Wall clock time and date at job start Wed Apr 1 2020 04:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.20753 * 120.00080 * 2 1 4 4 C 1.50699 * 119.99537 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.47570 * 329.99877 * 4 2 1 6 6 C 1.53003 * 109.47143 * 90.00027 * 4 2 1 7 7 C 1.53000 * 109.46956 * 179.97438 * 6 4 2 8 8 C 1.52991 * 109.47533 * 299.99869 * 7 6 4 9 9 H 1.09004 * 109.47313 * 300.00285 * 8 7 6 10 10 N 1.46506 * 109.47094 * 180.02562 * 8 7 6 11 11 C 1.34772 * 119.99932 * 85.00234 * 10 8 7 12 12 O 1.21280 * 119.99939 * 359.97438 * 11 10 8 13 13 C 1.50699 * 120.00005 * 179.97438 * 11 10 8 14 14 C 1.50694 * 109.47354 * 180.02562 * 13 11 10 15 15 C 1.38325 * 119.96839 * 89.99733 * 14 13 11 16 16 C 1.38278 * 120.14215 * 179.97438 * 15 14 13 17 17 C 1.38128 * 120.06716 * 359.97438 * 16 15 14 18 18 C 1.38854 * 119.92825 * 0.02562 * 17 16 15 19 19 O 1.35756 * 120.06859 * 179.97438 * 18 17 16 20 20 C 1.34831 * 116.99675 * 354.46615 * 19 18 17 21 21 H 1.07996 * 119.99935 * 5.05045 * 20 19 18 22 22 C 1.38662 * 119.99922 * 185.05520 * 20 19 18 23 23 N 1.31556 * 119.99574 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00025 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46961 * 89.99912 * 24 22 20 26 26 H 1.48495 * 109.46975 * 210.00219 * 24 22 20 27 27 H 1.48498 * 109.47300 * 330.00048 * 24 22 20 28 28 C 1.38078 * 119.96715 * 269.72795 * 14 13 11 29 29 C 1.53003 * 109.46892 * 60.00092 * 8 7 6 30 30 C 1.52998 * 109.47203 * 299.99767 * 29 8 7 31 31 H 1.08996 * 109.47381 * 89.99936 * 1 2 3 32 32 H 1.09005 * 109.47000 * 330.00026 * 1 2 3 33 33 H 1.09003 * 109.47092 * 210.00264 * 1 2 3 34 34 H 1.09001 * 109.47072 * 299.99441 * 6 4 2 35 35 H 1.09004 * 109.46984 * 59.99718 * 6 4 2 36 36 H 1.09008 * 109.46823 * 179.97438 * 7 6 4 37 37 H 1.09004 * 109.47053 * 60.00313 * 7 6 4 38 38 H 0.97004 * 119.99872 * 264.99833 * 10 8 7 39 39 H 1.09007 * 109.47110 * 300.00202 * 13 11 10 40 40 H 1.09001 * 109.46995 * 59.99467 * 13 11 10 41 41 H 1.08004 * 119.93099 * 359.97438 * 15 14 13 42 42 H 1.07996 * 119.96687 * 180.02562 * 16 15 14 43 43 H 1.08003 * 120.03447 * 180.02562 * 17 16 15 44 44 H 0.97002 * 119.99429 * 180.02562 * 23 22 20 45 45 H 1.08006 * 120.03143 * 359.97438 * 28 14 13 46 46 H 1.09003 * 109.46763 * 179.97438 * 29 8 7 47 47 H 1.08997 * 109.47428 * 60.00505 * 29 8 7 48 48 H 1.08995 * 109.47492 * 300.00139 * 30 29 8 49 49 H 1.08997 * 109.46790 * 179.97438 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2604 -1.3052 0.0006 5 1 1.6713 -2.0645 0.5147 6 6 2.5154 -1.7475 -1.4417 7 6 3.2808 -3.0723 -1.4411 8 6 4.6177 -2.8886 -0.7202 9 1 5.2065 -2.1290 -1.2345 10 7 5.3508 -4.1570 -0.7202 11 6 6.1149 -4.4937 -1.7781 12 8 6.1952 -3.7468 -2.7303 13 6 6.8695 -5.7981 -1.7778 14 6 7.6409 -5.9325 -3.0653 15 6 8.9346 -5.4502 -3.1493 16 6 9.6460 -5.5721 -4.3288 17 6 9.0664 -6.1767 -5.4271 18 6 7.7679 -6.6619 -5.3461 19 8 7.1953 -7.2562 -6.4240 20 6 7.8967 -7.2417 -7.5754 21 1 8.9008 -6.8445 -7.5910 22 6 7.3287 -7.7366 -8.7395 23 7 6.1056 -8.2208 -8.7203 24 14 8.3001 -7.7159 -10.3348 25 1 9.0654 -8.9818 -10.4648 26 1 7.3660 -7.5822 -11.4814 27 1 9.2412 -6.5672 -10.3265 28 6 7.0576 -6.5420 -4.1585 29 6 4.3627 -2.4462 0.7221 30 6 3.5973 -1.1214 0.7216 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 0.8900 0.5139 33 1 -0.3633 -0.8900 0.5139 34 1 1.5629 -1.8781 -1.9555 35 1 3.1045 -0.9881 -1.9559 36 1 3.4621 -3.3876 -2.4687 37 1 2.6920 -3.8319 -0.9268 38 1 5.2863 -4.7544 0.0413 39 1 7.5619 -5.8172 -0.9361 40 1 6.1653 -6.6252 -1.6876 41 1 9.3902 -4.9774 -2.2917 42 1 10.6560 -5.1949 -4.3910 43 1 9.6226 -6.2720 -6.3480 44 1 5.7084 -8.5674 -9.5345 45 1 6.0491 -6.9226 -4.0909 46 1 5.3152 -2.3158 1.2359 47 1 3.7740 -3.2058 1.2365 48 1 4.1861 -0.3619 0.2073 49 1 3.4153 -0.8066 1.7491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887255127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:19:02 Heat of formation + Delta-G solvation = -124.385436 kcal Electronic energy + Delta-G solvation = -29201.970378 eV Core-core repulsion = 25092.748568 eV Total energy + Delta-G solvation = -4109.221810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.41403 -40.90561 -40.35824 -38.71344 -38.01251 -35.18780 -34.34367 -33.48924 -32.04765 -31.63938 -30.88760 -29.98239 -28.22053 -27.21931 -24.38283 -23.79121 -23.25904 -22.66467 -21.43922 -21.15996 -20.25710 -19.49272 -18.80211 -17.97236 -17.40344 -16.92132 -16.81232 -16.61042 -16.29962 -16.11135 -15.97484 -15.82775 -15.51251 -15.15719 -15.00507 -14.76791 -14.68213 -14.31506 -14.20716 -13.99036 -13.61480 -13.47291 -13.28529 -13.21060 -12.97408 -12.97081 -12.76667 -12.61417 -12.48352 -12.33578 -12.24076 -12.20742 -12.14431 -12.11042 -11.49894 -11.30646 -11.21179 -10.92178 -10.78982 -10.41633 -10.00174 -9.62786 -8.97524 -8.47586 -6.15825 0.52719 0.75937 0.98603 1.33008 1.42980 1.51041 1.72512 2.16550 2.24366 2.85059 3.10114 3.18458 3.45689 3.63175 3.67961 3.83088 3.98154 4.05266 4.10941 4.18557 4.20356 4.32300 4.35175 4.36846 4.46610 4.48160 4.48655 4.59084 4.65215 4.66643 4.69549 4.73746 4.74196 4.84739 5.02690 5.04111 5.08185 5.11761 5.12880 5.15539 5.25655 5.30744 5.31336 5.38894 5.59835 5.65458 5.73037 5.75881 6.02642 6.24116 6.57868 6.66462 6.97076 7.39010 7.78709 8.76045 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.001997 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.971672 B =14020.824220 C =15258.335843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.359 3.641 3 O -0.506 6.506 4 C -0.133 4.133 5 H 0.135 0.865 6 C -0.101 4.101 7 C -0.124 4.124 8 C 0.142 3.858 9 H 0.050 0.950 10 N -0.712 5.712 11 C 0.513 3.487 12 O -0.581 6.581 13 C -0.091 4.091 14 C -0.025 4.025 15 C -0.182 4.182 16 C -0.075 4.075 17 C -0.248 4.248 18 C 0.110 3.890 19 O -0.234 6.234 20 C -0.414 4.414 21 H 0.099 0.901 22 C -0.025 4.025 23 N -0.921 5.921 24 Si 1.020 2.980 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.256 1.256 28 C -0.192 4.192 29 C -0.110 4.110 30 C -0.105 4.105 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.036 0.964 37 H 0.094 0.906 38 H 0.420 0.580 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.117 0.883 44 H 0.273 0.727 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.102 0.898 48 H 0.045 0.955 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 9.773 25.829 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.238 3.762 3 O -0.382 6.382 4 C -0.152 4.152 5 H 0.153 0.847 6 C -0.139 4.139 7 C -0.162 4.162 8 C 0.037 3.963 9 H 0.068 0.932 10 N -0.365 5.365 11 C 0.300 3.700 12 O -0.460 6.460 13 C -0.130 4.130 14 C -0.026 4.026 15 C -0.200 4.200 16 C -0.093 4.093 17 C -0.267 4.267 18 C 0.061 3.939 19 O -0.141 6.141 20 C -0.490 4.490 21 H 0.116 0.884 22 C -0.222 4.222 23 N -0.560 5.560 24 Si 0.839 3.161 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.180 1.180 28 C -0.211 4.211 29 C -0.148 4.148 30 C -0.143 4.143 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.113 0.887 38 H 0.258 0.742 39 H 0.162 0.838 40 H 0.142 0.858 41 H 0.164 0.836 42 H 0.162 0.838 43 H 0.135 0.865 44 H 0.081 0.919 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.120 0.880 48 H 0.064 0.936 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.064 10.649 25.012 28.356 hybrid contribution 0.275 -0.220 -1.262 1.310 sum -7.789 10.429 23.751 27.084 Atomic orbital electron populations 1.22370 0.91841 1.06111 1.05688 1.25253 0.93484 0.89687 0.67786 1.90409 1.73257 1.36807 1.37771 1.21900 0.98034 0.97352 0.97911 0.84734 1.21343 1.01078 0.96558 0.94903 1.21853 0.96106 0.98067 1.00184 1.20970 0.91972 0.85446 0.97910 0.93189 1.45875 1.47836 1.22343 1.20448 1.20957 0.78959 0.88033 0.82036 1.90764 1.64893 1.54106 1.36234 1.20716 1.00239 0.95622 0.96427 1.19231 0.94300 0.95247 0.93827 1.20979 0.94850 1.05261 0.98916 1.21133 1.00101 0.96091 0.91988 1.21291 0.95871 1.08406 1.01177 1.19894 0.92933 0.92284 0.88831 1.83932 1.45217 1.67857 1.17073 1.21811 0.99315 1.43283 0.84591 0.88358 1.26613 0.97448 0.95677 1.02475 1.70189 1.15542 1.40128 1.30133 0.84578 0.77344 0.79725 0.74489 1.18435 1.19484 1.17975 1.20226 0.99983 1.08679 0.92222 1.21714 1.01813 0.97740 0.93499 1.21382 0.94761 0.97190 1.00996 0.87707 0.89978 0.86658 0.89509 0.94062 0.94478 0.88708 0.74235 0.83799 0.85835 0.83581 0.83829 0.86547 0.91850 0.87455 0.90288 0.87997 0.93599 0.89938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.36 10.25 71.24 0.73 -0.63 16 2 C 0.36 5.02 6.32 29.10 0.18 5.20 16 3 O -0.51 -11.95 16.91 -1.43 -0.02 -11.97 16 4 C -0.13 -1.41 2.46 -11.54 -0.03 -1.44 16 5 H 0.13 0.49 8.04 -2.39 -0.02 0.47 16 6 C -0.10 -1.54 5.19 30.60 0.16 -1.38 16 7 C -0.12 -2.16 5.49 30.59 0.17 -1.99 16 8 C 0.14 2.50 2.45 44.99 0.11 2.61 16 9 H 0.05 1.29 7.58 -2.39 -0.02 1.27 16 10 N -0.71 -11.81 5.08 -442.53 -2.25 -14.05 16 11 C 0.51 13.57 7.79 87.66 0.68 14.26 16 12 O -0.58 -22.85 15.70 -3.03 -0.05 -22.90 16 13 C -0.09 -2.05 5.83 29.10 0.17 -1.88 16 14 C -0.03 -0.90 4.37 -19.88 -0.09 -0.98 16 15 C -0.18 -6.10 9.70 22.30 0.22 -5.88 16 16 C -0.08 -2.82 10.04 22.25 0.22 -2.59 16 17 C -0.25 -11.71 9.17 22.39 0.21 -11.50 16 18 C 0.11 5.91 6.65 22.58 0.15 6.06 16 19 O -0.23 -14.84 9.76 -22.82 -0.22 -15.07 16 20 C -0.41 -25.32 9.49 67.92 0.64 -24.67 16 21 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 22 C -0.03 -1.48 5.49 84.84 0.47 -1.02 16 23 N -0.92 -58.38 13.67 21.62 0.30 -58.08 16 24 Si 1.02 44.62 29.55 68.60 2.03 46.65 16 25 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 28 C -0.19 -8.74 9.64 22.39 0.22 -8.53 16 29 C -0.11 -1.08 5.39 30.59 0.16 -0.91 16 30 C -0.11 -1.31 4.80 30.60 0.15 -1.16 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.11 0.10 8.04 -2.39 -0.02 0.08 16 34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 3.30 8.60 -92.71 -0.80 2.50 16 39 H 0.14 1.97 8.08 -2.38 -0.02 1.95 16 40 H 0.12 2.25 8.08 -2.39 -0.02 2.23 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.67 16 42 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 43 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 44 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 45 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 46 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.05 0.86 7.85 -2.39 -0.02 0.84 16 49 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -91.55 405.40 4.46 -87.09 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: 0.16 Total: 24.78 kcal Atomic # 6 Polarization: -40.97 SS G_CDS: 4.52 Total: -36.45 kcal Atomic # 7 Polarization: -70.18 SS G_CDS: -1.95 Total: -72.13 kcal Atomic # 8 Polarization: -49.64 SS G_CDS: -0.29 Total: -49.93 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -91.55 4.46 -87.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887255127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.299 kcal (2) G-P(sol) polarization free energy of solvation -91.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds