Wall clock time and date at job start Wed Apr 1 2020 03:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.35400 * 126.44011 * 264.69403 * 3 2 1 5 5 C 1.35565 * 107.16365 * 179.84256 * 4 3 2 6 6 N 1.33103 * 108.34410 * 0.41929 * 5 4 3 7 7 C 1.31611 * 109.09627 * 359.73457 * 6 5 4 8 8 C 1.47407 * 125.86109 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99888 * 180.02562 * 8 7 6 10 10 N 1.34779 * 120.00117 * 0.02644 * 8 7 6 11 11 C 1.46503 * 119.99978 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.64129 * 36.68991 * 11 10 8 13 13 C 1.54322 * 110.71694 * 273.54500 * 11 10 8 14 14 N 1.47029 * 107.26912 * 219.44216 * 13 11 10 15 15 C 1.36936 * 125.64418 * 178.97633 * 14 13 11 16 16 H 1.08006 * 119.99742 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00553 * 359.97438 * 15 14 13 18 18 N 1.31616 * 119.99594 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00004 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47339 * 59.99919 * 19 17 15 21 21 H 1.48503 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47481 * 299.99394 * 19 17 15 23 23 C 1.47428 * 108.70345 * 358.94341 * 14 13 11 24 24 C 1.54913 * 104.83039 * 24.12587 * 23 14 13 25 25 H 1.08995 * 111.00277 * 204.91192 * 24 23 14 26 26 N 1.46500 * 111.00234 * 81.06549 * 24 23 14 27 27 C 1.35314 * 125.87041 * 332.80354 * 26 24 23 28 28 C 1.35349 * 106.17781 * 180.02562 * 27 26 24 29 29 N 1.33775 * 106.49461 * 359.97438 * 28 27 26 30 30 N 1.28640 * 108.88720 * 359.73628 * 29 28 27 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 33 33 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 34 34 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 35 35 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 36 36 H 1.08008 * 126.41951 * 359.95543 * 4 3 2 37 37 H 1.08001 * 125.82854 * 180.14943 * 5 4 3 38 38 H 0.97000 * 119.99948 * 359.97438 * 10 8 7 39 39 H 1.08996 * 109.88611 * 338.85918 * 13 11 10 40 40 H 1.09003 * 109.88439 * 100.03211 * 13 11 10 41 41 H 0.97007 * 119.99877 * 180.02562 * 18 17 15 42 42 H 1.08997 * 110.36411 * 142.96687 * 23 14 13 43 43 H 1.08995 * 110.36621 * 265.17800 * 23 14 13 44 44 H 1.08005 * 126.90996 * 0.02562 * 27 26 24 45 45 H 1.07994 * 126.75317 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3814 2.1059 -1.0846 5 6 2.7656 3.3274 -0.6393 6 7 2.6490 3.3456 0.6865 7 6 2.1985 2.1785 1.0952 8 6 1.9343 1.7967 2.4943 9 8 1.5173 0.6839 2.7524 10 7 2.1547 2.6809 3.4873 11 6 1.8926 2.3012 4.8778 12 1 2.1575 1.2576 5.0476 13 6 0.4154 2.5563 5.2442 14 7 0.3911 3.0861 6.6155 15 6 -0.7303 3.4601 7.3067 16 1 -0.6423 3.8388 8.3143 17 6 -1.9802 3.3526 6.7123 18 7 -2.0873 2.8917 5.4842 19 14 -3.5098 3.8622 7.6556 20 1 -3.4096 5.2975 8.0231 21 1 -4.7088 3.6521 6.8049 22 1 -3.6273 3.0426 8.8883 23 6 1.7738 3.1472 7.1233 24 6 2.6587 3.2318 5.8547 25 1 3.6611 2.8516 6.0515 26 7 2.7110 4.6030 5.3414 27 6 1.7546 5.5467 5.5021 28 6 2.2094 6.6554 4.8728 29 7 3.4062 6.3400 4.3652 30 7 3.6772 5.1188 4.6653 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 2.3659 1.7738 -2.1122 37 1 3.1117 4.1445 -1.2548 38 1 2.4876 3.5684 3.2814 39 1 -0.0164 3.2845 4.5577 40 1 -0.1447 1.6223 5.1977 41 1 -2.9607 2.8169 5.0687 42 1 1.9118 4.0339 7.7420 43 1 2.0089 2.2480 7.6926 44 1 0.8170 5.4373 6.0269 45 1 1.7052 7.6073 4.7957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069918430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:28 Heat of formation + Delta-G solvation = 174.331763 kcal Electronic energy + Delta-G solvation = -31564.293765 eV Core-core repulsion = 27429.070463 eV Total energy + Delta-G solvation = -4135.223301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.83288 -42.26098 -39.40452 -37.73880 -35.22590 -34.10424 -33.34644 -31.73435 -30.54520 -30.38664 -29.83158 -28.67465 -27.54136 -25.02513 -24.17370 -23.16965 -22.38092 -22.08335 -21.43442 -20.49473 -20.00948 -19.71442 -18.01672 -17.40725 -17.00961 -16.37418 -15.79134 -15.70371 -15.34545 -14.86781 -14.61469 -14.39607 -14.27953 -14.07612 -13.87574 -13.78649 -13.54565 -13.43803 -13.01928 -12.70674 -12.47893 -12.32855 -12.13867 -11.80097 -11.45513 -11.33642 -11.25360 -11.08139 -10.83310 -10.64911 -10.44628 -10.25215 -10.18308 -10.03612 -9.95606 -9.81027 -9.67364 -8.88720 -8.83989 -8.77970 -8.49352 -7.14286 -5.90981 -3.30369 1.43041 2.11052 2.40663 2.66500 2.74778 3.06929 3.30075 3.34745 3.37057 3.39760 3.56614 4.29579 4.39822 4.53592 4.57006 4.72375 4.78803 4.89755 5.02678 5.13715 5.15097 5.23772 5.32445 5.38381 5.45327 5.54942 5.64261 5.65308 5.73836 5.84218 5.87617 6.05816 6.08898 6.17759 6.19445 6.24460 6.50039 6.59515 6.65376 6.89621 7.14037 7.26282 7.32484 7.56816 7.61642 7.91637 7.97949 8.31302 8.95848 8.98723 9.56234 10.15627 11.18827 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009869 B = 0.004411 C = 0.003504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2836.463296 B = 6346.122513 C = 7989.271562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.096 3.904 3 N -0.413 5.413 4 C -0.035 4.035 5 C -0.028 4.028 6 N -0.442 5.442 7 C 0.145 3.855 8 C 0.610 3.390 9 O -0.535 6.535 10 N -0.691 5.691 11 C 0.111 3.889 12 H 0.113 0.887 13 C 0.169 3.831 14 N -0.601 5.601 15 C -0.246 4.246 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.912 5.912 19 Si 0.915 3.085 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.128 3.872 24 C 0.115 3.885 25 H 0.120 0.880 26 N -0.280 5.280 27 C -0.006 4.006 28 C -0.075 4.075 29 N -0.272 5.272 30 N -0.106 5.106 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.181 0.819 37 H 0.176 0.824 38 H 0.411 0.589 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.257 0.743 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.203 0.797 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.018 -3.332 -9.237 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.094 5.094 4 C -0.173 4.173 5 C -0.182 4.182 6 N -0.163 5.163 7 C -0.114 4.114 8 C 0.394 3.606 9 O -0.412 6.412 10 N -0.343 5.343 11 C 0.004 3.996 12 H 0.130 0.870 13 C 0.043 3.957 14 N -0.329 5.329 15 C -0.373 4.373 16 H 0.101 0.899 17 C -0.195 4.195 18 N -0.558 5.558 19 Si 0.744 3.256 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.001 3.999 24 C 0.011 3.989 25 H 0.138 0.862 26 N -0.073 5.073 27 C -0.158 4.158 28 C -0.231 4.231 29 N -0.139 5.139 30 N -0.085 5.085 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.198 0.802 37 H 0.193 0.807 38 H 0.249 0.751 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.220 0.780 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.967 -3.928 -9.128 13.385 hybrid contribution -2.075 0.103 0.087 2.080 sum 6.892 -3.824 -9.041 11.994 Atomic orbital electron populations 1.22077 0.93346 1.03423 1.03363 1.22123 0.96545 0.78734 1.05094 1.45282 1.45036 1.12964 1.06095 1.22873 1.07240 0.94182 0.93007 1.22423 1.07323 0.97348 0.91063 1.70275 1.14956 1.18451 1.12632 1.22658 1.09959 0.88519 0.90291 1.16362 0.77768 0.84559 0.81940 1.90797 1.46230 1.20703 1.83428 1.45516 1.65831 1.17359 1.05550 1.22945 0.99412 0.98557 0.78688 0.86953 1.21647 0.87406 1.00180 0.86418 1.44461 0.99974 1.76061 1.12391 1.18946 0.83181 1.38046 0.97131 0.89912 1.24841 0.97692 1.00468 0.96469 1.69935 1.23331 1.49843 1.12651 0.86176 0.82286 0.78409 0.78709 1.20885 1.21571 1.20996 1.21939 0.85743 1.00900 0.91360 1.23302 1.02128 0.76492 0.96956 0.86175 1.47245 1.12867 1.11580 1.35591 1.24157 0.98343 0.88387 1.04878 1.23528 0.95103 1.00773 1.03744 1.75011 1.14646 1.04939 1.19289 1.78239 1.13076 1.04859 1.12303 0.90365 0.90812 0.92414 0.87209 0.89201 0.80190 0.80662 0.75101 0.92288 0.92118 0.93306 0.92153 0.92769 0.78030 0.79928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 10.23 37.16 0.38 -1.46 16 2 C 0.10 1.05 6.18 -4.04 -0.02 1.03 16 3 N -0.41 -5.56 2.76 -114.58 -0.32 -5.88 16 4 C -0.03 -0.39 11.53 -16.93 -0.20 -0.58 16 5 C -0.03 -0.37 11.85 -17.96 -0.21 -0.58 16 6 N -0.44 -7.56 10.89 -11.26 -0.12 -7.68 16 7 C 0.15 2.46 7.78 -154.53 -1.20 1.26 16 8 C 0.61 11.29 7.81 -12.53 -0.10 11.20 16 9 O -0.54 -10.40 14.24 5.28 0.08 -10.32 16 10 N -0.69 -12.70 5.08 -53.11 -0.27 -12.97 16 11 C 0.11 1.99 3.11 -66.10 -0.21 1.78 16 12 H 0.11 1.93 7.69 -51.93 -0.40 1.53 16 13 C 0.17 3.75 4.75 -3.06 -0.01 3.74 16 14 N -0.60 -13.07 2.23 -170.07 -0.38 -13.45 16 15 C -0.25 -5.98 10.07 -15.06 -0.15 -6.13 16 16 H 0.08 1.93 7.83 -52.48 -0.41 1.52 16 17 C 0.00 0.09 5.49 -17.43 -0.10 -0.01 16 18 N -0.91 -24.94 10.31 55.49 0.57 -24.37 16 19 Si 0.91 20.53 29.55 -169.99 -5.02 15.51 16 20 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.13 2.19 6.21 -2.53 -0.02 2.17 16 24 C 0.12 1.84 4.06 -65.78 -0.27 1.58 16 25 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 26 N -0.28 -4.86 2.45 -52.68 -0.13 -4.99 16 27 C -0.01 -0.11 10.01 -17.05 -0.17 -0.28 16 28 C -0.07 -1.27 12.05 -17.74 -0.21 -1.48 16 29 N -0.27 -5.09 12.41 30.23 0.38 -4.72 16 30 N -0.11 -1.95 12.21 60.35 0.74 -1.22 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.11 1.35 6.64 -51.93 -0.34 1.01 16 35 H 0.09 0.67 8.13 -51.93 -0.42 0.24 16 36 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.41 7.88 6.41 -40.82 -0.26 7.62 16 39 H 0.06 1.51 7.27 -51.93 -0.38 1.13 16 40 H 0.06 1.57 7.51 -51.93 -0.39 1.18 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.20 3.88 6.81 -52.48 -0.36 3.52 16 45 H 0.18 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 373.62 15.07 5.63 5.63 Total: -1.00 -31.13 373.62 -7.21 -38.34 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -5.87 Total: 13.89 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -2.49 Total: 12.22 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: 0.47 Total: -75.27 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.13 -7.21 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069918430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.670 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds