Wall clock time and date at job start Wed Apr 1 2020 04:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34956 * 126.04147 * 2 1 4 4 C 1.35311 * 107.74830 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.03962 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47199 * 90.00114 * 5 4 3 7 7 O 1.21288 * 119.99424 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00266 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64661 * 359.97438 * 8 6 5 10 10 C 1.54324 * 107.27357 * 178.97493 * 9 8 6 11 11 H 1.08999 * 110.71977 * 96.34351 * 10 9 8 12 12 N 1.46490 * 110.72127 * 219.44478 * 10 9 8 13 13 C 1.36935 * 120.00121 * 271.15198 * 12 10 9 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46653 * 299.99639 * 17 15 13 20 20 H 1.48495 * 109.47483 * 60.00002 * 17 15 13 21 21 C 1.55155 * 103.09699 * 337.89886 * 10 9 8 22 22 H 1.09008 * 111.00198 * 153.48670 * 21 10 9 23 23 N 1.46500 * 111.00254 * 277.33408 * 21 10 9 24 24 C 1.35309 * 125.86669 * 84.71885 * 23 21 10 25 25 C 1.35352 * 106.17389 * 179.90442 * 24 23 21 26 26 N 1.33765 * 106.49788 * 0.35078 * 25 24 23 27 27 N 1.28631 * 108.88727 * 359.77664 * 26 25 24 28 28 C 1.47423 * 125.64984 * 180.02562 * 8 6 5 29 29 C 1.39874 * 107.92241 * 0.26366 * 4 3 2 30 30 N 1.30845 * 108.19885 * 359.55438 * 29 4 3 31 31 H 1.09000 * 109.47413 * 90.00070 * 1 2 3 32 32 H 1.09004 * 109.47237 * 210.00055 * 1 2 3 33 33 H 1.09008 * 109.47237 * 329.99885 * 1 2 3 34 34 H 1.07998 * 126.11953 * 359.96023 * 3 2 1 35 35 H 1.08992 * 109.47236 * 330.00372 * 5 4 3 36 36 H 1.09001 * 109.47287 * 209.99927 * 5 4 3 37 37 H 1.09000 * 109.88588 * 59.55890 * 9 8 6 38 38 H 1.09007 * 110.01334 * 298.46579 * 9 8 6 39 39 H 0.97000 * 120.00577 * 91.15797 * 12 10 9 40 40 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 41 41 H 1.08000 * 126.91630 * 0.02562 * 24 23 21 42 42 H 1.08002 * 126.75167 * 180.12577 * 25 24 23 43 43 H 1.08998 * 110.36291 * 322.93285 * 28 8 6 44 44 H 1.08999 * 110.36601 * 85.14353 * 28 8 6 45 45 H 1.07997 * 125.90268 * 179.73683 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5452 0.0002 6 6 5.1758 1.8391 1.4210 7 8 4.5355 1.3797 2.3430 8 7 6.2519 2.6123 1.6670 9 6 7.1139 3.2301 0.6488 10 6 8.1954 4.0402 1.3942 11 1 9.1114 3.4583 1.4959 12 7 8.4612 5.3059 0.7061 13 6 9.4107 5.3635 -0.2788 14 1 9.9634 4.4758 -0.5487 15 6 9.6630 6.5629 -0.9305 16 7 8.9898 7.6450 -0.6013 17 14 10.9579 6.6413 -2.2746 18 1 11.0349 8.0252 -2.8076 19 1 12.2772 6.2532 -1.7141 20 1 10.5915 5.7081 -3.3700 21 6 7.5499 4.2948 2.7820 22 1 8.3128 4.4288 3.5490 23 7 6.6454 5.4463 2.7371 24 6 5.3488 5.4214 2.3510 25 6 4.8971 6.6923 2.4645 26 7 5.9280 7.4242 2.9013 27 7 6.9490 6.6567 3.0529 28 6 6.7603 2.9777 3.0017 29 6 3.5346 -0.7322 -0.0052 30 7 2.2890 -1.1328 0.0006 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.9281 2.1193 -0.0006 35 1 4.5443 2.4797 -0.5142 36 1 5.5822 1.0337 -0.5130 37 1 6.5238 3.8936 0.0165 38 1 7.5834 2.4581 0.0391 39 1 7.9646 6.1032 0.9482 40 1 8.3172 7.6042 0.0964 41 1 4.7868 4.5604 2.0207 42 1 3.9013 7.0465 2.2423 43 1 5.9322 3.1412 3.6913 44 1 7.4217 2.1991 3.3819 45 1 4.4053 -1.3711 -0.0103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070155129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:07 Heat of formation + Delta-G solvation = 184.601625 kcal Electronic energy + Delta-G solvation = -30657.191258 eV Core-core repulsion = 26522.413291 eV Total energy + Delta-G solvation = -4134.777967 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.99883 -41.40005 -39.97515 -37.84178 -34.58936 -33.87445 -33.62677 -31.98797 -31.32250 -30.67300 -29.71243 -28.31749 -27.58009 -26.06511 -24.16333 -23.54259 -22.31868 -21.89484 -21.27908 -20.72958 -20.26557 -19.23284 -17.83062 -17.54459 -17.17405 -16.87721 -16.02301 -15.82831 -15.61190 -15.14809 -14.76529 -14.64566 -14.52432 -14.19938 -13.85096 -13.73639 -13.55843 -13.48617 -13.08863 -13.00598 -12.93529 -12.59324 -12.54751 -12.21077 -11.95100 -11.82675 -11.39305 -11.27428 -10.84200 -10.80815 -10.75434 -10.55841 -10.09880 -9.99175 -9.78341 -9.56660 -9.35336 -9.16490 -9.03699 -8.69571 -8.54694 -7.34179 -6.26006 -3.33208 1.72249 1.93363 2.32990 2.52039 2.56042 2.61935 2.94771 3.04130 3.42943 3.46000 3.64398 4.04925 4.28059 4.46760 4.54089 4.63639 4.77667 4.80441 4.83112 4.84136 4.89968 4.99306 5.08667 5.15447 5.17932 5.23363 5.34751 5.40970 5.48214 5.50314 5.51764 5.53860 5.61639 5.73513 5.92694 5.96548 6.07251 6.13994 6.26902 6.44462 6.46844 6.81038 6.90221 7.43466 7.52528 7.59130 8.13265 8.57715 8.88382 8.96300 9.84198 9.93184 11.20099 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.003160 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.428966 B = 8859.859313 C = 9958.729605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.378 5.378 3 C 0.070 3.930 4 C -0.218 4.218 5 C -0.056 4.056 6 C 0.529 3.471 7 O -0.537 6.537 8 N -0.621 5.621 9 C 0.068 3.932 10 C 0.173 3.827 11 H 0.093 0.907 12 N -0.718 5.718 13 C -0.356 4.356 14 H 0.070 0.930 15 C -0.032 4.032 16 N -0.927 5.927 17 Si 1.081 2.919 18 H -0.284 1.284 19 H -0.293 1.293 20 H -0.293 1.293 21 C 0.109 3.891 22 H 0.133 0.867 23 N -0.268 5.268 24 C -0.043 4.043 25 C -0.059 4.059 26 N -0.272 5.272 27 N -0.072 5.072 28 C 0.105 3.895 29 C 0.064 3.936 30 N -0.301 5.301 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.172 0.828 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.376 0.624 40 H 0.260 0.740 41 H 0.177 0.823 42 H 0.184 0.816 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.968 -14.604 2.311 19.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.160 5.160 3 C -0.077 4.077 4 C -0.230 4.230 5 C -0.097 4.097 6 C 0.318 3.682 7 O -0.414 6.414 8 N -0.357 5.357 9 C -0.058 4.058 10 C 0.058 3.942 11 H 0.110 0.890 12 N -0.360 5.360 13 C -0.486 4.486 14 H 0.088 0.912 15 C -0.232 4.232 16 N -0.569 5.569 17 Si 0.911 3.089 18 H -0.209 1.209 19 H -0.220 1.220 20 H -0.220 1.220 21 C 0.005 3.995 22 H 0.151 0.849 23 N -0.062 5.062 24 C -0.195 4.195 25 C -0.216 4.216 26 N -0.137 5.137 27 N -0.051 5.051 28 C -0.019 4.019 29 C -0.123 4.123 30 N -0.122 5.122 31 H 0.092 0.908 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.189 0.811 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.212 0.788 40 H 0.071 0.929 41 H 0.194 0.806 42 H 0.201 0.799 43 H 0.105 0.895 44 H 0.114 0.886 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.329 -14.077 2.105 18.831 hybrid contribution -1.198 -0.930 0.648 1.649 sum -13.527 -15.007 2.753 20.390 Atomic orbital electron populations 1.21833 0.74297 1.04485 1.03230 1.48372 1.06556 1.03855 1.57197 1.22252 0.90811 0.93325 1.01299 1.19413 0.93382 0.93664 1.16527 1.19859 0.95963 1.00268 0.93577 1.20498 0.78557 0.77285 0.91888 1.90710 1.53001 1.51187 1.46506 1.48667 1.28672 1.50584 1.07751 1.23445 0.93238 0.97302 0.91849 1.21495 0.95338 0.90100 0.87262 0.88978 1.42417 1.45731 1.04857 1.43026 1.19972 1.16141 0.98134 1.14362 0.91203 1.25895 1.03102 0.91514 1.02735 1.70858 1.25039 1.28964 1.32063 0.83244 0.74672 0.75960 0.75024 1.20891 1.21997 1.22033 1.23426 0.91360 0.81440 1.03271 0.84943 1.47196 1.08826 1.08502 1.41655 1.23455 0.86603 1.01313 1.08094 1.23499 1.00825 0.90470 1.06796 1.75118 0.96788 1.25710 1.16116 1.78410 1.20799 0.87189 1.18710 1.22454 0.98799 0.93926 0.86706 1.23710 0.95173 0.94370 0.98997 1.77325 1.01631 1.08268 1.24961 0.90810 0.89383 0.89515 0.81102 0.88240 0.87940 0.90588 0.90823 0.78791 0.92873 0.80573 0.79917 0.89464 0.88589 0.80244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.47 59.84 0.69 1.32 16 2 N -0.38 -4.01 4.01 -68.16 -0.27 -4.29 16 3 C 0.07 0.72 11.40 -17.22 -0.20 0.52 16 4 C -0.22 -2.45 4.59 -105.05 -0.48 -2.93 16 5 C -0.06 -0.57 5.38 -29.03 -0.16 -0.73 16 6 C 0.53 6.67 7.62 -10.98 -0.08 6.58 16 7 O -0.54 -8.52 16.29 5.55 0.09 -8.43 16 8 N -0.62 -7.53 2.18 -170.38 -0.37 -7.90 16 9 C 0.07 0.93 5.87 -3.07 -0.02 0.92 16 10 C 0.17 2.82 3.46 -66.10 -0.23 2.59 16 11 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 12 N -0.72 -16.27 5.12 -51.66 -0.26 -16.54 16 13 C -0.36 -9.15 9.97 -15.06 -0.15 -9.30 16 14 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 15 C -0.03 -0.90 5.50 -17.43 -0.10 -0.99 16 16 N -0.93 -28.23 13.70 55.49 0.76 -27.47 16 17 Si 1.08 24.60 29.92 -169.99 -5.09 19.52 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 21 C 0.11 1.54 4.07 -65.67 -0.27 1.27 16 22 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 23 N -0.27 -4.47 2.44 -52.57 -0.13 -4.60 16 24 C -0.04 -0.66 10.02 -17.05 -0.17 -0.83 16 25 C -0.06 -0.94 12.05 -17.74 -0.21 -1.16 16 26 N -0.27 -5.39 12.41 30.23 0.38 -5.01 16 27 N -0.07 -1.44 12.23 60.35 0.74 -0.70 16 28 C 0.11 1.22 5.88 -2.41 -0.01 1.21 16 29 C 0.06 0.75 11.96 -17.36 -0.21 0.54 16 30 N -0.30 -3.85 12.58 30.63 0.39 -3.47 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.20 8.03 -51.93 -0.42 0.78 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.38 9.32 4.78 -40.82 -0.20 9.12 16 40 H 0.26 8.05 6.77 -40.82 -0.28 7.78 16 41 H 0.18 2.34 6.81 -52.49 -0.36 1.98 16 42 H 0.18 2.24 8.06 -52.49 -0.42 1.82 16 43 H 0.09 1.06 7.76 -51.93 -0.40 0.66 16 44 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.18 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -36.98 380.84 -5.56 -42.54 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.93 Total: 11.61 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.60 Total: -0.99 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: 1.22 Total: -69.98 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.09 Total: 19.52 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.98 -5.56 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070155129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.139 kcal (2) G-P(sol) polarization free energy of solvation -36.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 184.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds