Wall clock time and date at job start Wed Apr 1 2020 03:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.46880 * 2 1 4 4 C 1.50700 * 109.47194 * 239.99757 * 2 1 3 5 5 O 1.21277 * 120.00023 * 239.99737 * 4 2 1 6 6 N 1.34774 * 120.00039 * 60.00170 * 4 2 1 7 7 C 1.46497 * 120.00028 * 179.97438 * 6 4 2 8 8 H 1.08999 * 110.88530 * 31.12135 * 7 6 4 9 9 C 1.55126 * 111.19566 * 267.18835 * 7 6 4 10 10 N 1.47434 * 104.72085 * 279.19394 * 9 7 6 11 11 C 1.36931 * 125.64656 * 155.81833 * 10 9 7 12 12 H 1.08004 * 120.00068 * 193.30553 * 11 10 9 13 13 C 1.38810 * 120.00094 * 13.30664 * 11 10 9 14 14 N 1.31615 * 120.00084 * 27.28196 * 13 11 10 15 15 Si 1.86800 * 120.00139 * 207.28071 * 13 11 10 16 16 H 1.48504 * 109.46893 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47202 * 119.99674 * 15 13 11 18 18 H 1.48499 * 109.47289 * 240.00404 * 15 13 11 19 19 C 1.47021 * 108.70111 * 335.54846 * 10 9 7 20 20 C 1.54327 * 107.27127 * 1.29239 * 19 10 9 21 21 H 1.08997 * 110.71594 * 263.64600 * 20 19 10 22 22 N 1.46503 * 110.71884 * 140.55685 * 20 19 10 23 23 C 1.35315 * 125.86552 * 326.44525 * 22 20 19 24 24 C 1.35350 * 106.17281 * 180.02562 * 23 22 20 25 25 N 1.33773 * 106.49889 * 0.02562 * 24 23 22 26 26 N 1.28639 * 108.88466 * 359.73211 * 25 24 23 27 27 N 1.46504 * 109.46971 * 119.99799 * 2 1 3 28 28 C 1.34944 * 126.03927 * 34.71706 * 27 2 1 29 29 C 1.35309 * 107.74789 * 179.83998 * 28 27 2 30 30 C 1.39873 * 107.92118 * 0.42337 * 29 28 27 31 31 N 1.30843 * 108.19955 * 359.73801 * 30 29 28 32 32 H 1.09005 * 109.46880 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46915 * 300.00207 * 1 2 3 34 34 H 1.09000 * 109.47136 * 60.00174 * 1 2 3 35 35 H 0.97005 * 119.99552 * 359.97438 * 6 4 2 36 36 H 1.08997 * 110.50082 * 160.34983 * 9 7 6 37 37 H 1.08999 * 110.34237 * 37.94940 * 9 7 6 38 38 H 0.96995 * 120.00585 * 5.85105 * 14 13 11 39 39 H 1.08998 * 109.87752 * 120.70615 * 19 10 9 40 40 H 1.09001 * 109.88483 * 241.72019 * 19 10 9 41 41 H 1.07998 * 126.91687 * 359.97438 * 23 22 20 42 42 H 1.08000 * 126.75092 * 180.02562 * 24 23 22 43 43 H 1.08004 * 126.12665 * 0.02562 * 28 27 2 44 44 H 1.08008 * 126.04073 * 180.16039 * 29 28 27 45 45 H 1.07998 * 125.89713 * 179.76023 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1956 -0.9404 -3.6506 8 1 2.3068 -2.0086 -3.4646 9 6 3.5285 -0.3229 -4.1493 10 7 3.1254 0.8738 -4.9103 11 6 3.9081 1.9732 -5.1420 12 1 3.4640 2.8823 -5.5201 13 6 5.2722 1.9195 -4.8910 14 7 5.9088 0.7695 -4.9576 15 14 6.2045 3.4794 -4.4585 16 1 5.2662 4.6305 -4.4498 17 1 6.8201 3.3319 -3.1152 18 1 7.2682 3.7162 -5.4673 19 6 1.7463 0.6883 -5.3848 20 6 1.2624 -0.6810 -4.8627 21 1 1.3908 -1.4510 -5.6235 22 7 -0.1364 -0.6073 -4.4336 23 6 -0.7376 0.4667 -3.8714 24 6 -2.0190 0.1006 -3.6349 25 7 -2.1373 -1.1630 -4.0578 26 7 -1.0057 -1.5516 -4.5304 27 7 2.0183 -0.6906 1.1962 28 6 1.4373 -1.7525 1.7927 29 6 2.1966 -2.0927 2.8598 30 6 3.2735 -1.2023 2.9232 31 7 3.1676 -0.3614 1.9264 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.1489 0.5385 -2.5435 36 1 4.0557 -1.0241 -4.7961 37 1 4.1554 -0.0409 -3.3033 38 1 5.4444 -0.0249 -5.2642 39 1 1.1095 1.4808 -4.9920 40 1 1.7242 0.7010 -6.4745 41 1 -0.2858 1.4233 -3.6543 42 1 -2.7936 0.7089 -3.1918 43 1 0.5305 -2.2448 1.4736 44 1 2.0028 -2.9053 3.5444 45 1 4.0571 -1.2083 3.6663 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069898237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:38 Heat of formation + Delta-G solvation = 167.746301 kcal Electronic energy + Delta-G solvation = -31496.864145 eV Core-core repulsion = 27361.355277 eV Total energy + Delta-G solvation = -4135.508868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.34497 -42.35197 -41.19482 -39.56895 -36.14881 -35.77426 -34.89324 -33.56001 -32.09241 -31.19556 -30.85081 -30.10265 -29.34049 -26.72774 -25.95930 -24.20858 -23.61056 -23.16409 -22.05142 -21.94294 -21.72254 -21.04443 -19.86265 -19.03007 -18.68485 -18.17164 -17.37779 -16.98888 -16.58327 -16.30768 -16.09874 -15.77753 -15.62565 -15.55021 -15.42742 -14.92678 -14.83216 -14.69353 -14.49677 -13.90520 -13.80455 -13.54774 -13.45470 -13.38330 -13.06508 -12.83822 -12.78033 -12.70729 -12.61799 -12.52262 -11.95954 -11.88790 -11.70836 -11.67125 -11.38238 -11.16897 -10.68287 -10.49024 -10.44260 -10.30018 -9.56930 -9.15644 -8.37399 -5.41049 0.56759 0.80284 1.12247 1.24801 1.36183 1.57048 1.63577 1.64155 1.77634 1.94436 1.97391 2.57028 3.00170 3.06950 3.13947 3.23842 3.35736 3.49261 3.59994 3.69427 3.71878 3.90203 3.91483 4.08986 4.13356 4.23019 4.28639 4.44692 4.47971 4.53381 4.59179 4.66729 4.73540 4.76688 4.82501 4.86191 4.97679 5.10361 5.11797 5.29381 5.53409 5.59132 5.69358 5.97152 6.18338 6.22760 6.72922 6.74214 6.87124 7.50866 7.58377 8.09726 8.96279 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.007589 B = 0.005086 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3688.881595 B = 5504.125089 C = 8281.316135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.146 3.854 3 H 0.134 0.866 4 C 0.502 3.498 5 O -0.568 6.568 6 N -0.692 5.692 7 C 0.138 3.862 8 H 0.100 0.900 9 C 0.148 3.852 10 N -0.609 5.609 11 C -0.337 4.337 12 H 0.079 0.921 13 C -0.074 4.074 14 N -0.952 5.952 15 Si 1.112 2.888 16 H -0.261 1.261 17 H -0.300 1.300 18 H -0.294 1.294 19 C 0.131 3.869 20 C 0.140 3.860 21 H 0.141 0.859 22 N -0.272 5.272 23 C -0.052 4.052 24 C -0.040 4.040 25 N -0.300 5.300 26 N -0.117 5.117 27 N -0.365 5.365 28 C 0.060 3.940 29 C -0.280 4.280 30 C 0.040 3.960 31 N -0.342 5.342 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.411 0.589 36 H 0.023 0.977 37 H 0.025 0.975 38 H 0.257 0.743 39 H 0.068 0.932 40 H 0.047 0.953 41 H 0.216 0.784 42 H 0.228 0.772 43 H 0.194 0.806 44 H 0.173 0.827 45 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.289 0.945 10.678 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.039 3.961 3 H 0.152 0.848 4 C 0.288 3.712 5 O -0.446 6.446 6 N -0.346 5.346 7 C 0.030 3.970 8 H 0.118 0.882 9 C 0.021 3.979 10 N -0.337 5.337 11 C -0.465 4.465 12 H 0.097 0.903 13 C -0.270 4.270 14 N -0.595 5.595 15 Si 0.938 3.062 16 H -0.185 1.185 17 H -0.227 1.227 18 H -0.222 1.222 19 C 0.005 3.995 20 C 0.036 3.964 21 H 0.159 0.841 22 N -0.065 5.065 23 C -0.203 4.203 24 C -0.198 4.198 25 N -0.165 5.165 26 N -0.095 5.095 27 N -0.147 5.147 28 C -0.085 4.085 29 C -0.309 4.309 30 C -0.146 4.146 31 N -0.162 5.162 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.250 0.750 36 H 0.040 0.960 37 H 0.044 0.956 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.232 0.768 42 H 0.245 0.755 43 H 0.211 0.789 44 H 0.191 0.809 45 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -15.108 0.547 9.995 18.124 hybrid contribution -0.778 -0.290 -0.331 0.893 sum -15.886 0.257 9.665 18.597 Atomic orbital electron populations 1.22188 0.86815 1.04910 1.06705 1.21262 0.98602 0.97122 0.79076 0.84800 1.21387 0.79737 0.84514 0.85598 1.90747 1.38555 1.28292 1.86981 1.45543 1.53078 1.31955 1.03978 1.22291 0.93095 0.97676 0.83930 0.88223 1.21778 0.93367 0.88818 0.93959 1.44593 1.11426 1.17511 1.60189 1.20028 0.91124 0.89888 1.45436 0.90297 1.26954 0.94802 1.05181 1.00067 1.70870 1.38605 1.01770 1.48240 0.82906 0.74929 0.72462 0.75943 1.18468 1.22685 1.22158 1.21727 0.87231 0.92296 0.98219 1.22894 0.74240 1.02210 0.97086 0.84130 1.47272 1.10165 1.09998 1.39057 1.24167 0.95272 0.96184 1.04664 1.24225 0.97105 0.93176 1.05270 1.75097 1.14468 1.13418 1.13545 1.78373 0.94436 1.15538 1.21182 1.48338 1.19404 1.25496 1.21487 1.22959 1.00613 0.90282 0.94684 1.21856 0.98589 1.06571 1.03893 1.24438 0.99879 0.93536 0.96782 1.77350 1.03578 1.26563 1.08751 0.91014 0.87846 0.87384 0.75011 0.95972 0.95649 0.93155 0.91444 0.93529 0.76758 0.75548 0.78898 0.80918 0.77670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.73 71.98 0.63 -1.31 16 2 C 0.15 3.43 3.73 44.25 0.17 3.60 16 3 H 0.13 3.00 8.14 -2.38 -0.02 2.98 16 4 C 0.50 15.78 7.22 87.66 0.63 16.41 16 5 O -0.57 -23.68 16.06 -3.02 -0.05 -23.73 16 6 N -0.69 -19.31 4.56 -435.62 -1.99 -21.29 16 7 C 0.14 4.51 3.29 46.46 0.15 4.66 16 8 H 0.10 3.49 7.54 -2.39 -0.02 3.47 16 9 C 0.15 6.42 4.93 86.93 0.43 6.85 16 10 N -0.61 -26.07 3.33 -691.54 -2.30 -28.37 16 11 C -0.34 -16.81 10.05 84.03 0.84 -15.96 16 12 H 0.08 3.79 7.96 -2.91 -0.02 3.76 16 13 C -0.07 -3.98 5.09 84.86 0.43 -3.54 16 14 N -0.95 -56.75 12.82 21.65 0.28 -56.47 16 15 Si 1.11 49.04 30.00 68.60 2.06 51.09 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 17 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 18 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 19 C 0.13 4.08 6.85 86.73 0.59 4.67 16 20 C 0.14 3.81 3.85 46.18 0.18 3.99 16 21 H 0.14 3.69 8.14 -2.39 -0.02 3.67 16 22 N -0.27 -6.49 3.14 -321.53 -1.01 -7.49 16 23 C -0.05 -0.89 8.48 83.49 0.71 -0.19 16 24 C -0.04 -0.67 12.05 83.73 1.01 0.34 16 25 N -0.30 -7.73 12.41 -58.26 -0.72 -8.45 16 26 N -0.12 -3.30 13.17 37.02 0.49 -2.81 16 27 N -0.36 -10.16 3.02 -331.05 -1.00 -11.16 16 28 C 0.06 1.39 10.58 83.54 0.88 2.27 16 29 C -0.28 -6.25 10.80 21.99 0.24 -6.01 16 30 C 0.04 1.02 12.03 85.24 1.03 2.04 16 31 N -0.34 -11.06 12.58 -57.02 -0.72 -11.78 16 32 H 0.07 0.99 7.15 -2.38 -0.02 0.97 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.11 0.95 7.56 -2.39 -0.02 0.93 16 35 H 0.41 8.93 5.49 -92.70 -0.51 8.42 16 36 H 0.02 1.07 6.84 -2.39 -0.02 1.05 16 37 H 0.03 1.33 7.73 -2.39 -0.02 1.31 16 38 H 0.26 15.43 5.83 -92.71 -0.54 14.89 16 39 H 0.07 1.77 6.02 -2.39 -0.01 1.76 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.22 2.39 6.48 -2.91 -0.02 2.37 16 42 H 0.23 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.19 3.22 7.25 -2.91 -0.02 3.20 16 44 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.21 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -81.47 372.70 3.71 -77.75 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.76 Total: 24.89 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 7.92 Total: 17.83 kcal Atomic # 7 Polarization: -140.86 SS G_CDS: -6.97 Total: -147.83 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.06 Total: 51.09 kcal Total: -81.47 3.71 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069898237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.498 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds