Wall clock time and date at job start Wed Apr 1 2020 04:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34956 * 126.04147 * 2 1 4 4 C 1.35311 * 107.74830 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.03962 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47199 * 90.00114 * 5 4 3 7 7 O 1.21288 * 119.99424 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00266 * 180.02562 * 6 5 4 9 9 C 1.47019 * 125.64661 * 359.97438 * 8 6 5 10 10 C 1.54324 * 107.27357 * 178.97493 * 9 8 6 11 11 H 1.08999 * 110.71977 * 96.34351 * 10 9 8 12 12 N 1.46490 * 110.72127 * 219.44478 * 10 9 8 13 13 C 1.36935 * 120.00121 * 271.15198 * 12 10 9 14 14 H 1.07997 * 120.00139 * 0.02562 * 13 12 10 15 15 C 1.38816 * 120.00401 * 180.02562 * 13 12 10 16 16 N 1.31624 * 119.99569 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00172 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47055 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46653 * 299.99639 * 17 15 13 20 20 H 1.48495 * 109.47483 * 60.00002 * 17 15 13 21 21 C 1.55155 * 103.09699 * 337.89886 * 10 9 8 22 22 H 1.09008 * 111.00198 * 153.48670 * 21 10 9 23 23 N 1.46500 * 111.00254 * 277.33408 * 21 10 9 24 24 C 1.35309 * 125.86669 * 84.71885 * 23 21 10 25 25 C 1.35352 * 106.17389 * 179.90442 * 24 23 21 26 26 N 1.33765 * 106.49788 * 0.35078 * 25 24 23 27 27 N 1.28631 * 108.88727 * 359.77664 * 26 25 24 28 28 C 1.47423 * 125.64984 * 180.02562 * 8 6 5 29 29 C 1.39874 * 107.92241 * 0.26366 * 4 3 2 30 30 N 1.30845 * 108.19885 * 359.55438 * 29 4 3 31 31 H 1.09000 * 109.47413 * 90.00070 * 1 2 3 32 32 H 1.09004 * 109.47237 * 210.00055 * 1 2 3 33 33 H 1.09008 * 109.47237 * 329.99885 * 1 2 3 34 34 H 1.07998 * 126.11953 * 359.96023 * 3 2 1 35 35 H 1.08992 * 109.47236 * 330.00372 * 5 4 3 36 36 H 1.09001 * 109.47287 * 209.99927 * 5 4 3 37 37 H 1.09000 * 109.88588 * 59.55890 * 9 8 6 38 38 H 1.09007 * 110.01334 * 298.46579 * 9 8 6 39 39 H 0.97000 * 120.00577 * 91.15797 * 12 10 9 40 40 H 0.97001 * 119.99885 * 359.97438 * 16 15 13 41 41 H 1.08000 * 126.91630 * 0.02562 * 24 23 21 42 42 H 1.08002 * 126.75167 * 180.12577 * 25 24 23 43 43 H 1.08998 * 110.36291 * 322.93285 * 28 8 6 44 44 H 1.08999 * 110.36601 * 85.14353 * 28 8 6 45 45 H 1.07997 * 125.90268 * 179.73683 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7680 1.5452 0.0002 6 6 5.1758 1.8391 1.4210 7 8 4.5355 1.3797 2.3430 8 7 6.2519 2.6123 1.6670 9 6 7.1139 3.2301 0.6488 10 6 8.1954 4.0402 1.3942 11 1 9.1114 3.4583 1.4959 12 7 8.4612 5.3059 0.7061 13 6 9.4107 5.3635 -0.2788 14 1 9.9634 4.4758 -0.5487 15 6 9.6630 6.5629 -0.9305 16 7 8.9898 7.6450 -0.6013 17 14 10.9579 6.6413 -2.2746 18 1 11.0349 8.0252 -2.8076 19 1 12.2772 6.2532 -1.7141 20 1 10.5915 5.7081 -3.3700 21 6 7.5499 4.2948 2.7820 22 1 8.3128 4.4288 3.5490 23 7 6.6454 5.4463 2.7371 24 6 5.3488 5.4214 2.3510 25 6 4.8971 6.6923 2.4645 26 7 5.9280 7.4242 2.9013 27 7 6.9490 6.6567 3.0529 28 6 6.7603 2.9777 3.0017 29 6 3.5346 -0.7322 -0.0052 30 7 2.2890 -1.1328 0.0006 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5139 34 1 1.9281 2.1193 -0.0006 35 1 4.5443 2.4797 -0.5142 36 1 5.5822 1.0337 -0.5130 37 1 6.5238 3.8936 0.0165 38 1 7.5834 2.4581 0.0391 39 1 7.9646 6.1032 0.9482 40 1 8.3172 7.6042 0.0964 41 1 4.7868 4.5604 2.0207 42 1 3.9013 7.0465 2.2423 43 1 5.9322 3.1412 3.6913 44 1 7.4217 2.1991 3.3819 45 1 4.4053 -1.3711 -0.0103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070155129.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:06 Heat of formation + Delta-G solvation = 158.640847 kcal Electronic energy + Delta-G solvation = -30658.317002 eV Core-core repulsion = 26522.413291 eV Total energy + Delta-G solvation = -4135.903710 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.31021 -42.18101 -41.05144 -39.02459 -36.27217 -34.96081 -34.52002 -33.04829 -32.77266 -31.96683 -30.88126 -29.13697 -28.93117 -26.85211 -25.73038 -24.92554 -23.66411 -23.18444 -22.02908 -21.71034 -21.41954 -20.22485 -19.51575 -18.81806 -18.29142 -17.65434 -17.39943 -16.88346 -16.52425 -16.17200 -16.01926 -15.88366 -15.78380 -15.41931 -15.30335 -14.88762 -14.75961 -14.42920 -14.01592 -13.85306 -13.83040 -13.56940 -13.39482 -13.24949 -13.12729 -12.75657 -12.71137 -12.62677 -12.52950 -12.42510 -11.92613 -11.88726 -11.55525 -11.37031 -11.23029 -10.96459 -10.89514 -10.34891 -10.34514 -9.75461 -9.33016 -9.23250 -8.37388 -5.37384 0.63888 0.96069 1.36554 1.59893 1.61643 1.62400 1.63595 1.70944 1.74074 1.86168 2.08661 2.71419 2.96075 3.26226 3.48466 3.54617 3.63237 3.65174 3.86229 3.94704 3.98154 4.03445 4.14617 4.22444 4.24040 4.29500 4.30926 4.43681 4.44972 4.47544 4.56133 4.68187 4.74566 4.79965 4.88560 4.89601 4.99787 5.10217 5.17126 5.22595 5.59865 5.66391 5.69302 6.14551 6.41529 6.45874 6.73839 7.01366 7.14677 7.53401 7.91261 8.02469 9.11558 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.011508 B = 0.003160 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.428966 B = 8859.859313 C = 9958.729605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.382 5.382 3 C 0.067 3.933 4 C -0.236 4.236 5 C -0.049 4.049 6 C 0.534 3.466 7 O -0.568 6.568 8 N -0.614 5.614 9 C 0.087 3.913 10 C 0.162 3.838 11 H 0.107 0.893 12 N -0.738 5.738 13 C -0.333 4.333 14 H 0.085 0.915 15 C -0.102 4.102 16 N -0.973 5.973 17 Si 1.127 2.873 18 H -0.303 1.303 19 H -0.276 1.276 20 H -0.270 1.270 21 C 0.107 3.893 22 H 0.143 0.857 23 N -0.264 5.264 24 C -0.034 4.034 25 C -0.064 4.064 26 N -0.309 5.309 27 N -0.115 5.115 28 C 0.114 3.886 29 C 0.051 3.949 30 N -0.337 5.337 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.198 0.802 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.363 0.637 40 H 0.240 0.760 41 H 0.199 0.801 42 H 0.217 0.783 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 -16.799 1.831 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.164 5.164 3 C -0.081 4.081 4 C -0.248 4.248 5 C -0.090 4.090 6 C 0.325 3.675 7 O -0.447 6.447 8 N -0.350 5.350 9 C -0.039 4.039 10 C 0.050 3.950 11 H 0.125 0.875 12 N -0.380 5.380 13 C -0.464 4.464 14 H 0.103 0.897 15 C -0.294 4.294 16 N -0.620 5.620 17 Si 0.952 3.048 18 H -0.230 1.230 19 H -0.202 1.202 20 H -0.196 1.196 21 C 0.004 3.996 22 H 0.161 0.839 23 N -0.058 5.058 24 C -0.186 4.186 25 C -0.222 4.222 26 N -0.174 5.174 27 N -0.094 5.094 28 C -0.010 4.010 29 C -0.135 4.135 30 N -0.159 5.159 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.215 0.785 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.197 0.803 40 H 0.050 0.950 41 H 0.216 0.784 42 H 0.233 0.767 43 H 0.105 0.895 44 H 0.144 0.856 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -12.813 -16.358 1.657 20.845 hybrid contribution -1.147 -0.379 0.870 1.489 sum -13.961 -16.737 2.527 21.942 Atomic orbital electron populations 1.22162 0.72209 1.05686 1.04603 1.48743 1.07882 1.03413 1.56390 1.22765 0.90776 0.94409 1.00113 1.19613 0.94149 0.93589 1.17452 1.19877 0.96209 1.00871 0.92038 1.20853 0.77759 0.76394 0.92482 1.90710 1.53841 1.52412 1.47712 1.48589 1.28541 1.50345 1.07478 1.22981 0.92304 0.97155 0.91434 1.21817 0.97003 0.88159 0.87986 0.87507 1.42596 1.45419 1.06721 1.43281 1.20394 1.14971 0.97900 1.13165 0.89726 1.27213 1.05019 0.91754 1.05377 1.70996 1.26985 1.30618 1.33425 0.82650 0.73396 0.75284 0.73499 1.23013 1.20242 1.19594 1.23611 0.91905 0.81855 1.02222 0.83927 1.47393 1.09516 1.08163 1.40726 1.23809 0.86123 1.01733 1.06893 1.24157 1.01540 0.90583 1.05876 1.75055 0.97873 1.27007 1.17490 1.78344 1.21555 0.88569 1.20907 1.22526 0.98975 0.93008 0.86458 1.24065 0.95456 0.95147 0.98790 1.77254 1.02442 1.09877 1.26363 0.89337 0.89365 0.87188 0.78503 0.87000 0.86322 0.92290 0.88831 0.80253 0.94959 0.78383 0.76662 0.89532 0.85635 0.78901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.96 11.47 127.77 1.47 2.42 16 2 N -0.38 -7.47 4.01 -369.57 -1.48 -8.95 16 3 C 0.07 1.22 11.40 83.54 0.95 2.17 16 4 C -0.24 -4.80 4.59 -20.14 -0.09 -4.89 16 5 C -0.05 -0.86 5.38 29.10 0.16 -0.71 16 6 C 0.53 11.87 7.62 87.66 0.67 12.54 16 7 O -0.57 -16.59 16.29 -3.05 -0.05 -16.64 16 8 N -0.61 -12.91 2.18 -811.36 -1.77 -14.68 16 9 C 0.09 2.14 5.87 86.73 0.51 2.65 16 10 C 0.16 4.95 3.46 46.18 0.16 5.11 16 11 H 0.11 2.98 8.11 -2.39 -0.02 2.96 16 12 N -0.74 -33.01 5.12 -317.35 -1.62 -34.63 16 13 C -0.33 -16.81 9.97 84.03 0.84 -15.98 16 14 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.10 -5.65 5.50 84.86 0.47 -5.18 16 16 N -0.97 -61.01 13.70 21.65 0.30 -60.71 16 17 Si 1.13 49.42 29.92 68.60 2.05 51.47 16 18 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 19 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 20 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 21 C 0.11 2.83 4.07 46.46 0.19 3.02 16 22 H 0.14 3.45 8.14 -2.38 -0.02 3.43 16 23 N -0.26 -8.62 2.44 -320.22 -0.78 -9.40 16 24 C -0.03 -0.98 10.02 83.49 0.84 -0.15 16 25 C -0.06 -2.00 12.05 83.73 1.01 -0.99 16 26 N -0.31 -12.52 12.41 -58.26 -0.72 -13.24 16 27 N -0.11 -4.71 12.23 37.02 0.45 -4.26 16 28 C 0.11 2.30 5.88 86.93 0.51 2.81 16 29 C 0.05 1.13 11.96 85.24 1.02 2.14 16 30 N -0.34 -8.32 12.58 -57.02 -0.72 -9.03 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.71 8.03 -2.39 -0.02 1.69 16 38 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.36 18.27 4.78 -92.71 -0.44 17.83 16 40 H 0.24 15.51 6.77 -92.71 -0.63 14.89 16 41 H 0.20 4.75 6.81 -2.91 -0.02 4.73 16 42 H 0.22 4.91 8.06 -2.91 -0.02 4.89 16 43 H 0.09 1.86 7.76 -2.39 -0.02 1.84 16 44 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -83.08 380.84 5.07 -78.01 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: 0.72 Total: 37.10 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 8.69 Total: 4.97 kcal Atomic # 7 Polarization: -148.56 SS G_CDS: -6.35 Total: -154.91 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.05 Total: 51.47 kcal Total: -83.08 5.07 -78.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070155129.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.650 kcal (2) G-P(sol) polarization free energy of solvation -83.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds