Wall clock time and date at job start Wed Apr 1 2020 03:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47082 * 2 1 4 4 N 1.28449 * 125.18982 * 267.17610 * 3 2 1 5 5 C 1.30866 * 110.92500 * 180.28193 * 4 3 2 6 6 C 1.39672 * 107.86507 * 359.71523 * 5 4 3 7 7 C 1.36604 * 125.19418 * 86.96795 * 3 2 1 8 8 C 1.47167 * 126.87904 * 359.97438 * 7 3 2 9 9 O 1.21623 * 120.00228 * 353.26594 * 8 7 3 10 10 N 1.34779 * 119.99603 * 173.26339 * 8 7 3 11 11 C 1.47423 * 125.64834 * 354.69637 * 10 8 7 12 12 C 1.54918 * 104.82824 * 204.09021 * 11 10 8 13 13 H 1.08996 * 111.00484 * 81.06208 * 12 11 10 14 14 N 1.46500 * 111.00404 * 204.91590 * 12 11 10 15 15 C 1.36932 * 119.99794 * 267.20234 * 14 12 11 16 16 H 1.08001 * 120.00775 * 359.97438 * 15 14 12 17 17 C 1.38819 * 119.99800 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99857 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 119.99792 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46933 * 90.00390 * 19 17 15 21 21 H 1.48506 * 109.46922 * 210.00155 * 19 17 15 22 22 H 1.48496 * 109.47386 * 329.99866 * 19 17 15 23 23 C 1.55154 * 101.58187 * 322.98900 * 12 11 10 24 24 H 1.09002 * 110.87042 * 153.93533 * 23 12 11 25 25 N 1.46493 * 110.72311 * 277.14010 * 23 12 11 26 26 C 1.35320 * 125.87093 * 80.26848 * 25 23 12 27 27 C 1.35350 * 106.17582 * 180.18817 * 26 25 23 28 28 N 1.33779 * 106.49582 * 359.59358 * 27 26 25 29 29 N 1.28632 * 108.88700 * 0.26319 * 28 27 26 30 30 C 1.47024 * 125.64422 * 174.65031 * 10 8 7 31 31 H 1.08995 * 109.47096 * 175.28270 * 1 2 3 32 32 H 1.09004 * 109.46747 * 295.27962 * 1 2 3 33 33 H 1.08997 * 109.47156 * 55.28398 * 1 2 3 34 34 H 1.08993 * 109.47270 * 239.99887 * 2 1 3 35 35 H 1.09006 * 109.47279 * 119.99515 * 2 1 3 36 36 H 1.08004 * 126.06759 * 179.75328 * 5 4 3 37 37 H 1.07997 * 127.32194 * 180.02562 * 6 5 4 38 38 H 1.08995 * 110.36951 * 322.92669 * 11 10 8 39 39 H 1.08999 * 110.36780 * 85.14743 * 11 10 8 40 40 H 0.96999 * 119.99968 * 87.19033 * 14 12 11 41 41 H 0.96994 * 119.99862 * 179.97438 * 18 17 15 42 42 H 1.07993 * 126.90740 * 0.04284 * 26 25 23 43 43 H 1.08000 * 126.75091 * 179.85408 * 27 26 25 44 44 H 1.09003 * 109.88043 * 59.56458 * 30 10 8 45 45 H 1.09002 * 110.01190 * 298.46576 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3138 2.0619 -1.0485 5 6 2.7273 3.2609 -0.7261 6 6 2.6896 3.3673 0.6660 7 6 2.2251 2.1432 1.1148 8 6 2.0038 1.7410 2.5130 9 8 1.4801 0.6720 2.7627 10 7 2.3815 2.5572 3.5168 11 6 3.1219 3.8227 3.3628 12 6 3.8286 4.0368 4.7247 13 1 4.7434 3.4476 4.7871 14 7 4.1044 5.4570 4.9556 15 6 5.3110 5.9889 4.5865 16 1 6.0595 5.3615 4.1256 17 6 5.5726 7.3344 4.8057 18 7 6.7326 7.8456 4.4514 19 14 4.2782 8.4195 5.6036 20 1 4.4563 8.4001 7.0778 21 1 4.4236 9.8111 5.1057 22 1 2.9259 7.9102 5.2615 23 6 2.7587 3.5096 5.7170 24 1 3.2230 3.1603 6.6392 25 7 1.7606 4.5437 6.0008 26 6 0.7115 4.8711 5.2113 27 6 0.0574 5.8702 5.8485 28 7 0.7243 6.0959 6.9861 29 7 1.7282 5.2939 7.0464 30 6 2.1224 2.3335 4.9466 31 1 -0.3633 -1.0241 -0.0845 32 1 -0.3633 0.4389 0.9293 33 1 -0.3633 0.5852 -0.8447 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 3.0412 4.0317 -1.4145 37 1 2.9641 4.2230 1.2650 38 1 3.8576 3.7369 2.5631 39 1 2.4335 4.6425 3.1577 40 1 3.4322 6.0205 5.3697 41 1 6.9152 8.7859 4.6043 42 1 0.4503 4.4265 4.2625 43 1 -0.8308 6.3814 5.5079 44 1 2.5762 1.3943 5.2630 45 1 1.0485 2.3070 5.1314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070184337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:35 Heat of formation + Delta-G solvation = 193.497480 kcal Electronic energy + Delta-G solvation = -31413.986402 eV Core-core repulsion = 27279.594189 eV Total energy + Delta-G solvation = -4134.392213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.19232 -42.66038 -40.06266 -37.99868 -34.96656 -34.39738 -33.83423 -31.66314 -31.43182 -30.82837 -29.93542 -29.43029 -28.26011 -25.28819 -24.08278 -23.70377 -22.70321 -22.47666 -21.70930 -21.29661 -20.36541 -19.54135 -18.24413 -17.83145 -17.31241 -16.66096 -16.19460 -15.99344 -15.56886 -15.37328 -14.96130 -14.81589 -14.68530 -14.29106 -14.08059 -13.98259 -13.63964 -13.46258 -13.12748 -12.93782 -12.81218 -12.74219 -12.54773 -12.31133 -11.81808 -11.61740 -11.52248 -11.47043 -11.26806 -11.02630 -10.82477 -10.75362 -10.33024 -10.27654 -9.98380 -9.76669 -9.36488 -9.25818 -9.19760 -9.11223 -8.87784 -7.63429 -6.00168 -3.42122 1.11293 1.74903 2.09016 2.39476 2.52111 2.77318 2.82007 3.02338 3.30378 3.34779 3.43317 3.87004 4.25032 4.34556 4.42312 4.43307 4.59261 4.67403 4.72370 4.86981 4.93594 4.98906 5.05751 5.07106 5.18920 5.25344 5.31411 5.35142 5.36477 5.38142 5.45153 5.56321 5.60532 5.67820 5.80217 5.82066 5.86838 5.96891 6.11080 6.28562 6.40092 6.60362 6.72215 7.13377 7.66459 7.77126 7.97543 8.15957 8.69794 8.89449 9.63061 9.75367 11.15690 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012002 B = 0.004011 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.289360 B = 6978.886511 C = 8317.269544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.257 5.257 4 N -0.278 5.278 5 C -0.004 4.004 6 C -0.188 4.188 7 C -0.039 4.039 8 C 0.610 3.390 9 O -0.545 6.545 10 N -0.602 5.602 11 C 0.054 3.946 12 C 0.174 3.826 13 H 0.105 0.895 14 N -0.727 5.727 15 C -0.269 4.269 16 H 0.097 0.903 17 C 0.024 3.976 18 N -0.918 5.918 19 Si 0.879 3.121 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.109 3.891 24 H 0.139 0.861 25 N -0.272 5.272 26 C -0.047 4.047 27 C -0.054 4.054 28 N -0.275 5.275 29 N -0.075 5.075 30 C 0.111 3.889 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.097 0.903 35 H 0.110 0.890 36 H 0.188 0.812 37 H 0.175 0.825 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.369 0.631 41 H 0.264 0.736 42 H 0.182 0.818 43 H 0.186 0.814 44 H 0.100 0.900 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 -14.465 -6.723 20.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.003 4.003 3 N -0.046 5.046 4 N -0.110 5.110 5 C -0.179 4.179 6 C -0.217 4.217 7 C -0.167 4.167 8 C 0.398 3.602 9 O -0.423 6.423 10 N -0.336 5.336 11 C -0.071 4.071 12 C 0.059 3.941 13 H 0.123 0.877 14 N -0.368 5.368 15 C -0.398 4.398 16 H 0.115 0.885 17 C -0.175 4.175 18 N -0.563 5.563 19 Si 0.708 3.292 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.205 1.205 23 C 0.005 3.995 24 H 0.157 0.843 25 N -0.066 5.066 26 C -0.198 4.198 27 C -0.211 4.211 28 N -0.141 5.141 29 N -0.054 5.054 30 C -0.013 4.013 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.128 0.872 36 H 0.205 0.795 37 H 0.192 0.808 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.204 0.796 41 H 0.074 0.926 42 H 0.199 0.801 43 H 0.203 0.797 44 H 0.118 0.882 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.877 -15.488 -6.277 20.503 hybrid contribution -1.174 1.274 -0.066 1.734 sum -13.052 -14.214 -6.344 20.313 Atomic orbital electron populations 1.22084 0.93490 1.03304 1.03265 1.22078 0.96184 0.76684 1.05345 1.45815 1.44828 1.12231 1.01694 1.73198 1.17356 1.06815 1.13654 1.23651 1.04397 0.94644 0.95249 1.22948 1.04902 0.97945 0.95863 1.21151 1.12174 0.94035 0.89292 1.16459 0.78239 0.82950 0.82522 1.90783 1.45000 1.22036 1.84479 1.48039 1.56223 1.23851 1.05493 1.24090 0.95978 0.83866 1.03200 1.21679 0.94656 0.88774 0.88969 0.87740 1.42666 1.17573 1.03598 1.72960 1.18981 0.91063 0.93868 1.35841 0.88515 1.24637 0.96413 0.96703 0.99713 1.69687 1.21876 1.13700 1.51054 0.86661 0.81490 0.80735 0.80291 1.20312 1.21351 1.20485 1.23322 0.88288 0.85494 1.02433 0.84329 1.47322 1.19132 1.25969 1.14188 1.23502 0.92339 1.02894 1.01028 1.23533 1.03646 0.99924 0.94035 1.75112 1.02314 1.17596 1.19054 1.78382 1.16659 1.02685 1.07680 1.22184 1.01610 0.97533 0.79997 0.90257 0.91290 0.92011 0.88458 0.87193 0.79549 0.80817 0.88262 0.90490 0.79550 0.92576 0.80103 0.79686 0.88175 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.21 37.16 0.38 -1.02 16 2 C 0.12 1.12 6.35 -4.04 -0.03 1.10 16 3 N -0.26 -3.16 3.35 -57.14 -0.19 -3.35 16 4 N -0.28 -3.57 11.90 30.59 0.36 -3.20 16 5 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 6 C -0.19 -2.30 9.28 -38.98 -0.36 -2.66 16 7 C -0.04 -0.50 6.89 -82.06 -0.57 -1.06 16 8 C 0.61 7.82 7.81 -12.63 -0.10 7.72 16 9 O -0.54 -7.66 14.72 5.26 0.08 -7.58 16 10 N -0.60 -6.99 3.33 -171.87 -0.57 -7.57 16 11 C 0.05 0.71 4.32 -2.53 -0.01 0.70 16 12 C 0.17 2.63 3.58 -65.78 -0.24 2.40 16 13 H 0.10 1.53 8.09 -51.93 -0.42 1.11 16 14 N -0.73 -15.14 5.01 -51.35 -0.26 -15.40 16 15 C -0.27 -6.82 10.44 -15.06 -0.16 -6.98 16 16 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 17 C 0.02 0.65 5.50 -17.43 -0.10 0.56 16 18 N -0.92 -27.19 13.97 55.49 0.78 -26.42 16 19 Si 0.88 22.11 27.73 -169.99 -4.71 17.39 16 20 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.87 6.52 56.52 0.37 -6.51 16 23 C 0.11 1.36 3.97 -66.10 -0.26 1.10 16 24 H 0.14 1.55 8.14 -51.93 -0.42 1.12 16 25 N -0.27 -4.06 2.24 -52.99 -0.12 -4.18 16 26 C -0.05 -0.63 9.23 -17.04 -0.16 -0.79 16 27 C -0.05 -0.79 12.05 -17.73 -0.21 -1.00 16 28 N -0.27 -5.00 12.41 30.24 0.38 -4.62 16 29 N -0.07 -1.36 12.58 60.35 0.76 -0.60 16 30 C 0.11 1.14 5.95 -3.06 -0.02 1.13 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 1.09 6.66 -51.93 -0.35 0.75 16 36 H 0.19 1.68 8.06 -52.48 -0.42 1.26 16 37 H 0.17 2.05 4.98 -52.49 -0.26 1.79 16 38 H 0.10 1.32 5.89 -51.93 -0.31 1.02 16 39 H 0.08 1.06 6.84 -51.93 -0.36 0.70 16 40 H 0.37 8.14 4.08 -40.82 -0.17 7.98 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.18 1.97 7.60 -52.49 -0.40 1.57 16 43 H 0.19 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.08 0.84 7.41 -51.93 -0.38 0.45 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -33.63 367.99 -5.58 -39.21 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.59 Total: 9.83 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.03 Total: 0.94 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: 1.13 Total: -65.34 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: 0.08 Total: -7.58 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.63 -5.58 -39.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070184337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 232.706 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds