Wall clock time and date at job start Wed Apr 1 2020 04:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46891 * 2 1 4 4 C 1.46502 * 120.00144 * 269.99813 * 3 2 1 5 5 C 1.50705 * 109.46906 * 270.00319 * 4 3 2 6 6 H 1.07998 * 119.99982 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99915 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00117 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 120.00225 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46614 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47094 * 119.99315 * 9 7 5 12 12 H 1.48500 * 109.46871 * 239.99483 * 9 7 5 13 13 C 1.34778 * 119.99762 * 89.99794 * 3 2 1 14 14 O 1.21288 * 119.99611 * 179.97438 * 13 3 2 15 15 C 1.50696 * 120.00377 * 0.02562 * 13 3 2 16 16 O 1.45196 * 109.47357 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00262 * 180.02562 * 16 15 13 18 18 O 1.20828 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00154 * 179.97438 * 17 16 15 20 20 C 1.50706 * 109.46817 * 179.97438 * 19 17 16 21 21 C 1.38250 * 120.03292 * 90.00213 * 20 19 17 22 22 C 1.38096 * 119.93769 * 179.97438 * 21 20 19 23 23 C 1.38505 * 120.21439 * 0.02562 * 22 21 20 24 24 C 1.38214 * 119.84879 * 359.97438 * 23 22 21 25 25 C 1.38101 * 120.02966 * 269.72294 * 20 19 17 26 26 C 1.51363 * 109.76141 * 180.02562 * 24 23 22 27 27 C 1.54346 * 105.16887 * 342.81608 * 26 24 23 28 28 C 1.51367 * 130.39112 * 180.02562 * 23 22 21 29 29 H 1.08999 * 109.46868 * 179.97438 * 1 2 3 30 30 H 1.08989 * 109.47476 * 299.99946 * 1 2 3 31 31 H 1.09000 * 109.46969 * 60.00298 * 1 2 3 32 32 H 1.08996 * 109.47189 * 239.99816 * 2 1 3 33 33 H 1.09000 * 109.46969 * 119.99702 * 2 1 3 34 34 H 1.08999 * 109.46883 * 29.99625 * 4 3 2 35 35 H 1.08998 * 109.46781 * 150.00168 * 4 3 2 36 36 H 0.97001 * 120.00194 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.47344 * 59.99426 * 15 13 3 38 38 H 1.09000 * 109.47036 * 300.00402 * 15 13 3 39 39 H 1.09000 * 109.46670 * 60.00014 * 19 17 16 40 40 H 1.09000 * 109.47247 * 299.99728 * 19 17 16 41 41 H 1.08008 * 120.03110 * 0.02562 * 21 20 19 42 42 H 1.08003 * 119.89377 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.89649 * 0.02562 * 25 20 19 44 44 H 1.08997 * 110.30717 * 223.88703 * 26 24 23 45 45 H 1.09003 * 110.38376 * 101.77620 * 26 24 23 46 46 H 1.09000 * 110.82172 * 268.11378 * 27 26 24 47 47 H 1.08996 * 110.99529 * 144.64762 * 27 26 24 48 48 H 1.09000 * 110.30671 * 316.08872 * 28 23 22 49 49 H 1.09000 * 110.30356 * 78.24552 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0957 7 6 4.1494 2.3905 -2.8773 8 7 3.3495 3.1266 -3.6175 9 14 5.9139 2.0976 -3.4162 10 1 6.6015 1.2423 -2.4156 11 1 5.9219 1.4189 -4.7371 12 1 6.6211 3.3989 -3.5240 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4723 16 8 2.3060 2.1958 3.5759 17 6 2.1358 1.7119 4.8163 18 8 1.7374 0.5822 4.9747 19 6 2.4416 2.5774 6.0115 20 6 2.1685 1.8033 7.2753 21 6 3.1717 1.0494 7.8555 22 6 2.9194 0.3413 9.0139 23 6 1.6637 0.3832 9.5969 24 6 0.6608 1.1369 9.0170 25 6 0.9175 1.8510 7.8583 26 6 -0.6062 1.0204 9.8369 27 6 -0.3979 -0.2228 10.7277 28 6 1.1396 -0.2912 10.8466 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1383 36 1 3.6755 3.5171 -4.4434 37 1 2.6227 0.4187 2.5299 38 1 0.9444 1.0114 2.5302 39 1 1.8115 3.4664 5.9869 40 1 3.4901 2.8744 5.9863 41 1 4.1521 1.0150 7.4036 42 1 3.7035 -0.2478 9.4663 43 1 0.1354 2.4434 7.4068 44 1 -1.4674 0.8780 9.1842 45 1 -0.7424 1.9088 10.4535 46 1 -0.7894 -1.1170 10.2426 47 1 -0.8562 -0.0830 11.7066 48 1 1.4704 -1.3291 10.8835 49 1 1.4743 0.2451 11.7345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000918991222.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:50 Heat of formation + Delta-G solvation = -122.496345 kcal Electronic energy + Delta-G solvation = -29164.281179 eV Core-core repulsion = 25055.141286 eV Total energy + Delta-G solvation = -4109.139893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.88605 -41.01486 -40.47722 -37.82355 -37.02952 -36.76241 -34.94772 -33.19466 -31.84043 -31.63594 -30.61848 -28.94974 -28.37192 -27.27202 -24.92312 -24.21068 -23.58791 -22.54824 -21.67691 -20.91054 -20.25381 -19.00257 -18.65277 -18.07852 -17.89729 -17.40926 -17.03993 -16.82547 -16.67162 -16.28216 -15.94149 -15.85789 -15.60718 -14.85652 -14.76280 -14.56444 -14.16249 -14.14400 -13.92626 -13.80045 -13.69924 -13.61470 -13.41227 -13.30004 -13.09152 -12.99136 -12.70510 -12.52633 -12.50226 -12.24104 -12.21009 -12.06671 -12.02674 -11.83008 -11.80040 -11.70080 -11.65982 -11.57914 -10.74560 -10.65879 -9.70608 -9.55883 -9.35218 -8.24143 -6.38589 0.26690 0.46634 1.08883 1.33231 1.36596 1.39043 1.50552 1.60604 2.31477 2.43786 2.81922 3.05922 3.39955 3.42196 3.61988 3.68362 3.77748 3.94722 3.99858 4.06079 4.12368 4.13824 4.18792 4.29276 4.36161 4.47331 4.53811 4.56917 4.57399 4.74221 4.80877 4.86724 4.91307 4.92768 4.95264 5.01416 5.07297 5.16656 5.19521 5.27896 5.30628 5.33891 5.34255 5.48256 5.53348 5.59128 5.70398 5.78631 6.03170 6.07853 6.53586 6.65843 6.70790 7.20006 7.35557 8.83454 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.001882 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.488611 B =14873.202234 C =15428.851919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.595 5.595 4 C 0.262 3.738 5 C -0.544 4.544 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.968 3.032 10 H -0.267 1.267 11 H -0.269 1.269 12 H -0.282 1.282 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.063 3.937 16 O -0.349 6.349 17 C 0.464 3.536 18 O -0.524 6.524 19 C -0.067 4.067 20 C -0.088 4.088 21 C -0.115 4.115 22 C -0.118 4.118 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.105 4.105 26 C -0.084 4.084 27 C -0.118 4.118 28 C -0.082 4.082 29 H 0.097 0.903 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.030 0.970 35 H 0.000 1.000 36 H 0.268 0.732 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.196 -8.809 29.455 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.566 5.566 9 Si 0.793 3.207 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.286 3.714 14 O -0.457 6.457 15 C -0.014 4.014 16 O -0.265 6.265 17 C 0.308 3.692 18 O -0.413 6.413 19 C -0.104 4.104 20 C -0.088 4.088 21 C -0.133 4.133 22 C -0.135 4.135 23 C -0.108 4.108 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.155 4.155 28 C -0.119 4.119 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.048 0.952 35 H 0.018 0.982 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.089 0.911 47 H 0.115 0.885 48 H 0.099 0.901 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.137 -8.480 29.286 31.313 hybrid contribution 0.872 0.152 -1.162 1.461 sum -6.264 -8.327 28.124 29.992 Atomic orbital electron populations 1.22172 0.94326 1.03763 1.01841 1.21855 0.95559 0.81029 1.04340 1.48211 1.63591 1.15219 1.05726 1.18803 0.95619 0.91692 0.79745 1.21730 0.97792 1.32138 1.06627 0.92756 1.25855 1.02426 0.94437 0.96416 1.70054 1.37678 1.34098 1.14806 0.85355 0.78963 0.78011 0.78392 1.19156 1.19385 1.20756 1.20552 0.78326 0.86653 0.85834 1.90678 1.47102 1.20135 1.87757 1.22780 1.04505 0.92048 0.82076 1.86578 1.79121 1.45562 1.15234 1.24329 0.73536 0.87194 0.84150 1.90665 1.43073 1.20927 1.86643 1.20414 1.07571 0.97555 0.84824 1.19237 0.94569 0.99595 0.95428 1.21148 0.99507 0.96546 0.96084 1.20843 0.96705 1.00049 0.95949 1.21026 0.93742 0.98227 0.97815 1.20899 0.97621 0.97380 0.95466 1.20677 0.96231 0.99882 0.95512 1.21123 0.94060 0.99752 0.97105 1.22327 0.94986 0.97457 1.00757 1.21134 0.95687 1.00744 0.94343 0.88434 0.92489 0.93599 0.89956 0.88569 0.95221 0.98166 0.92350 0.86750 0.86313 0.84602 0.84545 0.84793 0.84510 0.85528 0.90583 0.89122 0.91142 0.88504 0.90051 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.32 16 2 C 0.09 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -25.38 2.46 -826.14 -2.03 -27.41 16 4 C 0.26 14.14 5.16 85.63 0.44 14.58 16 5 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 9 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.50 21.52 7.75 87.66 0.68 22.20 16 14 O -0.58 -30.99 16.08 15.74 0.25 -30.74 16 15 C 0.06 1.99 4.50 71.23 0.32 2.31 16 16 O -0.35 -11.30 9.75 -45.07 -0.44 -11.74 16 17 C 0.46 12.43 7.95 71.24 0.57 13.00 16 18 O -0.52 -16.04 15.78 21.96 0.35 -15.69 16 19 C -0.07 -1.26 5.94 29.10 0.17 -1.09 16 20 C -0.09 -1.78 4.37 -19.89 -0.09 -1.87 16 21 C -0.11 -2.22 9.70 22.24 0.22 -2.01 16 22 C -0.12 -2.10 10.04 22.30 0.22 -1.88 16 23 C -0.11 -1.88 6.14 -19.59 -0.12 -2.00 16 24 C -0.11 -2.08 6.14 -19.60 -0.12 -2.20 16 25 C -0.11 -2.08 9.69 22.30 0.22 -1.87 16 26 C -0.08 -1.06 6.77 30.52 0.21 -0.85 16 27 C -0.12 -1.16 7.08 31.51 0.22 -0.93 16 28 C -0.08 -0.94 6.77 30.52 0.21 -0.73 16 29 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.34 7.22 -2.39 -0.02 1.33 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.60 8.07 -2.39 -0.02 2.58 16 33 H 0.10 2.33 6.44 -2.39 -0.02 2.31 16 34 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 35 H 0.00 0.01 7.42 -2.39 -0.02 0.00 16 36 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.11 3.18 7.39 -2.38 -0.02 3.16 16 38 H 0.12 3.17 7.18 -2.39 -0.02 3.15 16 39 H 0.14 2.03 8.08 -2.39 -0.02 2.01 16 40 H 0.14 2.06 8.09 -2.39 -0.02 2.04 16 41 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 43 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -79.52 410.64 6.48 -73.04 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.94 Total: 14.71 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.10 Total: 6.46 kcal Atomic # 7 Polarization: -81.31 SS G_CDS: -1.74 Total: -83.06 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: 0.16 Total: -58.16 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -79.52 6.48 -73.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000918991222.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.455 kcal (2) G-P(sol) polarization free energy of solvation -79.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds