Wall clock time and date at job start Wed Apr 1 2020 02:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34238 * 116.99924 * 2 1 4 4 O 1.20817 * 119.99853 * 359.97438 * 3 2 1 5 5 C 1.50693 * 119.99700 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46405 * 60.02889 * 5 3 2 7 7 C 1.53045 * 109.46192 * 300.06519 * 5 3 2 8 8 C 1.53625 * 109.23960 * 178.49401 * 7 5 3 9 9 N 1.46924 * 108.54662 * 54.85469 * 8 7 5 10 10 C 1.34780 * 120.62753 * 126.36560 * 9 8 7 11 11 O 1.21278 * 119.99612 * 174.52692 * 10 9 8 12 12 C 1.50699 * 120.00098 * 354.52381 * 10 9 8 13 13 C 1.50705 * 109.47205 * 179.97438 * 12 10 9 14 14 C 1.37633 * 120.12516 * 265.00641 * 13 12 10 15 15 C 1.38618 * 120.24574 * 180.02562 * 14 13 12 16 16 C 1.38660 * 120.49998 * 359.97051 * 15 14 13 17 17 C 1.37594 * 120.25112 * 0.02562 * 16 15 14 18 18 C 1.40696 * 120.12427 * 84.97777 * 13 12 10 19 19 C 1.41396 * 120.24540 * 0.02562 * 18 13 12 20 20 H 1.07995 * 120.00211 * 344.52840 * 19 18 13 21 21 C 1.39952 * 119.99731 * 164.53255 * 19 18 13 22 22 N 1.30828 * 119.99836 * 331.34166 * 21 19 18 23 23 Si 1.86799 * 120.00005 * 151.34245 * 21 19 18 24 24 H 1.48503 * 109.47090 * 94.99443 * 23 21 19 25 25 H 1.48493 * 109.47023 * 214.99355 * 23 21 19 26 26 H 1.48503 * 109.47193 * 334.99477 * 23 21 19 27 27 C 1.46922 * 118.73971 * 306.09534 * 9 8 7 28 28 H 1.09000 * 109.58497 * 294.06720 * 27 9 8 29 29 C 1.53001 * 109.58661 * 173.78650 * 27 9 8 30 30 C 1.53040 * 109.45866 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.46982 * 60.00416 * 1 2 3 32 32 H 1.08997 * 109.46766 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47260 * 300.00438 * 1 2 3 34 34 H 1.08997 * 109.49718 * 298.56525 * 7 5 3 35 35 H 1.08999 * 109.49668 * 58.66934 * 7 5 3 36 36 H 1.09005 * 109.73904 * 295.11303 * 8 7 5 37 37 H 1.09001 * 109.65961 * 174.55318 * 8 7 5 38 38 H 1.09000 * 109.47043 * 59.99946 * 12 10 9 39 39 H 1.08996 * 109.47435 * 299.99859 * 12 10 9 40 40 H 1.07997 * 119.88404 * 359.97258 * 14 13 12 41 41 H 1.07994 * 119.75017 * 179.97438 * 15 14 13 42 42 H 1.08000 * 119.87240 * 179.73050 * 16 15 14 43 43 H 1.07994 * 120.13045 * 179.97438 * 17 16 15 44 44 H 0.96998 * 119.99517 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.46993 * 66.24981 * 29 27 9 46 46 H 1.08999 * 109.47184 * 186.25288 * 29 27 9 47 47 H 1.09000 * 109.47370 * 306.25122 * 29 27 9 48 48 H 1.09004 * 109.49655 * 61.43429 * 30 5 3 49 49 H 1.09002 * 109.49972 * 301.33443 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9562 0.7810 -0.8895 7 6 4.1128 0.5799 1.2498 8 6 5.6481 0.6301 1.2263 9 7 6.0677 2.0309 1.0832 10 6 6.9340 2.5809 1.9571 11 8 7.3494 3.7053 1.7727 12 6 7.3863 1.7987 3.1631 13 6 8.3459 2.6330 3.9720 14 6 9.7031 2.4997 3.7864 15 6 10.5880 3.2654 4.5294 16 6 10.1182 4.1734 5.4662 17 6 8.7655 4.3233 5.6685 18 6 7.8577 3.5515 4.9194 19 6 6.4654 3.6969 5.1187 20 1 5.7717 3.3028 4.3909 21 6 5.9864 4.3518 6.2590 22 7 6.6852 4.3352 7.3649 23 14 4.3493 5.2495 6.2020 24 1 3.2753 4.3525 6.6993 25 1 4.4188 6.4605 7.0585 26 1 4.0522 5.6490 4.8030 27 6 5.5296 2.8189 -0.0340 28 1 5.8947 2.4124 -0.9771 29 6 5.9766 4.2757 0.1038 30 6 4.0000 2.7426 -0.0002 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 3.7434 1.0886 2.1402 35 1 3.7842 -0.4593 1.2611 36 1 6.0226 0.0486 0.3838 37 1 6.0426 0.2237 2.1576 38 1 7.8845 0.8853 2.8379 39 1 6.5217 1.5426 3.7754 40 1 10.0802 1.7954 3.0597 41 1 11.6514 3.1541 4.3775 42 1 10.8168 4.7617 6.0426 43 1 8.4017 5.0307 6.3989 44 1 6.3530 4.7887 8.1553 45 1 7.0577 4.3373 -0.0207 46 1 5.4877 4.8796 -0.6606 47 1 5.7028 4.6480 1.0910 48 1 3.6315 3.2313 0.9018 49 1 3.5910 3.2423 -0.8783 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886366399.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:29 Heat of formation + Delta-G solvation = -113.325683 kcal Electronic energy + Delta-G solvation = -31327.124346 eV Core-core repulsion = 27218.382124 eV Total energy + Delta-G solvation = -4108.742223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.94003 -41.13885 -39.40778 -38.19603 -37.43264 -35.58538 -34.44508 -34.01491 -32.78568 -31.34296 -29.25330 -28.67262 -28.07948 -26.86836 -26.04663 -23.52775 -23.16498 -22.80638 -21.64409 -21.10375 -19.81228 -19.06142 -18.58946 -17.79703 -17.62158 -17.31688 -17.20533 -17.02386 -16.39570 -16.13946 -15.53490 -15.36625 -15.17746 -14.94261 -14.73835 -14.50275 -14.40985 -14.22296 -13.77911 -13.56058 -13.44952 -13.40682 -13.25349 -13.16952 -12.91522 -12.80350 -12.73615 -12.67114 -12.54504 -12.48801 -12.18814 -12.06478 -11.85276 -11.75590 -11.67871 -11.44740 -11.29192 -11.22345 -10.86899 -9.94204 -9.45900 -9.31683 -9.12208 -8.72519 -6.23760 0.98954 1.11786 1.15836 1.29659 1.39341 1.53095 1.69635 1.91698 2.12727 2.20409 2.69921 3.45695 3.66192 3.69857 3.74661 3.95017 4.07288 4.19642 4.24685 4.30332 4.31720 4.36276 4.44017 4.47050 4.53069 4.56877 4.63649 4.70475 4.72149 4.74818 4.78889 4.82280 4.87249 4.96912 5.01636 5.09906 5.14086 5.19266 5.28746 5.37266 5.39833 5.45349 5.58230 5.76831 5.83071 6.06915 6.19187 6.26750 6.41983 6.58806 6.68372 6.74943 6.98189 7.14565 7.51824 8.23149 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.003667 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.306722 B = 7633.591261 C = 9000.951658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.466 3.534 4 O -0.543 6.543 5 C -0.071 4.071 6 H 0.149 0.851 7 C -0.123 4.123 8 C 0.106 3.894 9 N -0.620 5.620 10 C 0.515 3.485 11 O -0.557 6.557 12 C -0.067 4.067 13 C -0.193 4.193 14 C -0.084 4.084 15 C -0.256 4.256 16 C -0.112 4.112 17 C -0.216 4.216 18 C 0.098 3.902 19 C -0.479 4.479 20 H 0.071 0.929 21 C 0.050 3.950 22 N -0.802 5.802 23 Si 0.953 3.047 24 H -0.254 1.254 25 H -0.263 1.263 26 H -0.274 1.274 27 C 0.151 3.849 28 H 0.103 0.897 29 C -0.130 4.130 30 C -0.110 4.110 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.289 0.711 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.027 0.973 48 H 0.042 0.958 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.677 -13.023 -15.020 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.311 3.689 4 O -0.433 6.433 5 C -0.090 4.090 6 H 0.166 0.834 7 C -0.161 4.161 8 C -0.016 4.016 9 N -0.356 5.356 10 C 0.305 3.695 11 O -0.435 6.435 12 C -0.107 4.107 13 C -0.195 4.195 14 C -0.102 4.102 15 C -0.275 4.275 16 C -0.130 4.130 17 C -0.235 4.235 18 C 0.096 3.904 19 C -0.507 4.507 20 H 0.089 0.911 21 C -0.168 4.168 22 N -0.426 5.426 23 Si 0.775 3.225 24 H -0.178 1.178 25 H -0.188 1.188 26 H -0.199 1.199 27 C 0.049 3.951 28 H 0.121 0.879 29 C -0.187 4.187 30 C -0.149 4.149 31 H 0.081 0.919 32 H 0.152 0.848 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.137 0.863 36 H 0.128 0.872 37 H 0.118 0.882 38 H 0.130 0.870 39 H 0.108 0.892 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.046 0.954 48 H 0.061 0.939 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.691 -12.089 -14.842 21.455 hybrid contribution -0.975 1.241 0.685 1.720 sum -10.666 -10.848 -14.157 20.781 Atomic orbital electron populations 1.23532 0.75141 1.05728 1.02201 1.86497 1.24633 1.32471 1.83550 1.24188 0.92673 0.81143 0.70899 1.90673 1.68089 1.37743 1.46781 1.21128 0.85733 0.98323 1.03779 0.83383 1.22025 0.96001 1.02856 0.95261 1.22123 0.93506 0.80636 1.05320 1.48355 1.45326 1.13622 1.28254 1.21103 0.78026 0.86719 0.83657 1.90718 1.56830 1.20765 1.75167 1.20317 0.99428 0.97849 0.93071 1.19422 0.93378 1.02794 1.03874 1.20696 0.92799 0.98673 0.98002 1.20647 0.98395 1.04588 1.03870 1.20895 0.95036 0.98776 0.98300 1.21312 0.93093 1.03962 1.05131 1.17665 0.93351 0.89068 0.90338 1.19587 0.92449 1.33747 1.04943 0.91057 1.26565 1.01925 0.94501 0.93803 1.69924 1.39625 1.32036 1.01053 0.85640 0.78710 0.79210 0.78972 1.17843 1.18768 1.19865 1.21232 0.91870 0.91939 0.90076 0.87927 1.22000 1.01676 0.95008 1.00021 1.21858 0.95074 0.94897 1.03068 0.91938 0.84777 0.92763 0.93142 0.86312 0.87244 0.88182 0.87044 0.89205 0.86561 0.87034 0.88070 0.88546 0.90005 0.92159 0.92326 0.95351 0.93893 0.89289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.14 10.44 -51.50 -0.54 -6.67 16 3 C 0.47 9.96 7.26 71.23 0.52 10.47 16 4 O -0.54 -15.71 15.73 21.99 0.35 -15.36 16 5 C -0.07 -1.21 2.59 -11.51 -0.03 -1.24 16 6 H 0.15 1.47 8.14 -2.38 -0.02 1.45 16 7 C -0.12 -2.02 5.32 30.82 0.16 -1.86 16 8 C 0.11 1.80 6.38 86.51 0.55 2.36 16 9 N -0.62 -16.76 2.97 -794.19 -2.36 -19.12 16 10 C 0.52 19.33 7.25 87.66 0.64 19.97 16 11 O -0.56 -26.05 11.58 -3.02 -0.04 -26.08 16 12 C -0.07 -2.51 3.52 29.10 0.10 -2.41 16 13 C -0.19 -9.23 4.43 -19.40 -0.09 -9.31 16 14 C -0.08 -3.76 9.66 22.22 0.21 -3.54 16 15 C -0.26 -11.81 10.05 22.46 0.23 -11.58 16 16 C -0.11 -5.61 10.02 22.22 0.22 -5.39 16 17 C -0.22 -12.09 8.81 22.73 0.20 -11.89 16 18 C 0.10 5.42 5.64 -21.29 -0.12 5.30 16 19 C -0.48 -26.14 8.32 23.46 0.20 -25.94 16 20 H 0.07 3.80 6.46 -2.91 -0.02 3.78 16 21 C 0.05 2.60 4.98 85.26 0.42 3.02 16 22 N -0.80 -42.53 11.08 21.83 0.24 -42.29 16 23 Si 0.95 40.43 29.64 68.60 2.03 42.46 16 24 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 25 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 26 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 27 C 0.15 3.75 3.48 44.98 0.16 3.90 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 C -0.13 -4.21 7.62 71.98 0.55 -3.66 16 30 C -0.11 -2.55 3.95 30.67 0.12 -2.43 16 31 H 0.06 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.12 1.28 8.08 -2.39 -0.02 1.26 16 36 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.10 1.68 5.93 -2.39 -0.01 1.67 16 38 H 0.11 3.22 7.63 -2.39 -0.02 3.20 16 39 H 0.09 3.40 6.65 -2.39 -0.02 3.38 16 40 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 41 H 0.11 4.43 8.06 -2.91 -0.02 4.40 16 42 H 0.10 4.55 8.06 -2.91 -0.02 4.52 16 43 H 0.10 5.64 5.93 -2.91 -0.02 5.63 16 44 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 45 H 0.06 2.19 6.60 -2.39 -0.02 2.18 16 46 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.03 1.14 6.90 -2.39 -0.02 1.13 16 48 H 0.04 1.31 8.13 -2.39 -0.02 1.29 16 49 H 0.09 1.90 8.07 -2.39 -0.02 1.88 16 Total: -1.00 -75.21 390.55 5.88 -69.32 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.95 Total: 30.42 kcal Atomic # 6 Polarization: -37.92 SS G_CDS: 5.24 Total: -32.68 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -2.11 Total: -61.41 kcal Atomic # 8 Polarization: -47.89 SS G_CDS: -0.23 Total: -48.12 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -75.21 5.88 -69.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886366399.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.002 kcal (2) G-P(sol) polarization free energy of solvation -75.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds