Wall clock time and date at job start Wed Apr 1 2020 03:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46999 * 2 1 4 4 C 1.35405 * 126.44333 * 265.03077 * 3 2 1 5 5 C 1.35560 * 107.16232 * 179.73272 * 4 3 2 6 6 N 1.33103 * 108.34811 * 0.02562 * 5 4 3 7 7 C 1.31610 * 109.09860 * 359.97438 * 6 5 4 8 8 C 1.47405 * 125.86645 * 180.02562 * 7 6 5 9 9 O 1.21608 * 120.00315 * 179.97438 * 8 7 6 10 10 N 1.34779 * 119.99937 * 359.97438 * 8 7 6 11 11 C 1.47022 * 125.64898 * 0.02562 * 10 8 7 12 12 C 1.54319 * 107.27340 * 181.02820 * 11 10 8 13 13 H 1.08998 * 110.72130 * 140.73620 * 12 11 10 14 14 N 1.46507 * 110.71999 * 263.83130 * 12 11 10 15 15 C 1.36938 * 119.99726 * 273.54499 * 14 12 11 16 16 H 1.07997 * 120.00238 * 0.02562 * 15 14 12 17 17 C 1.38815 * 119.99518 * 179.97438 * 15 14 12 18 18 N 1.31616 * 119.99955 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99754 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47203 * 89.99805 * 19 17 15 21 21 H 1.48498 * 109.47139 * 209.99627 * 19 17 15 22 22 H 1.48496 * 109.47191 * 330.00122 * 19 17 15 23 23 C 1.55159 * 102.94366 * 22.19194 * 12 11 10 24 24 H 1.09005 * 110.99843 * 82.57006 * 23 12 11 25 25 N 1.46498 * 111.00627 * 206.42504 * 23 12 11 26 26 C 1.35310 * 125.86631 * 84.71379 * 25 23 12 27 27 C 1.35352 * 106.17388 * 179.90020 * 26 25 23 28 28 N 1.33772 * 106.49632 * 0.36203 * 27 26 25 29 29 N 1.28636 * 108.88712 * 359.76387 * 28 27 26 30 30 C 1.47420 * 125.64779 * 179.71552 * 10 8 7 31 31 H 1.08998 * 109.47247 * 299.99628 * 1 2 3 32 32 H 1.08997 * 109.47794 * 60.00016 * 1 2 3 33 33 H 1.09005 * 109.47059 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46584 * 240.00824 * 2 1 3 35 35 H 1.08990 * 109.47279 * 120.00384 * 2 1 3 36 36 H 1.08001 * 126.41392 * 359.69264 * 4 3 2 37 37 H 1.08002 * 125.82700 * 179.97438 * 5 4 3 38 38 H 1.08997 * 109.88451 * 300.44872 * 11 10 8 39 39 H 1.08998 * 109.87975 * 61.45318 * 11 10 8 40 40 H 0.96996 * 119.99694 * 93.54215 * 14 12 11 41 41 H 0.97009 * 119.99785 * 180.02562 * 18 17 15 42 42 H 1.07995 * 126.91595 * 0.02562 * 26 25 23 43 43 H 1.07996 * 126.75332 * 180.12367 * 27 26 25 44 44 H 1.09004 * 110.36816 * 274.74283 * 30 10 8 45 45 H 1.09003 * 110.37159 * 37.06797 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3754 2.1081 -1.0852 5 6 2.7596 3.3294 -0.6398 6 7 2.6409 3.3484 0.6858 7 6 2.1937 2.1802 1.0949 8 6 1.9275 1.7989 2.4937 9 8 1.5132 0.6852 2.7521 10 7 2.1432 2.6847 3.4863 11 6 2.6395 4.0582 3.3163 12 6 2.7526 4.6820 4.7232 13 1 3.6489 5.2972 4.8014 14 7 1.5574 5.4682 5.0392 15 6 1.4793 6.7800 4.6543 16 1 2.2986 7.2350 4.1174 17 6 0.3467 7.5248 4.9533 18 7 -0.6523 6.9699 5.6063 19 14 0.2404 9.3145 4.4289 20 1 -0.3648 9.3986 3.0754 21 1 -0.6018 10.0643 5.3951 22 1 1.6033 9.9033 4.3990 23 6 2.8525 3.4396 5.6473 24 1 3.8749 3.0636 5.6871 25 7 2.3540 3.7431 6.9910 26 6 1.0608 3.6959 7.3862 27 6 1.0532 4.0457 8.6938 28 7 2.3244 4.2943 9.0279 29 7 3.0704 4.1058 7.9970 30 6 1.9147 2.4390 4.9218 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 2.3579 1.7766 -2.1129 37 1 3.1042 4.1472 -1.2553 38 1 3.6188 4.0420 2.8381 39 1 1.9400 4.6324 2.7087 40 1 0.8215 5.0595 5.5211 41 1 -1.4440 7.4903 5.8149 42 1 0.2068 3.4305 6.7809 43 1 0.1901 4.1146 9.3392 44 1 0.8739 2.6358 5.1794 45 1 2.1827 1.4142 5.1788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070186987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:12 Heat of formation + Delta-G solvation = 147.340105 kcal Electronic energy + Delta-G solvation = -31117.052955 eV Core-core repulsion = 26980.659207 eV Total energy + Delta-G solvation = -4136.393747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.16815 -43.28015 -41.02115 -39.07736 -36.23206 -35.68634 -35.06583 -33.01023 -32.00241 -31.64336 -31.01638 -30.03560 -29.22952 -26.25826 -25.77036 -24.83735 -23.69836 -23.47207 -22.61399 -22.25807 -21.40668 -20.38676 -19.46438 -18.84735 -18.30449 -17.61784 -17.14530 -17.00679 -16.80061 -16.39787 -16.02400 -15.94513 -15.66911 -15.46125 -15.28811 -14.85064 -14.75875 -14.67513 -14.45523 -14.30199 -13.78968 -13.60105 -13.36700 -13.19541 -13.00661 -12.85349 -12.75556 -12.71455 -12.46699 -12.31042 -12.15025 -11.89311 -11.81562 -11.45761 -11.17581 -11.02615 -10.83732 -10.80502 -10.19432 -9.94358 -9.47255 -9.11653 -7.97722 -5.27234 0.30365 0.72379 1.06519 1.46641 1.47747 1.52293 1.55193 1.64917 1.72464 2.13983 2.35472 2.52502 2.89456 3.17725 3.31004 3.49895 3.58206 3.66341 3.73218 3.81180 3.88181 4.04680 4.06174 4.25908 4.34305 4.34739 4.38649 4.42281 4.48201 4.51655 4.53351 4.71325 4.79002 4.80243 4.92766 4.98662 5.14095 5.16781 5.28825 5.32820 5.51537 5.69232 5.71823 5.95238 6.18011 6.22279 6.67063 7.02003 7.31726 7.59169 7.95199 8.21134 9.24262 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.009771 B = 0.004053 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.057178 B = 6906.069071 C = 8776.486036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.093 3.907 3 N -0.413 5.413 4 C -0.002 4.002 5 C -0.053 4.053 6 N -0.459 5.459 7 C 0.104 3.896 8 C 0.619 3.381 9 O -0.561 6.561 10 N -0.587 5.587 11 C 0.111 3.889 12 C 0.153 3.847 13 H 0.087 0.913 14 N -0.720 5.720 15 C -0.244 4.244 16 H 0.078 0.922 17 C -0.060 4.060 18 N -0.956 5.956 19 Si 0.964 3.036 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.272 1.272 23 C 0.123 3.877 24 H 0.157 0.843 25 N -0.262 5.262 26 C -0.029 4.029 27 C -0.057 4.057 28 N -0.304 5.304 29 N -0.109 5.109 30 C 0.117 3.883 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.133 0.867 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.198 0.802 38 H 0.089 0.911 39 H 0.065 0.935 40 H 0.379 0.621 41 H 0.251 0.749 42 H 0.198 0.802 43 H 0.210 0.790 44 H 0.076 0.924 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.092 -16.285 -13.994 22.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.027 4.027 3 N -0.094 5.094 4 C -0.141 4.141 5 C -0.207 4.207 6 N -0.182 5.182 7 C -0.153 4.153 8 C 0.408 3.592 9 O -0.441 6.441 10 N -0.319 5.319 11 C -0.014 4.014 12 C 0.040 3.960 13 H 0.105 0.895 14 N -0.362 5.362 15 C -0.376 4.376 16 H 0.096 0.904 17 C -0.253 4.253 18 N -0.605 5.605 19 Si 0.794 3.206 20 H -0.215 1.215 21 H -0.226 1.226 22 H -0.197 1.197 23 C 0.019 3.981 24 H 0.174 0.826 25 N -0.055 5.055 26 C -0.180 4.180 27 C -0.214 4.214 28 N -0.170 5.170 29 N -0.088 5.088 30 C -0.006 4.006 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.151 0.849 35 H 0.111 0.889 36 H 0.246 0.754 37 H 0.215 0.785 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.214 0.786 41 H 0.060 0.940 42 H 0.215 0.785 43 H 0.227 0.773 44 H 0.094 0.906 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.452 -15.974 -12.850 21.492 hybrid contribution -2.044 0.513 -0.927 2.302 sum 4.408 -15.460 -13.776 21.172 Atomic orbital electron populations 1.22033 0.93632 1.04243 1.01691 1.22307 0.96220 0.77758 1.06413 1.45518 1.44633 1.13502 1.05759 1.23657 1.03406 0.92860 0.94170 1.23039 1.08031 0.99156 0.90435 1.70331 1.14939 1.18596 1.14302 1.22144 1.13586 0.89527 0.90050 1.16210 0.77568 0.83233 0.82209 1.90758 1.48602 1.20910 1.83806 1.47768 1.64053 1.14454 1.05581 1.22949 1.00300 0.79871 0.98312 1.21862 0.92409 0.90761 0.90923 0.89504 1.42437 1.16809 1.09283 1.67648 1.19483 1.00979 0.87896 1.29209 0.90437 1.25397 0.96743 1.01725 1.01471 1.69758 1.07446 1.37121 1.46221 0.85285 0.77459 0.80906 0.76945 1.21475 1.22579 1.19748 1.23291 1.01164 0.97459 0.76180 0.82581 1.46964 1.05911 1.42404 1.10183 1.23748 0.88960 1.07704 0.97580 1.23910 0.96526 1.05515 0.95463 1.74948 1.03390 1.18491 1.20135 1.78110 1.21499 1.18288 0.90933 1.22361 0.99139 0.99698 0.79451 0.94969 0.91374 0.88308 0.84885 0.88942 0.75418 0.78539 0.89287 0.91638 0.78584 0.94016 0.78531 0.77346 0.90584 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.23 71.98 0.74 -1.77 16 2 C 0.09 1.43 6.18 86.38 0.53 1.96 16 3 N -0.41 -8.64 2.76 -516.45 -1.42 -10.06 16 4 C 0.00 -0.03 11.53 83.52 0.96 0.94 16 5 C -0.05 -1.13 11.85 83.88 0.99 -0.14 16 6 N -0.46 -13.47 8.67 -189.53 -1.64 -15.11 16 7 C 0.10 2.99 7.65 136.28 1.04 4.03 16 8 C 0.62 19.49 7.84 86.66 0.68 20.17 16 9 O -0.56 -18.33 14.75 -4.05 -0.06 -18.39 16 10 N -0.59 -18.06 3.32 -815.23 -2.71 -20.77 16 11 C 0.11 3.67 5.26 86.73 0.46 4.12 16 12 C 0.15 5.42 3.48 46.18 0.16 5.59 16 13 H 0.09 3.09 8.12 -2.39 -0.02 3.08 16 14 N -0.72 -33.07 4.78 -317.32 -1.52 -34.59 16 15 C -0.24 -12.83 9.98 84.03 0.84 -11.99 16 16 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 18 N -0.96 -55.53 13.06 21.65 0.28 -55.25 16 19 Si 0.96 45.47 29.55 68.60 2.03 47.50 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.12 3.64 3.99 46.47 0.19 3.83 16 24 H 0.16 3.76 8.14 -2.38 -0.02 3.74 16 25 N -0.26 -9.05 3.09 -320.20 -0.99 -10.04 16 26 C -0.03 -0.98 8.63 83.49 0.72 -0.26 16 27 C -0.06 -1.99 12.05 83.73 1.01 -0.99 16 28 N -0.30 -12.19 12.41 -58.26 -0.72 -12.91 16 29 N -0.11 -4.29 13.17 37.02 0.49 -3.81 16 30 C 0.12 3.29 6.24 86.94 0.54 3.84 16 31 H 0.03 0.75 7.84 -2.39 -0.02 0.73 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.13 0.91 8.13 -2.38 -0.02 0.89 16 35 H 0.09 1.76 6.64 -2.39 -0.02 1.74 16 36 H 0.23 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.20 3.07 8.06 -2.91 -0.02 3.04 16 38 H 0.09 2.68 7.63 -2.39 -0.02 2.66 16 39 H 0.07 2.62 7.64 -2.39 -0.02 2.61 16 40 H 0.38 18.22 5.37 -92.71 -0.50 17.72 16 41 H 0.25 14.34 8.31 -92.70 -0.77 13.57 16 42 H 0.20 6.10 6.59 -2.91 -0.02 6.08 16 43 H 0.21 5.88 8.06 -2.91 -0.02 5.85 16 44 H 0.08 2.29 6.25 -2.38 -0.01 2.28 16 45 H 0.11 2.70 8.03 -2.39 -0.02 2.68 16 Total: -1.00 -74.71 374.26 3.60 -71.11 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: 0.54 Total: 35.81 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 9.33 Total: 26.49 kcal Atomic # 7 Polarization: -154.30 SS G_CDS: -8.23 Total: -162.53 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.06 Total: -18.39 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -74.71 3.60 -71.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070186987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.452 kcal (2) G-P(sol) polarization free energy of solvation -74.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds