Wall clock time and date at job start Wed Apr 1 2020 03:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47067 * 2 1 4 4 C 1.34259 * 125.75440 * 125.30655 * 3 2 1 5 5 C 1.38043 * 107.41385 * 180.10772 * 4 3 2 6 6 C 1.47436 * 126.41406 * 179.87188 * 5 4 3 7 7 O 1.21610 * 119.99458 * 359.71053 * 6 5 4 8 8 N 1.34772 * 120.00373 * 179.71246 * 6 5 4 9 9 C 1.47026 * 125.64695 * 359.97405 * 8 6 5 10 10 C 1.54319 * 107.27305 * 178.97771 * 9 8 6 11 11 H 1.09004 * 110.71894 * 96.34703 * 10 9 8 12 12 N 1.46498 * 110.71865 * 219.44531 * 10 9 8 13 13 C 1.36943 * 119.99752 * 273.26644 * 12 10 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 10 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 10 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47159 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47290 * 120.00044 * 17 15 13 20 20 H 1.48503 * 109.47163 * 240.00049 * 17 15 13 21 21 C 1.55154 * 102.93928 * 337.80720 * 10 9 8 22 22 H 1.09002 * 111.00391 * 153.57915 * 21 10 9 23 23 N 1.46502 * 111.00569 * 277.42452 * 21 10 9 24 24 C 1.35313 * 125.86414 * 84.71354 * 23 21 10 25 25 C 1.35356 * 106.17288 * 179.90345 * 24 23 21 26 26 N 1.33764 * 106.49683 * 0.35858 * 25 24 23 27 27 N 1.28636 * 108.88712 * 359.77352 * 26 25 24 28 28 C 1.47415 * 125.65206 * 180.02562 * 8 6 5 29 29 C 1.41286 * 107.17414 * 359.60746 * 5 4 3 30 30 N 1.30448 * 108.02255 * 0.23858 * 29 5 4 31 31 H 1.08991 * 109.47540 * 300.00443 * 1 2 3 32 32 H 1.09000 * 109.46884 * 60.00380 * 1 2 3 33 33 H 1.08998 * 109.46966 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47674 * 239.99541 * 2 1 3 35 35 H 1.09000 * 109.46884 * 119.99620 * 2 1 3 36 36 H 1.07996 * 126.29096 * 359.95596 * 4 3 2 37 37 H 1.09003 * 109.88485 * 59.55446 * 9 8 6 38 38 H 1.09007 * 109.88016 * 298.39827 * 9 8 6 39 39 H 0.97001 * 120.00384 * 93.55000 * 12 10 9 40 40 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 41 41 H 1.08003 * 126.91586 * 0.02562 * 24 23 21 42 42 H 1.08004 * 126.74797 * 180.12188 * 25 24 23 43 43 H 1.09001 * 110.36616 * 322.92800 * 28 8 6 44 44 H 1.08999 * 110.37454 * 85.14006 * 28 8 6 45 45 H 1.08000 * 125.99076 * 180.24515 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8735 1.9110 0.8892 5 6 3.0717 3.2307 0.5361 6 6 3.9339 4.2030 1.2325 7 8 4.5518 3.8665 2.2244 8 7 4.0373 5.4646 0.7699 9 6 3.3495 6.0025 -0.4130 10 6 3.7482 7.4880 -0.5388 11 1 4.5737 7.6076 -1.2405 12 7 2.5998 8.2999 -0.9490 13 6 2.3085 8.4515 -2.2785 14 1 2.9227 7.9688 -3.0243 15 6 1.2238 9.2255 -2.6674 16 7 0.4757 9.8141 -1.7584 17 14 0.8260 9.4317 -4.4808 18 1 1.8112 8.6736 -5.2931 19 1 -0.5396 8.9139 -4.7501 20 1 0.8896 10.8709 -4.8411 21 6 4.1910 7.8522 0.9030 22 1 4.9087 8.6725 0.8958 23 7 3.0342 8.1769 1.7413 24 6 2.2630 7.2866 2.4074 25 6 1.3185 8.0125 3.0501 26 7 1.5502 9.2938 2.7433 27 7 2.5734 9.3574 1.9663 28 6 4.8595 6.5334 1.3654 29 6 2.2984 3.4736 -0.6211 30 7 1.6773 2.3690 -0.9307 31 1 -0.3634 0.5138 0.8898 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8935 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.3219 1.3993 1.7279 37 1 2.2703 5.9179 -0.2848 38 1 3.6629 5.4578 -1.3037 39 1 2.0483 8.7335 -0.2791 40 1 -0.2825 10.3546 -2.0302 41 1 2.3790 6.2129 2.4245 42 1 0.5303 7.6318 3.6827 43 1 4.8449 6.4619 2.4530 44 1 5.8833 6.4752 0.9959 45 1 2.2330 4.4097 -1.1558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070162245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:31 Heat of formation + Delta-G solvation = 188.142522 kcal Electronic energy + Delta-G solvation = -31081.892537 eV Core-core repulsion = 26947.268115 eV Total energy + Delta-G solvation = -4134.624422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.81674 -41.50997 -39.68813 -37.61115 -34.82675 -34.25476 -33.47522 -31.31726 -30.68684 -30.60675 -30.28062 -28.88393 -27.77510 -24.90262 -24.25391 -23.55641 -22.44175 -22.13302 -21.30796 -20.84239 -20.02318 -19.50947 -17.74873 -17.57602 -17.15535 -16.38263 -15.92544 -15.60853 -15.44353 -15.34188 -14.68517 -14.58200 -14.46487 -14.20456 -13.80450 -13.69435 -13.39614 -13.22617 -13.04600 -12.89139 -12.65374 -12.46473 -12.42950 -12.17383 -11.82345 -11.48924 -11.23196 -11.13807 -11.06131 -10.96275 -10.89719 -10.40586 -10.17263 -9.94221 -9.88194 -9.70395 -9.55222 -9.11403 -8.87007 -8.83901 -8.54060 -7.23380 -5.89194 -3.25707 1.41689 2.11711 2.15544 2.16807 2.72702 2.97905 3.14279 3.36347 3.41293 3.44769 3.45181 4.10304 4.20915 4.45191 4.53738 4.58224 4.61344 4.76518 4.82151 4.94051 4.97970 4.98851 5.20231 5.25762 5.29092 5.34358 5.43688 5.48283 5.48585 5.50344 5.60944 5.65595 5.72510 5.77493 5.90414 6.01796 6.21081 6.23803 6.36951 6.40774 6.62448 6.66196 7.08196 7.45389 7.52651 7.56142 8.22132 8.24386 9.07205 9.36829 9.84759 10.19070 11.30403 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008652 B = 0.004203 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.550761 B = 6659.929182 C = 8466.488646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 N -0.363 5.363 4 C 0.125 3.875 5 C -0.290 4.290 6 C 0.612 3.388 7 O -0.558 6.558 8 N -0.613 5.613 9 C 0.060 3.940 10 C 0.166 3.834 11 H 0.092 0.908 12 N -0.708 5.708 13 C -0.267 4.267 14 H 0.076 0.924 15 C 0.002 3.998 16 N -0.914 5.914 17 Si 0.909 3.091 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.112 3.888 22 H 0.134 0.866 23 N -0.269 5.269 24 C -0.043 4.043 25 C -0.059 4.059 26 N -0.271 5.271 27 N -0.065 5.065 28 C 0.107 3.893 29 C 0.076 3.924 30 N -0.294 5.294 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.186 0.814 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.394 0.606 40 H 0.259 0.741 41 H 0.176 0.824 42 H 0.181 0.819 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.142 -18.680 6.206 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.142 5.142 4 C -0.027 4.027 5 C -0.305 4.305 6 C 0.403 3.597 7 O -0.437 6.437 8 N -0.347 5.347 9 C -0.066 4.066 10 C 0.051 3.949 11 H 0.109 0.891 12 N -0.349 5.349 13 C -0.397 4.397 14 H 0.094 0.906 15 C -0.197 4.197 16 N -0.559 5.559 17 Si 0.739 3.261 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.008 3.992 22 H 0.151 0.849 23 N -0.062 5.062 24 C -0.194 4.194 25 C -0.216 4.216 26 N -0.137 5.137 27 N -0.045 5.045 28 C -0.017 4.017 29 C -0.112 4.112 30 N -0.113 5.113 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.203 0.797 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.231 0.769 40 H 0.069 0.931 41 H 0.194 0.806 42 H 0.199 0.801 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.693 -18.093 5.439 19.731 hybrid contribution -0.126 -0.698 -0.194 0.736 sum 5.566 -18.791 5.245 20.287 Atomic orbital electron populations 1.22060 0.93352 1.03008 1.04019 1.21802 0.96509 0.77019 1.04066 1.48722 1.34018 1.10717 1.20765 1.22904 0.91814 0.93525 0.94451 1.20102 1.11732 0.95027 1.03645 1.16881 0.80212 0.79871 0.82742 1.90760 1.48015 1.78244 1.26717 1.48286 1.47030 1.09566 1.29843 1.23795 0.98112 0.98013 0.86682 1.21600 0.93672 0.89032 0.90595 0.89084 1.42452 1.29881 1.56259 1.06356 1.19207 1.10300 1.27213 0.82977 0.90598 1.24844 0.97832 0.99287 0.97720 1.69719 1.19082 1.35220 1.31830 0.86128 0.77960 0.77601 0.84439 1.20334 1.21674 1.21604 1.23296 0.85526 0.98523 0.91844 0.84869 1.47145 1.22050 1.05324 1.31713 1.23437 0.96465 0.98456 1.01028 1.23447 1.02236 0.90259 1.05672 1.75093 1.08940 1.19196 1.10486 1.78386 1.08149 1.04032 1.13933 1.22443 0.95157 0.83875 1.00188 1.25016 0.93225 0.97908 0.95039 1.77251 1.23790 0.97167 1.13136 0.91885 0.90768 0.90552 0.89368 0.88394 0.79727 0.89964 0.90713 0.76889 0.93099 0.80641 0.80144 0.89280 0.88441 0.77909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 10.09 37.16 0.37 -0.72 16 2 C 0.13 0.82 7.21 -4.04 -0.03 0.79 16 3 N -0.36 -3.86 3.65 -60.81 -0.22 -4.08 16 4 C 0.12 1.36 11.25 -16.56 -0.19 1.17 16 5 C -0.29 -3.83 6.09 -105.07 -0.64 -4.47 16 6 C 0.61 8.74 7.61 -12.52 -0.10 8.64 16 7 O -0.56 -9.12 17.16 5.27 0.09 -9.03 16 8 N -0.61 -8.15 2.17 -171.78 -0.37 -8.52 16 9 C 0.06 0.88 4.35 -3.06 -0.01 0.86 16 10 C 0.17 2.75 3.46 -66.10 -0.23 2.52 16 11 H 0.09 1.39 8.12 -51.93 -0.42 0.97 16 12 N -0.71 -16.25 5.12 -51.65 -0.26 -16.51 16 13 C -0.27 -6.81 9.98 -15.06 -0.15 -6.96 16 14 H 0.08 1.83 7.83 -52.49 -0.41 1.42 16 15 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 16 N -0.91 -27.19 13.06 55.49 0.72 -26.47 16 17 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.11 1.62 4.06 -65.78 -0.27 1.36 16 22 H 0.13 1.71 8.14 -51.93 -0.42 1.29 16 23 N -0.27 -4.68 2.46 -52.68 -0.13 -4.81 16 24 C -0.04 -0.70 10.01 -17.04 -0.17 -0.87 16 25 C -0.06 -1.02 12.05 -17.74 -0.21 -1.24 16 26 N -0.27 -5.65 12.41 30.24 0.38 -5.28 16 27 N -0.07 -1.37 12.18 60.35 0.74 -0.63 16 28 C 0.11 1.29 5.89 -2.53 -0.01 1.27 16 29 C 0.08 1.04 10.45 -16.98 -0.18 0.86 16 30 N -0.29 -4.03 12.33 30.86 0.38 -3.65 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.35 8.06 -51.93 -0.42 -0.07 16 36 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.08 1.38 6.72 -51.93 -0.35 1.04 16 38 H 0.07 1.01 7.00 -51.92 -0.36 0.65 16 39 H 0.39 10.12 5.90 -40.82 -0.24 9.88 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.18 2.61 6.79 -52.48 -0.36 2.25 16 42 H 0.18 2.46 8.06 -52.48 -0.42 2.04 16 43 H 0.09 1.10 7.77 -51.93 -0.40 0.70 16 44 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.20 2.82 4.47 -52.49 -0.23 2.58 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -35.31 375.34 -5.67 -40.99 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.72 Total: 12.71 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.91 Total: 3.17 kcal Atomic # 7 Polarization: -71.18 SS G_CDS: 1.23 Total: -69.95 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.31 -5.67 -40.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070162245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 229.130 kcal (2) G-P(sol) polarization free energy of solvation -35.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds