Wall clock time and date at job start Wed Apr 1 2020 04:42:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 N 1.39899 * 125.74458 * 2 1
4 4 C 1.30292 * 109.23129 * 180.02562 * 3 2 1
5 5 C 1.41485 * 108.19103 * 0.02562 * 4 3 2
6 6 C 1.46766 * 126.51630 * 180.26337 * 5 4 3
7 7 O 1.21694 * 119.99708 * 179.68788 * 6 5 4
8 8 N 1.34779 * 120.00378 * 359.67887 * 6 5 4
9 9 C 1.46494 * 120.00118 * 180.02562 * 8 6 5
10 10 C 1.50701 * 109.47045 * 180.02562 * 9 8 6
11 11 C 1.40071 * 126.12441 * 259.68786 * 10 9 8
12 12 N 1.31016 * 108.25272 * 179.97438 * 11 10 9
13 13 N 1.39745 * 108.17787 * 0.52954 * 12 11 10
14 14 C 1.34650 * 126.12520 * 80.00023 * 10 9 8
15 15 C 1.51030 * 127.90672 * 359.44446 * 14 10 9
16 16 N 1.47498 * 106.99668 * 169.57092 * 15 14 10
17 17 C 1.36943 * 121.01583 * 222.97359 * 16 15 14
18 18 H 1.07998 * 120.00307 * 155.89153 * 17 16 15
19 19 C 1.38812 * 119.99342 * 335.89386 * 17 16 15
20 20 N 1.31615 * 120.00363 * 344.44640 * 19 17 16
21 21 Si 1.86805 * 119.99480 * 164.45005 * 19 17 16
22 22 H 1.48496 * 109.47516 * 90.00035 * 21 19 17
23 23 H 1.48506 * 109.46583 * 209.99971 * 21 19 17
24 24 H 1.48500 * 109.46962 * 329.99510 * 21 19 17
25 25 C 1.47086 * 117.97785 * 42.97182 * 16 15 14
26 26 C 1.46549 * 127.32444 * 179.23278 * 13 12 11
27 27 C 1.34849 * 125.75117 * 180.02562 * 2 1 3
28 28 N 1.38010 * 126.44272 * 359.97438 * 27 2 1
29 29 H 1.09003 * 109.46602 * 269.94764 * 1 2 3
30 30 H 1.08999 * 109.47480 * 29.95293 * 1 2 3
31 31 H 1.09002 * 109.46931 * 149.96023 * 1 2 3
32 32 H 1.07993 * 125.90097 * 179.97438 * 4 3 2
33 33 H 0.97000 * 119.99198 * 0.02562 * 8 6 5
34 34 H 1.09005 * 109.47284 * 299.99841 * 9 8 6
35 35 H 1.08996 * 109.47257 * 60.00553 * 9 8 6
36 36 H 1.07995 * 125.87474 * 0.09182 * 11 10 9
37 37 H 1.09006 * 109.95000 * 288.93745 * 15 14 10
38 38 H 1.09001 * 109.95318 * 50.19941 * 15 14 10
39 39 H 0.97001 * 119.99686 * 179.97438 * 20 19 17
40 40 H 1.09003 * 109.51330 * 176.52117 * 25 16 15
41 41 H 1.09003 * 109.50737 * 56.37438 * 25 16 15
42 42 H 1.09002 * 109.50915 * 281.39697 * 26 13 12
43 43 H 1.08996 * 109.51241 * 41.54107 * 26 13 12
44 44 H 0.97001 * 119.99630 * 179.97438 * 28 27 2
45 45 H 0.96995 * 120.00292 * 359.97438 * 28 27 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.2822 1.1355 0.0000
4 6 3.5314 0.7651 -0.0006
5 6 3.5728 -0.6491 -0.0015
6 6 4.7774 -1.4875 0.0030
7 8 4.6747 -2.7001 0.0073
8 7 5.9974 -0.9146 0.0023
9 6 7.1997 -1.7515 0.0063
10 6 8.4237 -0.8724 0.0051
11 6 9.2139 -0.5585 -1.1080
12 7 10.1839 0.2290 -0.7137
13 7 10.0492 0.4312 0.6625
14 6 8.9570 -0.2527 1.0750
15 6 8.4641 -0.2767 2.5024
16 7 9.5171 0.3377 3.3326
17 6 9.8773 -0.2101 4.5349
18 1 10.8589 -0.0192 4.9429
19 6 8.9807 -1.0107 5.2291
20 7 7.7046 -1.0022 4.9068
21 14 9.5854 -2.1002 6.6208
22 1 9.5224 -1.3493 7.9005
23 1 8.7262 -3.3080 6.7129
24 1 10.9879 -2.5095 6.3554
25 6 10.1686 1.5568 2.8298
26 6 10.9175 1.2291 1.5325
27 6 2.2529 -1.0944 -0.0005
28 7 1.8308 -2.4084 -0.0006
29 1 -0.3632 -0.0009 1.0277
30 1 -0.3634 0.8904 -0.5131
31 1 -0.3633 -0.8896 -0.5145
32 1 4.3872 1.4238 -0.0011
33 1 6.0791 0.0519 -0.0009
34 1 7.2035 -2.3778 0.8984
35 1 7.2053 -2.3837 -0.8816
36 1 9.0505 -0.9044 -2.1179
37 1 7.5415 0.2976 2.5870
38 1 8.2934 -1.3055 2.8197
39 1 7.0782 -1.5620 5.3917
40 1 10.8746 1.9257 3.5739
41 1 9.4139 2.3185 2.6339
42 1 11.8198 0.6632 1.7642
43 1 11.1879 2.1556 1.0261
44 1 2.4824 -3.1270 -0.0013
45 1 0.8828 -2.6133 0.0001
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001069858849.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:29
Heat of formation + Delta-G solvation = 124.308352 kcal
Electronic energy + Delta-G solvation = -30227.667661 eV
Core-core repulsion = 26090.275182 eV
Total energy + Delta-G solvation = -4137.392479 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-42.40484 -42.22553 -39.88240 -37.92800 -36.22602 -35.59402 -34.56219 -33.96597
-32.82150 -31.78408 -30.55739 -29.44772 -28.07351 -27.56573 -26.08065 -25.09003
-23.53091 -23.17254 -21.80272 -21.48235 -21.02481 -19.93549 -18.99271 -18.50918
-17.99284 -17.39251 -17.13346 -16.75724 -16.73411 -16.55376 -16.20870 -15.76532
-15.57206 -15.43318 -15.21799 -14.92999 -14.68251 -14.41832 -14.26226 -14.01933
-13.84804 -13.52668 -13.47735 -13.32135 -13.00816 -12.91432 -12.69490 -12.58076
-12.32600 -12.21880 -12.00388 -11.90303 -11.88688 -11.55444 -10.85255 -10.74578
-10.03864 -10.01768 -9.82171 -9.33767 -8.92013 -8.80462 -7.96181 -5.39825
0.87598 0.98115 1.28082 1.33438 1.46145 1.49546 1.56985 1.64722
1.75021 2.46711 2.64735 2.77611 2.82138 3.22954 3.46407 3.59763
3.65869 3.87997 4.07176 4.17492 4.23298 4.26344 4.29929 4.40313
4.41283 4.52206 4.53759 4.65416 4.68378 4.81159 4.87305 4.92385
5.00798 5.07158 5.30242 5.41405 5.42102 5.57011 5.60510 5.69376
5.81558 6.13938 6.22688 6.29358 6.54262 6.76781 6.85150 6.96088
7.01679 7.49015 7.68182 8.19463 9.12803
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.009937 B = 0.003353 C = 0.002855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2816.995893 B = 8348.002184 C = 9805.104325
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.091 3.909
2 N -0.401 5.401
3 N -0.328 5.328
4 C 0.114 3.886
5 C -0.395 4.395
6 C 0.599 3.401
7 O -0.603 6.603
8 N -0.710 5.710
9 C 0.221 3.779
10 C -0.273 4.273
11 C 0.067 3.933
12 N -0.327 5.327
13 N -0.367 5.367
14 C 0.095 3.905
15 C 0.251 3.749
16 N -0.616 5.616
17 C -0.268 4.268
18 H 0.079 0.921
19 C -0.042 4.042
20 N -0.930 5.930
21 Si 0.965 3.035
22 H -0.281 1.281
23 H -0.296 1.296
24 H -0.271 1.271
25 C 0.128 3.872
26 C 0.118 3.882
27 C 0.430 3.570
28 N -0.817 5.817
29 H 0.084 0.916
30 H 0.102 0.898
31 H 0.109 0.891
32 H 0.204 0.796
33 H 0.404 0.596
34 H 0.042 0.958
35 H 0.083 0.917
36 H 0.215 0.785
37 H 0.034 0.966
38 H 0.071 0.929
39 H 0.251 0.749
40 H 0.099 0.901
41 H 0.040 0.960
42 H 0.076 0.924
43 H 0.111 0.889
44 H 0.428 0.572
45 H 0.415 0.585
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.201 2.046 -12.538 16.937
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.049 4.049
2 N -0.190 5.190
3 N -0.147 5.147
4 C -0.076 4.076
5 C -0.415 4.415
6 C 0.391 3.609
7 O -0.487 6.487
8 N -0.359 5.359
9 C 0.097 3.903
10 C -0.285 4.285
11 C -0.119 4.119
12 N -0.147 5.147
13 N -0.149 5.149
14 C -0.036 4.036
15 C 0.124 3.876
16 N -0.339 5.339
17 C -0.398 4.398
18 H 0.097 0.903
19 C -0.238 4.238
20 N -0.575 5.575
21 Si 0.793 3.207
22 H -0.208 1.208
23 H -0.223 1.223
24 H -0.196 1.196
25 C 0.001 3.999
26 C -0.005 4.005
27 C 0.193 3.807
28 N -0.367 5.367
29 H 0.103 0.897
30 H 0.121 0.879
31 H 0.127 0.873
32 H 0.220 0.780
33 H 0.239 0.761
34 H 0.060 0.940
35 H 0.102 0.898
36 H 0.231 0.769
37 H 0.052 0.948
38 H 0.089 0.911
39 H 0.061 0.939
40 H 0.117 0.883
41 H 0.058 0.942
42 H 0.094 0.906
43 H 0.130 0.870
44 H 0.263 0.737
45 H 0.247 0.753
Dipole moment (debyes) X Y Z Total
from point charges -11.136 2.928 -12.701 17.144
hybrid contribution -0.060 -1.646 1.322 2.112
sum -11.196 1.282 -11.380 16.016
Atomic orbital electron populations
1.22202 0.71730 1.06272 1.04687 1.48446 1.07673 1.01427 1.61468
1.77040 1.02135 1.06551 1.28998 1.24056 0.95744 0.93383 0.94380
1.19365 0.91168 0.94178 1.36770 1.17191 0.82782 0.86491 0.74462
1.90620 1.87451 1.15440 1.55197 1.45717 1.04586 1.10526 1.75092
1.19107 0.79489 0.90478 1.01233 1.19559 1.04230 1.12088 0.92629
1.24239 0.91790 0.95594 1.00289 1.77157 1.24654 1.22708 0.90190
1.48668 1.21736 1.38801 1.05671 1.22192 0.89266 0.93950 0.98176
1.19325 0.89471 0.98719 0.80092 1.44442 1.43083 1.26715 1.19705
1.19483 0.97287 1.26594 0.96386 0.90327 1.25714 0.94923 1.02643
1.00537 1.70103 1.01746 1.41611 1.44036 0.85321 0.77669 0.78282
0.79438 1.20789 1.22262 1.19626 1.21453 0.96565 0.88489 0.93390
1.22533 0.92536 0.95318 0.90114 1.18147 0.89404 0.82985 0.90205
1.41732 1.12128 1.01577 1.81301 0.89735 0.87938 0.87280 0.77977
0.76120 0.93999 0.89841 0.76895 0.94808 0.91064 0.93936 0.88314
0.94162 0.90559 0.87047 0.73693 0.75300
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.99 11.25 127.77 1.44 2.43 16
2 N -0.40 -8.77 4.00 -365.31 -1.46 -10.23 16
3 N -0.33 -8.73 12.47 -56.23 -0.70 -9.43 16
4 C 0.11 3.02 11.49 85.72 0.99 4.01 16
5 C -0.40 -11.55 6.15 -19.99 -0.12 -11.68 16
6 C 0.60 19.96 7.79 86.47 0.67 20.63 16
7 O -0.60 -22.66 15.14 -4.33 -0.07 -22.72 16
8 N -0.71 -22.11 5.54 -470.73 -2.61 -24.71 16
9 C 0.22 7.34 5.95 85.63 0.51 7.85 16
10 C -0.27 -9.37 5.46 -20.24 -0.11 -9.48 16
11 C 0.07 2.05 11.97 85.26 1.02 3.07 16
12 N -0.33 -11.38 12.61 -56.80 -0.72 -12.09 16
13 N -0.37 -13.66 4.03 -333.93 -1.35 -15.01 16
14 C 0.10 3.81 6.71 41.30 0.28 4.09 16
15 C 0.25 11.81 5.11 85.55 0.44 12.25 16
16 N -0.62 -29.20 3.01 -701.00 -2.11 -31.31 16
17 C -0.27 -13.92 9.66 84.03 0.81 -13.11 16
18 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16
19 C -0.04 -2.25 5.00 84.86 0.42 -1.83 16
20 N -0.93 -53.06 11.07 21.65 0.24 -52.82 16
21 Si 0.96 43.77 29.58 68.60 2.03 45.79 16
22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16
23 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16
24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16
25 C 0.13 4.70 6.50 86.38 0.56 5.26 16
26 C 0.12 3.82 7.45 86.48 0.64 4.47 16
27 C 0.43 10.58 7.98 132.69 1.06 11.64 16
28 N -0.82 -15.15 9.02 -54.57 -0.49 -15.64 16
29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16
30 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16
31 H 0.11 0.52 7.46 -2.39 -0.02 0.50 16
32 H 0.20 4.30 7.50 -2.91 -0.02 4.28 16
33 H 0.40 11.40 7.41 -92.71 -0.69 10.71 16
34 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16
35 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16
36 H 0.21 4.64 8.06 -2.91 -0.02 4.62 16
37 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16
38 H 0.07 3.87 6.46 -2.39 -0.02 3.85 16
39 H 0.25 14.16 8.31 -92.71 -0.77 13.38 16
40 H 0.10 3.28 7.94 -2.39 -0.02 3.26 16
41 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16
42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16
43 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16
44 H 0.43 9.41 7.01 -92.71 -0.65 8.76 16
45 H 0.42 4.25 8.04 -92.71 -0.75 3.51 16
Total: -1.00 -73.88 377.48 0.37 -73.51
By element:
Atomic # 1 Polarization: 36.07 SS G_CDS: -1.01 Total: 35.06 kcal
Atomic # 6 Polarization: 30.98 SS G_CDS: 8.61 Total: 39.59 kcal
Atomic # 7 Polarization: -162.04 SS G_CDS: -9.19 Total: -171.24 kcal
Atomic # 8 Polarization: -22.66 SS G_CDS: -0.07 Total: -22.72 kcal
Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal
Total: -73.88 0.37 -73.51 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001069858849.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 197.818 kcal
(2) G-P(sol) polarization free energy of solvation -73.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.510 kcal
(6) G-S(sol) free energy of system = (1) + (5) 124.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds