12 C 0.318 3.682 13 O -0.482 6.482 14 N -0.342 5.342 15 C -0.005 4.005 16 C -0.185 4.185 17 C 0.097 3.903 18 C -0.151 4.151 19 C -0.009 4.009 20 C -0.175 4.175 21 C 0.097 3.903 22 H 0.097 0.903 23 O -0.375 6.375 24 C -0.211 4.211 25 C -0.101 4.101 26 C -0.174 4.174 27 C -0.102 4.102 28 C -0.188 4.188 29 C 0.081 3.919 30 O -0.227 6.227 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.244 0.756 46 H 0.167 0.833 47 H 0.169 0.831 48 H 0.168 0.832 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.908 -1.740 -14.773 24.058 hybrid contribution -0.074 -0.695 0.426 0.818 sum 18.834 -2.435 -14.347 23.801 Atomic orbital electron populations 1.21454 0.96970 0.99426 0.99174 1.18857 0.94109 0.96311 0.89873 0.93722 1.20812 1.32324 1.12540 0.90096 0.93344 1.25579 0.94799 0.95469 1.01399 1.69987 1.36541 1.23534 1.24509 0.85582 0.78580 0.78804 0.78894 1.19002 1.20927 1.20119 1.21668 0.80426 0.81457 0.84630 1.90491 1.57816 1.37685 1.62247 1.48123 1.16287 1.36753 1.33061 1.21379 0.94354 0.96164 0.88563 1.22474 0.95024 0.97892 1.03065 1.21626 0.94012 0.87900 0.86811 1.21897 0.95895 1.02296 0.94963 1.21745 0.90807 0.89077 0.99274 1.22125 0.95041 1.01747 0.98599 1.20457 0.83184 0.95971 0.90689 0.90326 1.86530 1.22536 1.80420 1.48036 1.20665 1.01577 1.00158 0.98744 1.21122 0.97694 0.99814 0.91512 1.21357 1.00543 0.96413 0.99087 1.21298 0.94307 0.96985 0.97610 1.20857 1.03933 1.02638 0.91405 1.18968 0.91341 0.94427 0.87207 1.86035 1.67392 1.41708 1.27607 0.96095 0.91061 0.96131 0.92454 0.91366 0.91003 0.89009 0.90017 0.89325 0.88138 0.90627 0.89097 0.90144 0.88446 0.75552 0.83271 0.83149 0.83153 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.82 8.33 71.98 0.60 -5.22 16 2 C 0.03 1.49 1.81 -12.29 -0.02 1.47 16 3 H 0.05 2.27 6.30 -2.38 -0.02 2.26 16 4 C -0.52 -27.58 8.36 25.60 0.21 -27.36 16 5 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 6 C 0.03 1.47 5.30 84.65 0.45 1.92 16 7 N -0.91 -49.37 11.38 21.45 0.24 -49.13 16 8 Si 0.96 41.65 29.54 68.60 2.03 43.68 16 9 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 C 0.53 25.02 6.74 87.66 0.59 25.61 16 13 O -0.60 -31.85 15.63 -3.02 -0.05 -31.90 16 14 N -0.61 -23.26 2.97 -818.80 -2.43 -25.69 16 15 C 0.12 3.83 6.19 86.37 0.53 4.37 16 16 C -0.15 -3.80 4.41 30.65 0.14 -3.66 16 17 C 0.13 3.32 0.67 -10.75 -0.01 3.31 16 18 C -0.11 -3.08 5.12 30.64 0.16 -2.92 16 19 C 0.11 3.75 6.04 86.37 0.52 4.27 16 20 C -0.14 -2.99 4.73 30.72 0.15 -2.84 16 21 C 0.16 2.94 2.98 29.90 0.09 3.03 16 22 H 0.08 1.34 6.97 -2.39 -0.02 1.32 16 23 O -0.57 -9.90 13.18 -148.98 -1.96 -11.86 16 24 C -0.21 -4.16 5.01 -19.75 -0.10 -4.26 16 25 C -0.08 -1.23 9.26 22.30 0.21 -1.02 16 26 C -0.16 -2.12 10.04 22.25 0.22 -1.90 16 27 C -0.08 -1.32 10.04 22.22 0.22 -1.10 16 28 C -0.17 -3.54 9.94 22.42 0.22 -3.31 16 29 C 0.13 2.94 6.03 22.51 0.14 3.08 16 30 O -0.31 -8.16 8.51 -91.98 -0.78 -8.95 16 31 H 0.02 1.10 8.04 -2.39 -0.02 1.08 16 32 H 0.07 3.85 6.23 -2.39 -0.01 3.83 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 35 H 0.07 2.11 7.84 -2.39 -0.02 2.09 16 36 H 0.07 2.59 7.04 -2.39 -0.02 2.57 16 37 H 0.09 2.06 5.82 -2.39 -0.01 2.05 16 38 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.08 2.31 7.85 -2.39 -0.02 2.29 16 42 H 0.09 3.44 5.35 -2.39 -0.01 3.43 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.39 3.38 7.46 -74.06 -0.55 2.83 16 46 H 0.15 1.19 6.73 -2.91 -0.02 1.17 16 47 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 48 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 49 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -67.69 378.22 1.79 -65.91 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.42 Total: 24.48 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 4.32 Total: -6.55 kcal Atomic # 7 Polarization: -72.63 SS G_CDS: -2.19 Total: -74.82 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -2.79 Total: -52.70 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -67.69 1.79 -65.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886124653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.393 kcal (2) G-P(sol) polarization free energy of solvation -67.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds