Wall clock time and date at job start Wed Apr 1 2020 04:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46949 * 2 1 4 4 C 1.46499 * 119.99999 * 270.00428 * 3 2 1 5 5 C 1.50708 * 109.47058 * 269.99986 * 4 3 2 6 6 H 1.07995 * 120.00085 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99939 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99813 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 119.99975 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.47128 * 89.99940 * 9 7 5 11 11 H 1.48495 * 109.47235 * 209.99715 * 9 7 5 12 12 H 1.48499 * 109.47374 * 329.99788 * 9 7 5 13 13 C 1.34775 * 119.99981 * 90.00543 * 3 2 1 14 14 O 1.21278 * 119.99666 * 179.97438 * 13 3 2 15 15 C 1.50700 * 119.99689 * 359.97438 * 13 3 2 16 16 O 1.45202 * 109.46609 * 180.02562 * 15 13 3 17 17 C 1.34713 * 116.99936 * 179.97438 * 16 15 13 18 18 O 1.21478 * 119.99623 * 0.02562 * 17 16 15 19 19 C 1.47729 * 120.00357 * 180.02562 * 17 16 15 20 20 C 1.39659 * 120.27003 * 0.02562 * 19 17 16 21 21 C 1.37613 * 119.60817 * 180.15085 * 20 19 17 22 22 C 1.39085 * 120.76590 * 359.97438 * 21 20 19 23 23 C 1.37842 * 119.91194 * 359.74727 * 22 21 20 24 24 C 1.38639 * 119.82601 * 0.39072 * 23 22 21 25 25 C 1.50660 * 122.55006 * 180.75041 * 23 22 21 26 26 C 1.52719 * 110.60506 * 341.99831 * 25 23 22 27 27 C 1.53320 * 108.38947 * 51.15286 * 26 25 23 28 28 C 1.50684 * 117.61008 * 179.41632 * 22 21 20 29 29 H 1.08992 * 109.47737 * 59.99853 * 1 2 3 30 30 H 1.09007 * 109.46830 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46903 * 299.99634 * 1 2 3 32 32 H 1.09002 * 109.46903 * 240.00366 * 2 1 3 33 33 H 1.09001 * 109.47328 * 120.00596 * 2 1 3 34 34 H 1.08997 * 109.47283 * 29.99660 * 4 3 2 35 35 H 1.08994 * 109.47295 * 150.00258 * 4 3 2 36 36 H 0.96997 * 119.99479 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46777 * 60.00476 * 15 13 3 38 38 H 1.08991 * 109.47564 * 299.99830 * 15 13 3 39 39 H 1.07992 * 120.19800 * 0.16868 * 20 19 17 40 40 H 1.08002 * 119.61829 * 179.97438 * 21 20 19 41 41 H 1.07998 * 119.78318 * 179.73353 * 24 23 22 42 42 H 1.09006 * 109.24939 * 102.28318 * 25 23 22 43 43 H 1.08994 * 109.25081 * 221.70222 * 25 23 22 44 44 H 1.09002 * 109.67817 * 170.88194 * 26 25 23 45 45 H 1.08997 * 109.67727 * 291.42887 * 26 25 23 46 46 H 1.08998 * 109.67874 * 49.83796 * 27 26 25 47 47 H 1.08997 * 109.67784 * 170.39284 * 27 26 25 48 48 H 1.09004 * 109.24948 * 282.54157 * 28 22 21 49 49 H 1.08998 * 109.25222 * 41.96682 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7039 6 1 4.3426 1.2303 -1.0964 7 6 4.1489 2.3897 -2.8781 8 7 5.3911 2.1835 -3.2576 9 14 3.0125 3.4352 -3.9292 10 1 3.1160 4.8555 -3.5082 11 1 3.4053 3.3121 -5.3560 12 1 1.6128 2.9692 -3.7592 13 6 2.2430 2.0165 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9914 1.3062 2.4722 16 8 2.3056 2.1960 3.5759 17 6 2.1330 1.7109 4.8207 18 8 1.7316 0.5754 4.9798 19 6 2.4320 2.5596 5.9923 20 6 2.8933 3.8659 5.8159 21 6 3.1705 4.6436 6.9169 22 6 2.9962 4.1438 8.2031 23 6 2.5357 2.8572 8.3840 24 6 2.2559 2.0636 7.2822 25 6 2.3097 2.2617 9.7493 26 6 3.0537 3.0633 10.8153 27 6 2.6930 4.5439 10.6466 28 6 3.3341 5.0520 9.3570 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0283 35 1 2.0955 3.1410 -1.1384 36 1 5.7171 2.5741 -4.0835 37 1 2.6214 0.4185 2.5300 38 1 0.9435 1.0124 2.5299 39 1 3.0314 4.2636 4.8214 40 1 3.5277 5.6537 6.7807 41 1 1.8993 1.0542 7.4248 42 1 1.2428 2.2701 9.9729 43 1 2.6696 1.2329 9.7567 44 1 2.7538 2.7229 11.8064 45 1 4.1283 2.9307 10.6906 46 1 1.6102 4.6533 10.5861 47 1 3.0732 5.1132 11.4947 48 1 4.4164 5.0857 9.4828 49 1 2.9663 6.0557 9.1441 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918903228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:35 Heat of formation + Delta-G solvation = -127.231482 kcal Electronic energy + Delta-G solvation = -29421.519443 eV Core-core repulsion = 25312.174219 eV Total energy + Delta-G solvation = -4109.345224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.96458 -41.01014 -40.41850 -37.74182 -37.05396 -36.90885 -34.89784 -33.61653 -32.17595 -31.76380 -30.66440 -29.91861 -28.76207 -25.69012 -24.50488 -24.21378 -24.01327 -23.29913 -22.29423 -20.50363 -20.22809 -19.15094 -18.94342 -18.29518 -17.86663 -17.68492 -17.10275 -16.72984 -16.40663 -16.30617 -15.95078 -15.46045 -15.38346 -14.93978 -14.80033 -14.69817 -14.59239 -14.46724 -14.21558 -13.99945 -13.84873 -13.73428 -13.48823 -13.42587 -13.19124 -13.12080 -12.59678 -12.50678 -12.45398 -12.40729 -12.18140 -12.03831 -11.92905 -11.83262 -11.75768 -11.72534 -11.35245 -11.27925 -10.85087 -10.82557 -9.91228 -9.68136 -9.55996 -8.35148 -6.40919 -0.43258 0.28608 1.13329 1.32861 1.33681 1.36908 1.45135 1.53576 2.28632 2.30401 2.64571 2.98800 3.34275 3.45945 3.61838 3.72304 3.84736 3.89814 3.91162 4.07379 4.09827 4.11203 4.16422 4.27592 4.34084 4.47154 4.56088 4.60079 4.66417 4.72952 4.80847 4.84505 4.86301 4.93275 4.97019 4.97288 5.01064 5.07749 5.09664 5.17595 5.24035 5.30033 5.34044 5.41379 5.43072 5.49146 5.53802 5.57198 5.85960 6.19720 6.42703 6.54021 6.60507 7.12153 7.26217 8.81697 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018698 B = 0.002075 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.104509 B =13490.399263 C =14453.590777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.226 3.774 5 C -0.539 4.539 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.944 5.944 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.502 3.498 14 O -0.573 6.573 15 C 0.061 3.939 16 O -0.343 6.343 17 C 0.510 3.490 18 O -0.526 6.526 19 C -0.149 4.149 20 C -0.075 4.075 21 C -0.134 4.134 22 C -0.038 4.038 23 C -0.093 4.093 24 C -0.057 4.057 25 C -0.081 4.081 26 C -0.120 4.120 27 C -0.120 4.120 28 C -0.087 4.087 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.021 0.979 36 H 0.269 0.731 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.151 0.849 41 H 0.139 0.861 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.961 0.550 28.863 30.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.577 4.577 6 H 0.047 0.953 7 C -0.188 4.188 8 N -0.584 5.584 9 Si 0.771 3.229 10 H -0.202 1.202 11 H -0.200 1.200 12 H -0.159 1.159 13 C 0.290 3.710 14 O -0.452 6.452 15 C -0.016 4.016 16 O -0.259 6.259 17 C 0.357 3.643 18 O -0.417 6.417 19 C -0.150 4.150 20 C -0.093 4.093 21 C -0.152 4.152 22 C -0.038 4.038 23 C -0.093 4.093 24 C -0.076 4.076 25 C -0.117 4.117 26 C -0.157 4.157 27 C -0.157 4.157 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.075 0.925 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.169 0.831 41 H 0.157 0.843 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.110 0.890 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.757 0.816 28.709 30.669 hybrid contribution 0.293 0.157 -1.455 1.493 sum -10.464 0.973 27.254 29.210 Atomic orbital electron populations 1.22182 0.93619 1.03968 1.02276 1.21905 0.95944 0.80726 1.04432 1.47963 1.63825 1.15343 1.05238 1.19391 0.95129 0.93174 0.81851 1.21537 0.97004 1.32344 1.06826 0.95297 1.25872 0.96791 0.97178 0.98962 1.70050 1.17411 1.46445 1.24474 0.85703 0.80500 0.78953 0.77732 1.20197 1.19975 1.15874 1.20458 0.78139 0.86671 0.85772 1.90673 1.46766 1.20086 1.87701 1.22861 1.04906 0.91963 0.81849 1.86602 1.79104 1.45305 1.14871 1.21642 0.73706 0.85751 0.83210 1.90784 1.44081 1.19933 1.86865 1.19018 1.10048 0.95315 0.90616 1.21508 0.94832 0.92387 1.00588 1.21450 1.01219 1.01285 0.91243 1.20339 0.94155 0.93851 0.95470 1.19870 1.00061 0.93552 0.95849 1.21385 0.95860 1.00493 0.89814 1.20559 1.02045 0.99718 0.89416 1.21577 1.00361 0.95073 0.98682 1.21582 1.01026 0.96175 0.96933 1.20687 1.02172 0.97803 0.91693 0.92748 0.88480 0.92360 0.89869 0.88970 0.92522 0.96052 0.92222 0.86850 0.85552 0.85356 0.83092 0.84334 0.89501 0.89988 0.89672 0.91700 0.91572 0.89582 0.89043 0.89035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.24 71.98 0.74 -2.88 16 2 C 0.09 2.69 5.93 86.38 0.51 3.21 16 3 N -0.59 -24.22 2.46 -826.15 -2.03 -26.25 16 4 C 0.23 11.01 4.23 85.64 0.36 11.37 16 5 C -0.54 -31.84 9.94 25.60 0.25 -31.59 16 6 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 7 C 0.01 0.60 5.47 84.66 0.46 1.06 16 8 N -0.94 -59.96 13.96 21.45 0.30 -59.66 16 9 Si 0.95 44.40 27.47 68.60 1.88 46.28 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 12 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 13 C 0.50 21.36 7.75 87.66 0.68 22.04 16 14 O -0.57 -30.07 16.08 15.77 0.25 -29.81 16 15 C 0.06 1.98 4.51 71.24 0.32 2.30 16 16 O -0.34 -12.10 9.03 -49.85 -0.45 -12.55 16 17 C 0.51 16.03 7.90 70.33 0.56 16.59 16 18 O -0.53 -17.18 16.13 19.91 0.32 -16.86 16 19 C -0.15 -3.98 5.87 -20.17 -0.12 -4.10 16 20 C -0.07 -1.87 9.62 22.47 0.22 -1.65 16 21 C -0.13 -2.53 9.58 22.33 0.21 -2.31 16 22 C -0.04 -0.61 5.75 -19.76 -0.11 -0.72 16 23 C -0.09 -1.60 5.73 -19.88 -0.11 -1.71 16 24 C -0.06 -1.25 9.16 22.62 0.21 -1.05 16 25 C -0.08 -0.90 5.66 29.74 0.17 -0.73 16 26 C -0.12 -0.95 5.98 30.61 0.18 -0.77 16 27 C -0.12 -0.88 5.98 30.61 0.18 -0.70 16 28 C -0.09 -0.84 5.67 29.75 0.17 -0.67 16 29 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.06 1.23 7.22 -2.39 -0.02 1.21 16 32 H 0.08 2.56 8.07 -2.39 -0.02 2.55 16 33 H 0.09 2.26 6.44 -2.39 -0.02 2.24 16 34 H 0.06 2.49 7.13 -2.39 -0.02 2.48 16 35 H 0.02 1.12 6.85 -2.39 -0.02 1.10 16 36 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.11 3.34 7.40 -2.39 -0.02 3.32 16 38 H 0.13 3.33 7.18 -2.39 -0.02 3.31 16 39 H 0.13 3.54 7.63 -2.91 -0.02 3.51 16 40 H 0.15 2.13 8.05 -2.91 -0.02 2.11 16 41 H 0.14 2.86 7.63 -2.91 -0.02 2.84 16 42 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 44 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.06 0.57 8.10 -2.39 -0.02 0.55 16 46 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 47 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.09 0.70 8.12 -2.39 -0.02 0.68 16 Total: -1.00 -80.91 402.09 6.05 -74.86 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.89 Total: 16.30 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 4.88 Total: 7.69 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.73 Total: -85.91 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: 0.13 Total: -59.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.88 Total: 46.28 kcal Total: -80.91 6.05 -74.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918903228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.372 kcal (2) G-P(sol) polarization free energy of solvation -80.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds