Wall clock time and date at job start Wed Apr 1 2020 04:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46768 * 124.34864 * 2 1 4 4 C 1.54480 * 105.47334 * 196.99794 * 3 2 1 5 5 C 1.54629 * 101.76666 * 334.58855 * 4 3 2 6 6 H 1.08998 * 110.59948 * 266.06716 * 5 4 3 7 7 C 1.50701 * 110.48811 * 143.47095 * 5 4 3 8 8 O 1.21283 * 119.99698 * 3.77725 * 7 5 4 9 9 N 1.34777 * 120.00082 * 183.77216 * 7 5 4 10 10 C 1.46497 * 120.00163 * 180.02562 * 9 7 5 11 11 C 1.52994 * 109.47296 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.52570 * 304.91957 * 11 10 9 13 13 C 1.53198 * 109.49798 * 65.00065 * 11 10 9 14 14 N 1.46925 * 108.77794 * 174.58369 * 13 11 10 15 15 C 1.36937 * 120.62758 * 126.41317 * 14 13 11 16 16 H 1.08002 * 120.00161 * 332.28432 * 15 14 13 17 17 C 1.38810 * 119.99736 * 152.28879 * 15 14 13 18 18 N 1.31619 * 120.00165 * 342.59842 * 17 15 14 19 19 Si 1.86799 * 119.99844 * 162.60156 * 17 15 14 20 20 H 1.48496 * 109.47600 * 94.34872 * 19 17 15 21 21 H 1.48511 * 109.46930 * 214.34747 * 19 17 15 22 22 H 1.48497 * 109.47434 * 334.34363 * 19 17 15 23 23 C 1.46923 * 118.73715 * 306.39481 * 14 13 11 24 24 C 1.53192 * 108.78128 * 53.60792 * 23 14 13 25 25 C 1.53042 * 109.30832 * 305.36395 * 24 23 14 26 26 F 1.39901 * 109.45901 * 181.38182 * 25 24 23 27 27 F 1.39897 * 109.46208 * 301.35683 * 25 24 23 28 28 C 1.34416 * 124.34981 * 179.97438 * 2 1 3 29 29 O 1.21279 * 124.94347 * 359.63886 * 28 2 1 30 30 H 1.08998 * 109.47294 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46783 * 300.04543 * 1 2 3 32 32 H 1.08997 * 109.46930 * 60.04031 * 1 2 3 33 33 H 1.08997 * 110.24644 * 316.00250 * 3 2 1 34 34 H 1.09004 * 110.24207 * 77.91461 * 3 2 1 35 35 H 1.08994 * 110.97384 * 216.47033 * 4 3 2 36 36 H 1.09002 * 110.96725 * 92.70239 * 4 3 2 37 37 H 0.97001 * 119.99923 * 0.02562 * 9 7 5 38 38 H 1.09004 * 109.47317 * 59.99855 * 10 9 7 39 39 H 1.08998 * 109.47156 * 300.00165 * 10 9 7 40 40 H 1.09004 * 109.58120 * 54.80014 * 13 11 10 41 41 H 1.08998 * 109.58338 * 294.37224 * 13 11 10 42 42 H 0.97003 * 120.00361 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.58598 * 173.39462 * 23 14 13 44 44 H 1.09000 * 109.58766 * 293.81574 * 23 14 13 45 45 H 1.09003 * 109.49339 * 65.31208 * 24 23 14 46 46 H 1.08995 * 109.49985 * 185.41191 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7012 0.7487 -0.4352 5 6 3.6899 -0.7378 -0.0095 6 1 4.1197 -0.8551 0.9852 7 6 4.4406 -1.5787 -1.0097 8 8 5.0043 -1.0502 -1.9445 9 7 4.4855 -2.9179 -0.8655 10 6 5.2157 -3.7353 -1.8375 11 6 5.1109 -5.2102 -1.4446 12 1 5.4602 -5.3402 -0.4203 13 6 3.6515 -5.6646 -1.5486 14 7 3.5871 -7.1104 -1.2953 15 6 2.7451 -7.6145 -0.3403 16 1 2.4686 -7.0088 0.5101 17 6 2.2470 -8.9042 -0.4651 18 7 2.2897 -9.5163 -1.6294 19 14 1.5160 -9.7708 1.0195 20 1 0.0448 -9.5695 1.0356 21 1 1.8161 -11.2232 0.9423 22 1 2.1060 -9.2089 2.2610 23 6 4.4430 -8.0050 -2.0864 24 6 5.8935 -7.5245 -1.9764 25 6 5.9717 -6.0528 -2.3887 26 9 7.3001 -5.6194 -2.3196 27 9 5.5024 -5.9102 -3.6989 28 6 2.2235 -1.1097 0.0005 29 8 1.7947 -2.2442 0.0073 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5146 0.8896 32 1 -0.3633 0.5132 -0.8903 33 1 1.8986 1.9382 -0.7103 34 1 2.3292 1.6439 1.0001 35 1 4.4754 1.3010 0.0972 36 1 3.8273 0.8446 -1.5137 37 1 4.0343 -3.3406 -0.1180 38 1 6.2639 -3.4364 -1.8490 39 1 4.7860 -3.5915 -2.8288 40 1 3.2729 -5.4516 -2.5483 41 1 3.0509 -5.1367 -0.8079 42 1 1.9413 -10.4174 -1.7168 43 1 4.3645 -9.0214 -1.7005 44 1 4.1289 -7.9829 -3.1299 45 1 6.2354 -7.6327 -0.9470 46 1 6.5252 -8.1209 -2.6347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046964850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:51 Heat of formation + Delta-G solvation = -168.086557 kcal Electronic energy + Delta-G solvation = -31994.335252 eV Core-core repulsion = 27361.281641 eV Total energy + Delta-G solvation = -4633.053611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -50.01977 -47.97193 -42.01928 -40.22105 -38.96797 -37.57414 -36.38490 -34.44140 -33.86442 -32.35337 -31.99326 -29.18632 -27.79043 -27.21753 -26.72193 -24.21458 -23.59400 -22.71912 -21.81703 -21.21357 -20.60465 -19.08143 -18.50985 -18.31326 -17.92540 -17.77341 -17.24994 -17.01858 -16.92168 -16.61681 -16.29695 -16.01851 -15.51676 -15.41044 -15.04564 -14.81583 -14.78109 -14.64996 -14.58512 -14.29417 -14.08181 -13.84454 -13.74738 -13.43868 -13.29856 -13.21148 -13.16535 -13.06700 -13.01906 -12.69672 -12.57587 -12.31302 -12.21113 -12.01855 -11.93583 -11.66946 -11.43774 -11.12159 -10.93266 -10.59552 -10.21663 -9.74221 -8.83109 -7.93222 -5.39703 1.17224 1.48069 1.49636 1.53039 1.59807 1.95784 2.14681 2.48095 2.76528 3.13506 3.18321 3.20434 3.23447 3.34731 3.47951 3.56001 3.77946 3.88849 3.97338 4.04465 4.16160 4.20999 4.35973 4.43018 4.46450 4.54685 4.59471 4.65326 4.72526 4.74384 4.83128 4.86228 4.87670 5.00176 5.04347 5.15311 5.26114 5.29216 5.49878 5.55966 5.63650 5.98454 6.31411 6.36843 6.99010 7.05676 7.06868 7.73309 8.26124 9.15034 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010218 B = 0.003731 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.693090 B = 7502.907194 C = 9738.237171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.620 5.620 3 C 0.102 3.898 4 C -0.110 4.110 5 C -0.143 4.143 6 H 0.167 0.833 7 C 0.527 3.473 8 O -0.568 6.568 9 N -0.709 5.709 10 C 0.135 3.865 11 C -0.138 4.138 12 H 0.119 0.881 13 C 0.158 3.842 14 N -0.605 5.605 15 C -0.267 4.267 16 H 0.072 0.928 17 C -0.045 4.045 18 N -0.934 5.934 19 Si 0.969 3.031 20 H -0.290 1.290 21 H -0.290 1.290 22 H -0.266 1.266 23 C 0.177 3.823 24 C -0.168 4.168 25 C 0.301 3.699 26 F -0.204 7.204 27 F -0.210 7.210 28 C 0.510 3.490 29 O -0.560 6.560 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.413 0.587 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.009 0.991 41 H 0.070 0.930 42 H 0.252 0.748 43 H 0.077 0.923 44 H 0.003 0.997 45 H 0.101 0.899 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 22.328 6.670 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.354 5.354 3 C -0.020 4.020 4 C -0.147 4.147 5 C -0.167 4.167 6 H 0.184 0.816 7 C 0.313 3.687 8 O -0.447 6.447 9 N -0.360 5.360 10 C 0.011 3.989 11 C -0.160 4.160 12 H 0.137 0.863 13 C 0.032 3.968 14 N -0.327 5.327 15 C -0.396 4.396 16 H 0.090 0.910 17 C -0.240 4.240 18 N -0.579 5.579 19 Si 0.797 3.203 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.190 1.190 23 C 0.051 3.949 24 C -0.207 4.207 25 C 0.265 3.735 26 F -0.185 7.185 27 F -0.191 7.191 28 C 0.296 3.704 29 O -0.439 6.439 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.098 0.902 37 H 0.250 0.750 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.027 0.973 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.021 0.979 45 H 0.119 0.881 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.627 21.974 5.946 23.051 hybrid contribution -0.805 -1.204 0.271 1.473 sum 2.821 20.770 6.216 21.864 Atomic orbital electron populations 1.21737 0.76769 1.03166 1.03629 1.48287 1.07528 1.07555 1.72005 1.22451 0.88807 0.86228 1.04465 1.22659 0.98316 0.89990 1.03780 1.22257 0.93151 0.98575 1.02700 0.81596 1.20350 0.80165 0.82326 0.85877 1.90687 1.47531 1.72798 1.33727 1.45947 1.53639 1.06594 1.29815 1.21123 0.97359 0.88102 0.92364 1.22753 0.98558 0.93623 1.01017 0.86299 1.20871 0.92065 0.85504 0.98366 1.44333 1.45060 1.00837 1.42497 1.19510 1.22071 0.98525 0.99503 0.90997 1.25813 0.99417 1.00022 0.98790 1.70179 1.50345 1.13966 1.23438 0.85246 0.77816 0.77488 0.79775 1.21665 1.21639 1.19005 1.20586 0.85376 0.95625 0.93267 1.23097 1.01411 0.91705 1.04500 1.21010 0.76433 0.97091 0.79000 1.92968 1.37567 1.91552 1.96367 1.92951 1.88661 1.97009 1.40500 1.20771 0.89126 0.84804 0.75705 1.90807 1.78802 1.22568 1.51722 0.92239 0.89215 0.90325 0.88023 0.87542 0.85344 0.90225 0.74964 0.90084 0.92665 0.97333 0.91128 0.93838 0.90505 0.97876 0.88069 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 11.14 127.77 1.42 2.67 16 2 N -0.62 -10.43 3.33 -842.88 -2.81 -13.24 16 3 C 0.10 0.85 7.35 86.83 0.64 1.49 16 4 C -0.11 -1.31 6.45 31.65 0.20 -1.10 16 5 C -0.14 -2.64 3.33 -11.54 -0.04 -2.68 16 6 H 0.17 2.00 8.14 -2.39 -0.02 1.98 16 7 C 0.53 14.42 7.16 87.66 0.63 15.05 16 8 O -0.57 -18.74 15.52 -3.04 -0.05 -18.79 16 9 N -0.71 -20.51 5.03 -463.07 -2.33 -22.83 16 10 C 0.14 4.33 4.83 86.38 0.42 4.75 16 11 C -0.14 -4.77 2.03 -10.71 -0.02 -4.79 16 12 H 0.12 3.75 8.14 -2.39 -0.02 3.73 16 13 C 0.16 6.77 5.40 86.36 0.47 7.24 16 14 N -0.60 -30.09 2.99 -699.08 -2.09 -32.18 16 15 C -0.27 -14.39 9.58 84.03 0.81 -13.59 16 16 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 17 C -0.04 -2.45 4.91 84.86 0.42 -2.03 16 18 N -0.93 -54.53 11.19 21.65 0.24 -54.29 16 19 Si 0.97 44.08 29.59 68.60 2.03 46.11 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 23 C 0.18 8.46 5.11 86.36 0.44 8.90 16 24 C -0.17 -6.21 5.62 30.67 0.17 -6.03 16 25 C 0.30 10.86 1.63 30.62 0.05 10.91 16 26 F -0.20 -6.79 16.41 44.97 0.74 -6.06 16 27 F -0.21 -8.43 15.72 44.97 0.71 -7.73 16 28 C 0.51 12.27 7.44 87.90 0.65 12.92 16 29 O -0.56 -18.90 16.17 -3.03 -0.05 -18.95 16 30 H 0.06 1.18 7.53 -2.39 -0.02 1.16 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 0.32 8.14 -2.38 -0.02 0.30 16 35 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.35 7.06 -2.39 -0.02 1.33 16 37 H 0.41 11.65 6.90 -92.71 -0.64 11.01 16 38 H 0.08 2.49 7.63 -2.38 -0.02 2.48 16 39 H 0.05 1.99 7.97 -2.39 -0.02 1.97 16 40 H 0.01 0.41 7.92 -2.38 -0.02 0.39 16 41 H 0.07 3.01 7.13 -2.39 -0.02 2.99 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.08 4.04 6.04 -2.38 -0.01 4.03 16 44 H 0.00 0.16 7.92 -2.39 -0.02 0.14 16 45 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 46 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -74.77 374.84 3.02 -71.76 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.37 Total: 22.52 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 6.26 Total: 33.69 kcal Atomic # 7 Polarization: -115.56 SS G_CDS: -6.99 Total: -122.55 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -0.10 Total: -37.74 kcal Atomic # 9 Polarization: -15.23 SS G_CDS: 1.44 Total: -13.78 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -74.77 3.02 -71.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046964850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.331 kcal (2) G-P(sol) polarization free energy of solvation -74.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds