Wall clock time and date at job start Wed Apr 1 2020 04:42:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.39899 * 125.74458 * 2 1
4 4 C 1.30292 * 109.23129 * 180.02562 * 3 2 1
5 5 C 1.41485 * 108.19103 * 0.02562 * 4 3 2
6 6 C 1.46766 * 126.51630 * 180.26337 * 5 4 3
7 7 O 1.21694 * 119.99708 * 179.68788 * 6 5 4
8 8 N 1.34779 * 120.00378 * 359.67887 * 6 5 4
9 9 C 1.46494 * 120.00118 * 180.02562 * 8 6 5
10 10 C 1.50701 * 109.47045 * 180.02562 * 9 8 6
11 11 C 1.40071 * 126.12441 * 259.68786 * 10 9 8
12 12 N 1.31016 * 108.25272 * 179.97438 * 11 10 9
13 13 N 1.39745 * 108.17787 * 0.52954 * 12 11 10
14 14 C 1.34650 * 126.12520 * 80.00023 * 10 9 8
15 15 C 1.51030 * 127.90672 * 359.44446 * 14 10 9
16 16 N 1.47498 * 106.99668 * 169.57092 * 15 14 10
17 17 C 1.36943 * 121.01583 * 222.97359 * 16 15 14
18 18 H 1.07998 * 120.00307 * 155.89153 * 17 16 15
19 19 C 1.38812 * 119.99342 * 335.89386 * 17 16 15
20 20 N 1.31615 * 120.00363 * 344.44640 * 19 17 16
21 21 Si 1.86805 * 119.99480 * 164.45005 * 19 17 16
22 22 H 1.48496 * 109.47516 * 90.00035 * 21 19 17
23 23 H 1.48506 * 109.46583 * 209.99971 * 21 19 17
24 24 H 1.48500 * 109.46962 * 329.99510 * 21 19 17
25 25 C 1.47086 * 117.97785 * 42.97182 * 16 15 14
26 26 C 1.46549 * 127.32444 * 179.23278 * 13 12 11
27 27 C 1.34849 * 125.75117 * 180.02562 * 2 1 3
28 28 N 1.38010 * 126.44272 * 359.97438 * 27 2 1
29 29 H 1.09003 * 109.46602 * 269.94764 * 1 2 3
30 30 H 1.08999 * 109.47480 * 29.95293 * 1 2 3
31 31 H 1.09002 * 109.46931 * 149.96023 * 1 2 3
32 32 H 1.07993 * 125.90097 * 179.97438 * 4 3 2
33 33 H 0.97000 * 119.99198 * 0.02562 * 8 6 5
34 34 H 1.09005 * 109.47284 * 299.99841 * 9 8 6
35 35 H 1.08996 * 109.47257 * 60.00553 * 9 8 6
36 36 H 1.07995 * 125.87474 * 0.09182 * 11 10 9
37 37 H 1.09006 * 109.95000 * 288.93745 * 15 14 10
38 38 H 1.09001 * 109.95318 * 50.19941 * 15 14 10
39 39 H 0.97001 * 119.99686 * 179.97438 * 20 19 17
40 40 H 1.09003 * 109.51330 * 176.52117 * 25 16 15
41 41 H 1.09003 * 109.50737 * 56.37438 * 25 16 15
42 42 H 1.09002 * 109.50915 * 281.39697 * 26 13 12
43 43 H 1.08996 * 109.51241 * 41.54107 * 26 13 12
44 44 H 0.97001 * 119.99630 * 179.97438 * 28 27 2
45 45 H 0.96995 * 120.00292 * 359.97438 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2822 1.1355 0.0000
4 6 3.5314 0.7651 -0.0006
5 6 3.5728 -0.6491 -0.0015
6 6 4.7774 -1.4875 0.0030
7 8 4.6747 -2.7001 0.0073
8 7 5.9974 -0.9146 0.0023
9 6 7.1997 -1.7515 0.0063
10 6 8.4237 -0.8724 0.0051
11 6 9.2139 -0.5585 -1.1080
12 7 10.1839 0.2290 -0.7137
13 7 10.0492 0.4312 0.6625
14 6 8.9570 -0.2527 1.0750
15 6 8.4641 -0.2767 2.5024
16 7 9.5171 0.3377 3.3326
17 6 9.8773 -0.2101 4.5349
18 1 10.8589 -0.0192 4.9429
19 6 8.9807 -1.0107 5.2291
20 7 7.7046 -1.0022 4.9068
21 14 9.5854 -2.1002 6.6208
22 1 9.5224 -1.3493 7.9005
23 1 8.7262 -3.3080 6.7129
24 1 10.9879 -2.5095 6.3554
25 6 10.1686 1.5568 2.8298
26 6 10.9175 1.2291 1.5325
27 6 2.2529 -1.0944 -0.0005
28 7 1.8308 -2.4084 -0.0006
29 1 -0.3632 -0.0009 1.0277
30 1 -0.3634 0.8904 -0.5131
31 1 -0.3633 -0.8896 -0.5145
32 1 4.3872 1.4238 -0.0011
33 1 6.0791 0.0519 -0.0009
34 1 7.2035 -2.3778 0.8984
35 1 7.2053 -2.3837 -0.8816
36 1 9.0505 -0.9044 -2.1179
37 1 7.5415 0.2976 2.5870
38 1 8.2934 -1.3055 2.8197
39 1 7.0782 -1.5620 5.3917
40 1 10.8746 1.9257 3.5739
41 1 9.4139 2.3185 2.6339
42 1 11.8198 0.6632 1.7642
43 1 11.1879 2.1556 1.0261
44 1 2.4824 -3.1270 -0.0013
45 1 0.8828 -2.6133 0.0001
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001069858849.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:30
Heat of formation + Delta-G solvation = 148.874308 kcal
Electronic energy + Delta-G solvation = -30226.602402 eV
Core-core repulsion = 26090.275182 eV
Total energy + Delta-G solvation = -4136.327219 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-41.30898 -40.89986 -38.62118 -36.25399 -35.15906 -34.37890 -33.15932 -32.87546
-31.20876 -30.16756 -29.23839 -28.28838 -27.13591 -25.92225 -24.68076 -23.45649
-22.34411 -21.69217 -20.82794 -20.08614 -19.85209 -18.42303 -17.95209 -16.91382
-16.67546 -16.10619 -15.94294 -15.83005 -15.42412 -15.03861 -14.69438 -14.61463
-14.36929 -13.83308 -13.63037 -13.43499 -13.36657 -13.19990 -13.10118 -12.99146
-12.83614 -12.38230 -12.34820 -11.64546 -11.53123 -11.31000 -11.24989 -10.93959
-10.86145 -10.84165 -10.68497 -10.16799 -10.11256 -10.04524 -9.56995 -9.07894
-8.86298 -8.59101 -8.49252 -7.86129 -7.80237 -7.03619 -5.97241 -3.39902
1.87569 2.15655 2.34269 2.49400 3.04309 3.10198 3.31062 3.39282
3.40759 3.58629 3.85355 4.01083 4.34920 4.37324 4.84313 4.90949
5.02094 5.10171 5.11201 5.23635 5.25764 5.42270 5.43834 5.55734
5.61333 5.66147 5.73186 5.82510 5.93947 6.22649 6.26156 6.27343
6.44361 6.46548 6.56194 6.63041 6.91530 6.98502 7.15753 7.21570
7.23962 7.34498 7.61635 7.66289 7.77746 8.06821 8.13771 8.29825
8.74054 8.96127 9.58655 10.11425 11.13426
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.009937 B = 0.003353 C = 0.002855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2816.995893 B = 8348.002184 C = 9805.104325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.103 3.897
2 N -0.404 5.404
3 N -0.310 5.310
4 C 0.117 3.883
5 C -0.365 4.365
6 C 0.604 3.396
7 O -0.576 6.576
8 N -0.715 5.715
9 C 0.214 3.786
10 C -0.287 4.287
11 C 0.056 3.944
12 N -0.319 5.319
13 N -0.358 5.358
14 C 0.119 3.881
15 C 0.231 3.769
16 N -0.597 5.597
17 C -0.264 4.264
18 H 0.073 0.927
19 C 0.009 3.991
20 N -0.901 5.901
21 Si 0.907 3.093
22 H -0.285 1.285
23 H -0.287 1.287
24 H -0.278 1.278
25 C 0.129 3.871
26 C 0.114 3.886
27 C 0.431 3.569
28 N -0.831 5.831
29 H 0.073 0.927
30 H 0.093 0.907
31 H 0.079 0.921
32 H 0.188 0.812
33 H 0.397 0.603
34 H 0.072 0.928
35 H 0.067 0.933
36 H 0.175 0.825
37 H 0.058 0.942
38 H 0.109 0.891
39 H 0.259 0.741
40 H 0.084 0.916
41 H 0.036 0.964
42 H 0.075 0.925
43 H 0.079 0.921
44 H 0.432 0.568
45 H 0.397 0.603
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.166 1.600 -11.150 15.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 N -0.193 5.193
3 N -0.128 5.128
4 C -0.073 4.073
5 C -0.384 4.384
6 C 0.394 3.606
7 O -0.458 6.458
8 N -0.364 5.364
9 C 0.090 3.910
10 C -0.299 4.299
11 C -0.131 4.131
12 N -0.139 5.139
13 N -0.140 5.140
14 C -0.012 4.012
15 C 0.105 3.895
16 N -0.319 5.319
17 C -0.393 4.393
18 H 0.090 0.910
19 C -0.191 4.191
20 N -0.544 5.544
21 Si 0.736 3.264
22 H -0.212 1.212
23 H -0.213 1.213
24 H -0.204 1.204
25 C 0.001 3.999
26 C -0.010 4.010
27 C 0.196 3.804
28 N -0.381 5.381
29 H 0.092 0.908
30 H 0.111 0.889
31 H 0.097 0.903
32 H 0.205 0.795
33 H 0.231 0.769
34 H 0.090 0.910
35 H 0.085 0.915
36 H 0.192 0.808
37 H 0.075 0.925
38 H 0.127 0.873
39 H 0.069 0.931
40 H 0.102 0.898
41 H 0.054 0.946
42 H 0.093 0.907
43 H 0.097 0.903
44 H 0.269 0.731
45 H 0.225 0.775
Dipole moment (debyes) X Y Z Total
from point charges -11.092 2.438 -11.305 16.024
hybrid contribution -0.008 -1.525 0.945 1.794
sum -11.100 0.913 -10.360 15.211
Atomic orbital electron populations
1.21766 0.74510 1.04249 1.03316 1.48145 1.06273 1.02472 1.62390
1.77117 1.01845 1.05228 1.28620 1.23790 0.95148 0.93598 0.94785
1.19349 0.91000 0.93633 1.34438 1.16886 0.82172 0.86583 0.75000
1.90649 1.87036 1.14329 1.53739 1.45836 1.05025 1.10313 1.75274
1.19254 0.79244 0.90611 1.01912 1.19457 1.04378 1.13272 0.92784
1.23669 0.93320 0.96951 0.99113 1.77162 1.23948 1.22025 0.90802
1.48484 1.21810 1.38521 1.05146 1.22575 0.87717 0.91796 0.99143
1.19917 0.90018 1.01335 0.78275 1.44205 1.42806 1.24909 1.19999
1.19135 0.97201 1.27081 0.95890 0.90954 1.25027 0.94768 1.01123
0.98132 1.69945 1.00857 1.40776 1.42858 0.86235 0.78191 0.80238
0.81738 1.21203 1.21291 1.20385 1.21286 0.96357 0.90140 0.92163
1.22549 0.93388 0.94065 0.90970 1.18048 0.89527 0.81849 0.90928
1.41772 1.11043 1.02802 1.82496 0.90815 0.88861 0.90274 0.79537
0.76895 0.91006 0.91517 0.80798 0.92486 0.87342 0.93077 0.89812
0.94565 0.90660 0.90264 0.73120 0.77490
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 0.68 11.25 59.85 0.67 1.35 16
2 N -0.40 -4.67 4.00 -66.82 -0.27 -4.94 16
3 N -0.31 -4.21 12.47 30.88 0.38 -3.83 16
4 C 0.12 1.55 11.49 -16.97 -0.20 1.36 16
5 C -0.36 -5.31 6.15 -104.82 -0.64 -5.96 16
6 C 0.60 9.88 7.79 -12.81 -0.10 9.78 16
7 O -0.58 -10.60 15.14 5.19 0.08 -10.52 16
8 N -0.72 -10.97 5.54 -62.77 -0.35 -11.32 16
9 C 0.21 3.51 5.95 -5.20 -0.03 3.48 16
10 C -0.29 -5.01 5.46 -105.20 -0.57 -5.59 16
11 C 0.06 0.92 11.97 -17.21 -0.21 0.72 16
12 N -0.32 -5.94 12.61 30.70 0.39 -5.55 16
13 N -0.36 -6.91 4.03 -56.90 -0.23 -7.14 16
14 C 0.12 2.37 6.71 -82.17 -0.55 1.82 16
15 C 0.23 5.24 5.11 -4.49 -0.02 5.22 16
16 N -0.60 -13.96 3.01 -172.92 -0.52 -14.48 16
17 C -0.26 -6.80 9.66 -15.06 -0.15 -6.94 16
18 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16
19 C 0.01 0.24 5.00 -17.43 -0.09 0.15 16
20 N -0.90 -24.73 11.07 55.49 0.61 -24.12 16
21 Si 0.91 20.93 29.58 -169.99 -5.03 15.90 16
22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16
24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16
25 C 0.13 2.42 6.50 -3.55 -0.02 2.40 16
26 C 0.11 1.95 7.45 -3.84 -0.03 1.93 16
27 C 0.43 5.47 7.98 -153.78 -1.23 4.24 16
28 N -0.83 -8.16 9.02 31.40 0.28 -7.87 16
29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16
31 H 0.08 0.31 7.46 -51.93 -0.39 -0.08 16
32 H 0.19 1.99 7.50 -52.49 -0.39 1.59 16
33 H 0.40 5.55 7.41 -40.82 -0.30 5.25 16
34 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16
35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16
36 H 0.18 2.25 8.06 -52.49 -0.42 1.82 16
37 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16
38 H 0.11 2.78 6.46 -51.93 -0.34 2.44 16
39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
40 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16
41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
42 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16
43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16
44 H 0.43 4.85 7.01 -40.82 -0.29 4.56 16
45 H 0.40 2.42 8.04 -40.82 -0.33 2.09 16
LS Contribution 377.48 15.07 5.69 5.69
Total: -1.00 -33.58 377.48 -7.92 -41.50
By element:
Atomic # 1 Polarization: 18.52 SS G_CDS: -5.80 Total: 12.72 kcal
Atomic # 6 Polarization: 17.12 SS G_CDS: -3.16 Total: 13.95 kcal
Atomic # 7 Polarization: -79.55 SS G_CDS: 0.31 Total: -79.24 kcal
Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.90 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -33.58 -7.92 -41.50 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001069858849.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 190.372 kcal
(2) G-P(sol) polarization free energy of solvation -33.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.793 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.498 kcal
(6) G-S(sol) free energy of system = (1) + (5) 148.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds