Wall clock time and date at job start Wed Apr 1 2020 03:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46840 * 2 1 4 4 C 1.35851 * 126.13137 * 270.02354 * 3 2 1 5 5 N 1.30173 * 108.99879 * 179.74087 * 4 3 2 6 6 C 1.35755 * 108.87068 * 0.38195 * 5 4 3 7 7 C 1.47316 * 126.23953 * 179.88549 * 6 5 4 8 8 O 1.21621 * 120.00622 * 179.68605 * 7 6 5 9 9 N 1.34783 * 120.00085 * 359.68483 * 7 6 5 10 10 C 1.47423 * 125.64381 * 0.04516 * 9 7 6 11 11 C 1.55389 * 104.87137 * 204.09458 * 10 9 7 12 12 H 1.09005 * 111.02427 * 80.98581 * 11 10 9 13 13 N 1.46501 * 111.18632 * 204.97676 * 11 10 9 14 14 C 1.36932 * 120.00344 * 267.03809 * 13 11 10 15 15 H 1.08001 * 120.00175 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00183 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47069 * 59.99737 * 18 16 14 20 20 H 1.48496 * 109.47027 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47023 * 300.00322 * 18 16 14 22 22 C 1.55147 * 101.36706 * 323.01775 * 11 10 9 23 23 H 1.09003 * 110.72567 * 153.94634 * 22 11 10 24 24 N 1.46499 * 110.71905 * 277.04263 * 22 11 10 25 25 C 1.35311 * 125.87102 * 82.85382 * 24 22 11 26 26 C 1.35349 * 106.18014 * 180.18691 * 25 24 22 27 27 N 1.33776 * 106.49589 * 359.58896 * 26 25 24 28 28 N 1.28634 * 108.88224 * 0.26432 * 27 26 25 29 29 C 1.47023 * 125.65129 * 179.97438 * 9 7 6 30 30 C 1.35378 * 126.13666 * 89.99314 * 3 2 1 31 31 H 1.09008 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.48028 * 300.00080 * 1 2 3 33 33 H 1.09002 * 109.47158 * 60.01108 * 1 2 3 34 34 H 1.09000 * 109.47281 * 239.99570 * 2 1 3 35 35 H 1.08998 * 109.46631 * 119.99645 * 2 1 3 36 36 H 1.07998 * 125.49880 * 359.97438 * 4 3 2 37 37 H 1.08997 * 110.36755 * 322.92881 * 10 9 7 38 38 H 1.08997 * 110.37030 * 85.14147 * 10 9 7 39 39 H 0.96998 * 119.99902 * 87.04413 * 13 11 10 40 40 H 0.96989 * 119.99870 * 179.97438 * 17 16 14 41 41 H 1.08005 * 126.91425 * 0.04514 * 25 24 22 42 42 H 1.08002 * 126.75754 * 179.85677 * 26 25 24 43 43 H 1.09004 * 109.87700 * 59.56273 * 29 9 7 44 44 H 1.08996 * 110.01005 * 298.47018 * 29 9 7 45 45 H 1.07998 * 126.56131 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2848 2.1366 -1.0972 5 7 2.6943 3.3113 -0.7138 6 6 2.7131 3.3483 0.6432 7 6 3.1168 4.4933 1.4776 8 8 3.0845 4.4036 2.6900 9 7 3.5219 5.6404 0.8973 10 6 3.6081 5.8854 -0.5538 11 6 4.6591 7.0198 -0.7051 12 1 5.6731 6.6225 -0.6573 13 7 4.4505 7.7732 -1.9441 14 6 5.1215 7.4168 -3.0833 15 1 5.8043 6.5802 -3.0686 16 6 4.9243 8.1310 -4.2572 17 7 4.0926 9.1510 -4.2752 18 14 5.8391 7.6444 -5.8115 19 1 5.4867 6.2489 -6.1770 20 1 5.4563 8.5581 -6.9177 21 1 7.3021 7.7397 -5.5751 22 6 4.3457 7.8947 0.5373 23 1 5.2289 8.4521 0.8494 24 7 3.2312 8.8049 0.2623 25 6 1.9164 8.4947 0.3400 26 6 1.2429 9.6192 0.0025 27 7 2.1664 10.5528 -0.2528 28 7 3.3342 10.0387 -0.0900 29 6 3.9497 6.8551 1.6068 30 6 2.2842 2.1340 1.0933 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 2.1713 1.8157 -2.1222 37 1 3.9437 4.9865 -1.0710 38 1 2.6419 6.2073 -0.9423 39 1 3.8371 8.5244 -1.9575 40 1 3.9550 9.6501 -5.0953 41 1 1.4900 7.5409 0.6138 42 1 0.1708 9.7404 -0.0464 43 1 4.8073 6.6311 2.2412 44 1 3.1304 7.2406 2.2136 45 1 2.1774 1.8311 2.1244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070312229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:16 Heat of formation + Delta-G solvation = 169.403588 kcal Electronic energy + Delta-G solvation = -30783.638754 eV Core-core repulsion = 26648.201751 eV Total energy + Delta-G solvation = -4135.437003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.76630 -42.33455 -39.62540 -37.55672 -35.33600 -34.16444 -33.40838 -31.17551 -30.74598 -30.46771 -30.05769 -28.99870 -27.54555 -25.04317 -24.09921 -23.57820 -22.56255 -22.10567 -21.25732 -21.11894 -19.99343 -19.33800 -17.72703 -17.60668 -17.12169 -16.46533 -15.89064 -15.59460 -15.43111 -15.09752 -14.69131 -14.57244 -14.54490 -14.15106 -13.99353 -13.73983 -13.62956 -13.31263 -13.14307 -12.87916 -12.75859 -12.67849 -12.40868 -12.11360 -11.90763 -11.46633 -11.08317 -11.07486 -10.90012 -10.81726 -10.38307 -10.21416 -10.16405 -10.01334 -9.95529 -9.78798 -9.50519 -8.98993 -8.82753 -8.79486 -8.39265 -7.11771 -5.80303 -3.15031 1.48814 2.16759 2.33855 2.37467 2.77014 3.12584 3.18579 3.41870 3.46011 3.48107 3.59256 4.12801 4.23381 4.37652 4.41671 4.51833 4.55464 4.67912 4.77952 4.97063 4.99139 5.07916 5.09075 5.11095 5.29730 5.36066 5.44524 5.52170 5.56425 5.61155 5.68893 5.75910 5.86927 5.89048 6.03059 6.22323 6.28042 6.33806 6.59505 6.64024 6.67078 6.90683 7.13279 7.59086 7.63867 7.73815 8.29575 8.33283 9.11762 9.45452 9.94316 10.29161 11.39807 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.003912 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.773163 B = 7156.281178 C = 9169.540675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.099 3.901 3 N -0.458 5.458 4 C 0.185 3.815 5 N -0.448 5.448 6 C -0.056 4.056 7 C 0.618 3.382 8 O -0.556 6.556 9 N -0.603 5.603 10 C 0.075 3.925 11 C 0.164 3.836 12 H 0.090 0.910 13 N -0.704 5.704 14 C -0.259 4.259 15 H 0.074 0.926 16 C -0.001 4.001 17 N -0.918 5.918 18 Si 0.910 3.090 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.110 3.890 23 H 0.131 0.869 24 N -0.268 5.268 25 C -0.048 4.048 26 C -0.057 4.057 27 N -0.273 5.273 28 N -0.065 5.065 29 C 0.107 3.893 30 C 0.031 3.969 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.210 0.790 37 H 0.105 0.895 38 H 0.068 0.932 39 H 0.392 0.608 40 H 0.259 0.741 41 H 0.177 0.823 42 H 0.182 0.818 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 -19.207 11.482 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.141 5.141 4 C -0.098 4.098 5 N -0.166 5.166 6 C -0.185 4.185 7 C 0.407 3.593 8 O -0.435 6.435 9 N -0.335 5.335 10 C -0.050 4.050 11 C 0.049 3.951 12 H 0.108 0.892 13 N -0.344 5.344 14 C -0.390 4.390 15 H 0.092 0.908 16 C -0.199 4.199 17 N -0.564 5.564 18 Si 0.740 3.260 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.006 3.994 23 H 0.148 0.852 24 N -0.062 5.062 25 C -0.199 4.199 26 C -0.214 4.214 27 N -0.139 5.139 28 N -0.045 5.045 29 C -0.017 4.017 30 C -0.108 4.108 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.227 0.773 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.228 0.772 40 H 0.069 0.931 41 H 0.194 0.806 42 H 0.199 0.801 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.480 -17.622 11.110 21.540 hybrid contribution -0.851 -1.821 -0.368 2.044 sum -6.331 -19.443 10.742 23.098 Atomic orbital electron populations 1.22184 0.93803 1.03356 1.03593 1.21946 0.95858 0.79477 1.05042 1.45592 1.48542 1.13080 1.06873 1.25331 1.03408 0.87480 0.93624 1.70859 1.17048 1.18569 1.10084 1.20394 1.12322 0.95104 0.90668 1.16535 0.76581 0.80346 0.85804 1.90775 1.56534 1.82812 1.13347 1.48246 1.64398 1.11467 1.09426 1.23872 1.01250 1.02122 0.77795 1.21844 0.97804 0.89803 0.85641 0.89215 1.42294 1.52320 1.35283 1.04486 1.19138 1.20111 1.12285 0.87435 0.90786 1.24819 0.99366 0.97614 0.98092 1.69691 1.38192 1.20921 1.27551 0.86249 0.79328 0.77518 0.82884 1.21103 1.21619 1.21070 1.23238 0.87433 0.89724 0.99002 0.85154 1.47227 1.06471 1.09488 1.42984 1.23395 0.84145 1.02445 1.09894 1.23428 1.00940 0.90463 1.06593 1.75090 0.94939 1.26701 1.17154 1.78376 1.18738 0.91564 1.15794 1.22142 1.01468 0.84295 0.93783 1.22486 1.03327 0.91889 0.93112 0.90376 0.91682 0.91491 0.88393 0.88794 0.77331 0.87703 0.91368 0.77165 0.93122 0.80591 0.80099 0.88853 0.90345 0.79793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.65 10.24 37.16 0.38 -0.27 16 2 C 0.10 0.40 6.84 -4.04 -0.03 0.37 16 3 N -0.46 -3.80 2.73 -118.36 -0.32 -4.13 16 4 C 0.19 1.90 12.55 -89.90 -1.13 0.77 16 5 N -0.45 -6.38 8.38 -11.03 -0.09 -6.48 16 6 C -0.06 -0.79 6.80 -83.09 -0.57 -1.35 16 7 C 0.62 9.77 7.84 -12.57 -0.10 9.67 16 8 O -0.56 -9.64 17.21 5.26 0.09 -9.55 16 9 N -0.60 -9.24 3.33 -171.52 -0.57 -9.81 16 10 C 0.08 1.31 5.40 -2.27 -0.01 1.30 16 11 C 0.16 3.09 3.60 -65.53 -0.24 2.86 16 12 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 13 N -0.70 -17.34 5.22 -51.10 -0.27 -17.61 16 14 C -0.26 -7.03 9.96 -15.06 -0.15 -7.18 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C 0.00 -0.03 5.50 -17.43 -0.10 -0.12 16 17 N -0.92 -28.14 13.06 55.49 0.72 -27.41 16 18 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C 0.11 1.77 3.96 -66.10 -0.26 1.51 16 23 H 0.13 1.90 8.14 -51.93 -0.42 1.48 16 24 N -0.27 -4.91 2.31 -52.99 -0.12 -5.04 16 25 C -0.05 -0.81 9.26 -17.05 -0.16 -0.96 16 26 C -0.06 -1.00 12.05 -17.73 -0.21 -1.22 16 27 N -0.27 -5.81 12.41 30.24 0.38 -5.43 16 28 N -0.07 -1.41 12.43 60.35 0.75 -0.66 16 29 C 0.11 1.48 5.91 -3.06 -0.02 1.47 16 30 C 0.03 0.33 11.26 -16.64 -0.19 0.14 16 31 H 0.08 0.16 8.14 -51.92 -0.42 -0.26 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.21 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.10 1.93 6.15 -51.93 -0.32 1.61 16 38 H 0.07 1.33 7.40 -51.93 -0.38 0.95 16 39 H 0.39 10.61 6.11 -40.82 -0.25 10.36 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.18 2.59 7.70 -52.48 -0.40 2.19 16 42 H 0.18 2.47 8.06 -52.49 -0.42 2.05 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.06 7.29 -51.93 -0.38 0.68 16 45 H 0.19 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -36.87 379.16 -7.45 -44.32 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.93 Total: 11.96 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -2.77 Total: 6.99 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: 0.47 Total: -76.55 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.87 -7.45 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070312229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.722 kcal (2) G-P(sol) polarization free energy of solvation -36.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds