Wall clock time and date at job start Wed Apr 1 2020 03:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47029 * 2 1 4 4 N 1.28522 * 124.44781 * 90.02933 * 3 2 1 5 5 C 1.31130 * 109.05873 * 179.97438 * 4 3 2 6 6 C 1.40922 * 105.77661 * 0.25803 * 5 4 3 7 7 C 1.47802 * 127.23666 * 179.71165 * 6 5 4 8 8 O 1.21562 * 120.00181 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00236 * 179.97438 * 7 6 5 10 10 C 1.46499 * 120.00123 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47062 * 179.97438 * 10 9 7 12 12 C 1.40079 * 126.12104 * 259.68616 * 11 10 9 13 13 N 1.31014 * 108.25091 * 179.97438 * 12 11 10 14 14 N 1.39744 * 108.17789 * 0.52499 * 13 12 11 15 15 C 1.34640 * 126.12788 * 79.99703 * 11 10 9 16 16 C 1.51038 * 127.90789 * 359.44653 * 15 11 10 17 17 N 1.47506 * 106.99613 * 169.56873 * 16 15 11 18 18 C 1.36934 * 121.00823 * 222.97043 * 17 16 15 19 19 H 1.08001 * 119.99475 * 155.89792 * 18 17 16 20 20 C 1.38810 * 120.00444 * 335.89825 * 18 17 16 21 21 N 1.31626 * 119.99587 * 344.44670 * 20 18 17 22 22 Si 1.86790 * 120.00092 * 164.45197 * 20 18 17 23 23 H 1.48501 * 109.47599 * 89.99858 * 22 20 18 24 24 H 1.48503 * 109.47022 * 210.00115 * 22 20 18 25 25 H 1.48499 * 109.47061 * 329.99395 * 22 20 18 26 26 C 1.47084 * 117.97476 * 42.97609 * 17 16 15 27 27 C 1.46556 * 127.32651 * 179.23738 * 14 13 12 28 28 N 1.28593 * 124.43971 * 269.99311 * 3 2 1 29 29 H 1.08999 * 109.47093 * 59.99789 * 1 2 3 30 30 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47056 * 300.00276 * 1 2 3 32 32 H 1.08997 * 109.47056 * 239.99724 * 2 1 3 33 33 H 1.09002 * 109.47289 * 119.99737 * 2 1 3 34 34 H 1.08000 * 127.11090 * 179.97438 * 5 4 3 35 35 H 0.97006 * 119.99725 * 359.97438 * 9 7 6 36 36 H 1.09002 * 109.47094 * 299.99231 * 10 9 7 37 37 H 1.09000 * 109.47669 * 59.99651 * 10 9 7 38 38 H 1.07994 * 125.87532 * 0.08773 * 12 11 10 39 39 H 1.09000 * 109.94748 * 288.93648 * 16 15 11 40 40 H 1.08995 * 109.94625 * 50.19709 * 16 15 11 41 41 H 0.97000 * 119.99361 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.51070 * 176.52076 * 26 17 16 43 43 H 1.08997 * 109.51671 * 56.36490 * 26 17 16 44 44 H 1.08997 * 109.50387 * 281.40308 * 27 14 13 45 45 H 1.08996 * 109.50461 * 41.53249 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0664 1.0598 5 6 2.6829 3.2583 0.7119 6 6 2.6800 3.2695 -0.6973 7 6 3.0665 4.3873 -1.5837 8 8 3.4370 5.4418 -1.1058 9 7 3.0082 4.2375 -2.9218 10 6 3.3919 5.3453 -3.8003 11 6 3.2382 4.9222 -5.2385 12 6 4.2685 4.5057 -6.0913 13 7 3.7453 4.2207 -7.2582 14 7 2.3699 4.4579 -7.1889 15 6 2.0870 4.8825 -5.9357 16 6 0.6986 5.2327 -5.4551 17 7 -0.1722 5.2724 -6.6450 18 6 -1.0956 6.2700 -6.8104 19 1 -1.4413 6.5269 -7.8008 20 6 -1.5872 6.9511 -5.7053 21 7 -1.4154 6.4566 -4.4976 22 14 -2.4926 8.5690 -5.9320 23 1 -3.9438 8.3045 -6.1037 24 1 -2.2835 9.4250 -4.7367 25 1 -1.9704 9.2640 -7.1359 26 6 -0.0187 4.2079 -7.6482 27 6 1.3843 4.2917 -8.2608 28 7 2.2608 2.0668 -1.0605 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.9686 4.0661 1.3693 35 1 2.7129 3.3958 -3.3032 36 1 2.7502 6.2041 -3.6034 37 1 4.4304 5.6165 -3.6107 38 1 5.3139 4.4304 -5.8312 39 1 0.3432 4.4727 -4.7594 40 1 0.7085 6.2081 -4.9688 41 1 -1.7587 6.9327 -3.7253 42 1 -0.7656 4.3355 -8.4317 43 1 -0.1520 3.2366 -7.1718 44 1 1.4370 5.1434 -8.9389 45 1 1.5957 3.3745 -8.8104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069859954.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:06 Heat of formation + Delta-G solvation = 157.446624 kcal Electronic energy + Delta-G solvation = -30167.610217 eV Core-core repulsion = 26031.654721 eV Total energy + Delta-G solvation = -4135.955496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.69211 -42.42717 -40.42658 -37.97123 -36.19465 -35.80077 -34.66700 -33.79012 -32.85423 -31.83720 -31.46495 -30.23147 -27.90534 -26.85516 -25.65068 -25.14716 -24.42800 -23.29441 -22.52776 -21.59566 -21.44279 -20.02804 -18.97117 -18.54445 -18.18895 -17.68798 -17.49109 -17.00642 -16.67636 -16.37487 -16.06975 -15.95029 -15.49279 -15.40240 -15.11041 -15.00216 -14.81939 -14.71412 -14.13153 -13.95167 -13.67479 -13.35587 -13.14474 -13.07605 -12.97918 -12.96715 -12.71581 -12.62696 -12.36383 -12.35038 -12.06291 -12.03859 -11.92094 -11.65559 -11.50942 -11.38760 -10.77805 -10.52492 -10.06701 -10.05315 -9.40817 -8.95792 -7.98991 -5.42915 0.23075 0.89626 0.92206 1.21456 1.45121 1.48827 1.55735 1.59103 1.65281 2.18945 2.39686 2.45129 2.92678 3.20283 3.42601 3.60405 3.76135 3.83221 3.91186 3.95156 4.04926 4.16203 4.19879 4.24229 4.25260 4.37346 4.47351 4.59330 4.67436 4.73810 4.75122 4.78562 4.87167 4.92616 4.98890 5.01730 5.15173 5.23524 5.36020 5.36773 5.57565 5.57959 5.76045 6.08935 6.19700 6.44184 6.80488 6.98403 7.02211 7.12972 7.65034 8.16325 9.10228 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008952 B = 0.003423 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3127.088237 B = 8178.178359 C = 9206.391864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 N -0.133 5.133 4 N -0.296 5.296 5 C 0.029 3.971 6 C -0.065 4.065 7 C 0.608 3.392 8 O -0.561 6.561 9 N -0.696 5.696 10 C 0.215 3.785 11 C -0.276 4.276 12 C 0.069 3.931 13 N -0.326 5.326 14 N -0.367 5.367 15 C 0.097 3.903 16 C 0.250 3.750 17 N -0.616 5.616 18 C -0.269 4.269 19 H 0.080 0.920 20 C -0.042 4.042 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.281 1.281 24 H -0.296 1.296 25 H -0.271 1.271 26 C 0.128 3.872 27 C 0.117 3.883 28 N -0.255 5.255 29 H 0.047 0.953 30 H 0.119 0.881 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.138 0.862 34 H 0.224 0.776 35 H 0.409 0.591 36 H 0.052 0.948 37 H 0.095 0.905 38 H 0.217 0.783 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.252 0.748 42 H 0.100 0.900 43 H 0.038 0.962 44 H 0.078 0.922 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 -14.028 5.337 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.003 3.997 3 N -0.039 5.039 4 N -0.135 5.135 5 C -0.154 4.154 6 C -0.227 4.227 7 C 0.392 3.608 8 O -0.439 6.439 9 N -0.346 5.346 10 C 0.091 3.909 11 C -0.289 4.289 12 C -0.118 4.118 13 N -0.146 5.146 14 N -0.148 5.148 15 C -0.035 4.035 16 C 0.123 3.877 17 N -0.339 5.339 18 C -0.398 4.398 19 H 0.098 0.902 20 C -0.238 4.238 21 N -0.577 5.577 22 Si 0.794 3.206 23 H -0.208 1.208 24 H -0.222 1.222 25 H -0.195 1.195 26 C 0.001 3.999 27 C -0.005 4.005 28 N -0.104 5.104 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.156 0.844 34 H 0.241 0.759 35 H 0.244 0.756 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.233 0.767 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.118 0.882 43 H 0.056 0.944 44 H 0.096 0.904 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.793 -14.915 4.414 17.398 hybrid contribution -0.808 1.809 0.708 2.103 sum 6.986 -13.106 5.123 15.710 Atomic orbital electron populations 1.22186 0.92538 1.05545 1.02346 1.22630 0.96515 0.72251 1.08293 1.48827 1.42132 1.14407 0.98496 1.73975 1.17940 1.05707 1.15926 1.25158 1.01062 0.95764 0.93383 1.22970 1.10699 0.93649 0.95333 1.16788 0.77279 0.84948 0.81817 1.90775 1.49372 1.27809 1.75919 1.45975 1.66117 1.17773 1.04728 1.19315 1.01005 0.87600 0.82945 1.19527 0.92093 1.19456 0.97786 1.24269 1.00843 0.97150 0.89490 1.77161 0.88334 1.25817 1.23293 1.48685 1.05845 1.50614 1.09684 1.22203 0.98639 0.96092 0.86530 1.19328 0.80259 0.99854 0.88242 1.44437 1.40365 1.27444 1.21649 1.19499 1.17159 1.10219 0.92928 0.90218 1.25722 1.00001 1.02668 0.95380 1.70106 1.50317 1.39060 0.98207 0.85305 0.78458 0.79889 0.76974 1.20777 1.22229 1.19548 1.21448 0.93713 0.91276 0.93444 1.22547 0.86760 1.03583 0.87642 1.74349 1.14843 1.04597 1.16635 0.93353 0.86299 0.92392 0.85253 0.84439 0.75924 0.75603 0.93007 0.88718 0.76682 0.95161 0.90851 0.93891 0.88195 0.94352 0.90386 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 71.98 0.74 -1.37 16 2 C 0.12 1.50 7.24 86.38 0.63 2.12 16 3 N -0.13 -3.04 3.94 -187.50 -0.74 -3.78 16 4 N -0.30 -7.27 12.01 -56.17 -0.67 -7.94 16 5 C 0.03 0.76 12.04 85.46 1.03 1.79 16 6 C -0.07 -1.95 7.21 42.24 0.30 -1.64 16 7 C 0.61 20.35 7.83 86.77 0.68 21.03 16 8 O -0.56 -21.42 16.95 -3.91 -0.07 -21.49 16 9 N -0.70 -22.08 5.55 -469.74 -2.60 -24.68 16 10 C 0.21 6.97 5.95 85.63 0.51 7.48 16 11 C -0.28 -9.41 5.46 -20.24 -0.11 -9.52 16 12 C 0.07 2.07 11.97 85.26 1.02 3.09 16 13 N -0.33 -11.25 12.61 -56.79 -0.72 -11.96 16 14 N -0.37 -13.58 4.03 -333.93 -1.35 -14.93 16 15 C 0.10 3.85 6.71 41.30 0.28 4.13 16 16 C 0.25 11.77 5.11 85.55 0.44 12.21 16 17 N -0.62 -29.05 3.01 -701.02 -2.11 -31.17 16 18 C -0.27 -13.87 9.66 84.03 0.81 -13.06 16 19 H 0.08 3.91 7.88 -2.91 -0.02 3.89 16 20 C -0.04 -2.22 5.00 84.86 0.42 -1.80 16 21 N -0.93 -52.97 11.07 21.65 0.24 -52.73 16 22 Si 0.97 43.53 29.58 68.60 2.03 45.55 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.13 4.68 6.50 86.38 0.56 5.24 16 27 C 0.12 3.78 7.45 86.48 0.64 4.42 16 28 N -0.25 -7.02 11.84 -48.17 -0.57 -7.59 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.22 4.72 8.06 -2.91 -0.02 4.70 16 35 H 0.41 12.53 8.23 -92.70 -0.76 11.77 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.22 4.54 8.06 -2.91 -0.02 4.52 16 39 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.07 3.96 6.46 -2.39 -0.02 3.94 16 41 H 0.25 14.13 8.31 -92.71 -0.77 13.35 16 42 H 0.10 3.28 7.94 -2.39 -0.02 3.27 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -71.18 384.78 1.66 -69.52 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 0.27 Total: 27.07 kcal Atomic # 6 Polarization: 26.17 SS G_CDS: 7.95 Total: 34.12 kcal Atomic # 7 Polarization: -146.25 SS G_CDS: -8.52 Total: -154.78 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.07 Total: -21.49 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -71.18 1.66 -69.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069859954.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.965 kcal (2) G-P(sol) polarization free energy of solvation -71.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds