Wall clock time and date at job start Wed Apr 1 2020 03:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46840 * 2 1 4 4 C 1.35851 * 126.13137 * 270.02354 * 3 2 1 5 5 N 1.30173 * 108.99879 * 179.74087 * 4 3 2 6 6 C 1.35755 * 108.87068 * 0.38195 * 5 4 3 7 7 C 1.47316 * 126.23953 * 179.88549 * 6 5 4 8 8 O 1.21621 * 120.00622 * 179.68605 * 7 6 5 9 9 N 1.34783 * 120.00085 * 359.68483 * 7 6 5 10 10 C 1.47423 * 125.64381 * 0.04516 * 9 7 6 11 11 C 1.55389 * 104.87137 * 204.09458 * 10 9 7 12 12 H 1.09005 * 111.02427 * 80.98581 * 11 10 9 13 13 N 1.46501 * 111.18632 * 204.97676 * 11 10 9 14 14 C 1.36932 * 120.00344 * 267.03809 * 13 11 10 15 15 H 1.08001 * 120.00175 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00183 * 180.02562 * 14 13 11 17 17 N 1.31620 * 120.00154 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00130 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47069 * 59.99737 * 18 16 14 20 20 H 1.48496 * 109.47027 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47023 * 300.00322 * 18 16 14 22 22 C 1.55147 * 101.36706 * 323.01775 * 11 10 9 23 23 H 1.09003 * 110.72567 * 153.94634 * 22 11 10 24 24 N 1.46499 * 110.71905 * 277.04263 * 22 11 10 25 25 C 1.35311 * 125.87102 * 82.85382 * 24 22 11 26 26 C 1.35349 * 106.18014 * 180.18691 * 25 24 22 27 27 N 1.33776 * 106.49589 * 359.58896 * 26 25 24 28 28 N 1.28634 * 108.88224 * 0.26432 * 27 26 25 29 29 C 1.47023 * 125.65129 * 179.97438 * 9 7 6 30 30 C 1.35378 * 126.13666 * 89.99314 * 3 2 1 31 31 H 1.09008 * 109.46843 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.48028 * 300.00080 * 1 2 3 33 33 H 1.09002 * 109.47158 * 60.01108 * 1 2 3 34 34 H 1.09000 * 109.47281 * 239.99570 * 2 1 3 35 35 H 1.08998 * 109.46631 * 119.99645 * 2 1 3 36 36 H 1.07998 * 125.49880 * 359.97438 * 4 3 2 37 37 H 1.08997 * 110.36755 * 322.92881 * 10 9 7 38 38 H 1.08997 * 110.37030 * 85.14147 * 10 9 7 39 39 H 0.96998 * 119.99902 * 87.04413 * 13 11 10 40 40 H 0.96989 * 119.99870 * 179.97438 * 17 16 14 41 41 H 1.08005 * 126.91425 * 0.04514 * 25 24 22 42 42 H 1.08002 * 126.75754 * 179.85677 * 26 25 24 43 43 H 1.09004 * 109.87700 * 59.56273 * 29 9 7 44 44 H 1.08996 * 110.01005 * 298.47018 * 29 9 7 45 45 H 1.07998 * 126.56131 * 0.02562 * 30 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2848 2.1366 -1.0972 5 7 2.6943 3.3113 -0.7138 6 6 2.7131 3.3483 0.6432 7 6 3.1168 4.4933 1.4776 8 8 3.0845 4.4036 2.6900 9 7 3.5219 5.6404 0.8973 10 6 3.6081 5.8854 -0.5538 11 6 4.6591 7.0198 -0.7051 12 1 5.6731 6.6225 -0.6573 13 7 4.4505 7.7732 -1.9441 14 6 5.1215 7.4168 -3.0833 15 1 5.8043 6.5802 -3.0686 16 6 4.9243 8.1310 -4.2572 17 7 4.0926 9.1510 -4.2752 18 14 5.8391 7.6444 -5.8115 19 1 5.4867 6.2489 -6.1770 20 1 5.4563 8.5581 -6.9177 21 1 7.3021 7.7397 -5.5751 22 6 4.3457 7.8947 0.5373 23 1 5.2289 8.4521 0.8494 24 7 3.2312 8.8049 0.2623 25 6 1.9164 8.4947 0.3400 26 6 1.2429 9.6192 0.0025 27 7 2.1664 10.5528 -0.2528 28 7 3.3342 10.0387 -0.0900 29 6 3.9497 6.8551 1.6068 30 6 2.2842 2.1340 1.0933 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3635 0.5138 0.8899 33 1 -0.3633 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 2.1713 1.8157 -2.1222 37 1 3.9437 4.9865 -1.0710 38 1 2.6419 6.2073 -0.9423 39 1 3.8371 8.5244 -1.9575 40 1 3.9550 9.6501 -5.0953 41 1 1.4900 7.5409 0.6138 42 1 0.1708 9.7404 -0.0464 43 1 4.8073 6.6311 2.2412 44 1 3.1304 7.2406 2.2136 45 1 2.1774 1.8311 2.1244 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070312229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:15 Heat of formation + Delta-G solvation = 144.512079 kcal Electronic energy + Delta-G solvation = -30784.718131 eV Core-core repulsion = 26648.201751 eV Total energy + Delta-G solvation = -4136.516380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.21893 -43.14351 -40.89345 -38.90653 -36.01111 -35.89016 -34.84281 -33.03866 -31.93663 -31.40307 -31.12426 -30.12955 -29.11995 -26.25989 -25.55772 -24.57528 -23.71576 -23.59633 -22.60485 -21.86605 -21.40592 -20.42728 -19.47203 -18.84467 -18.29893 -17.64770 -17.04889 -16.89138 -16.60098 -16.30285 -16.06320 -15.92037 -15.41514 -15.27392 -15.19618 -14.91095 -14.70413 -14.60315 -14.55196 -14.23334 -13.89936 -13.54018 -13.43984 -13.00183 -12.95409 -12.90384 -12.70276 -12.55946 -12.42789 -12.18464 -12.13242 -11.90536 -11.80237 -11.37449 -11.18095 -10.99240 -10.77818 -10.70463 -10.24448 -9.88681 -9.50351 -9.11758 -7.94424 -5.28658 0.57438 0.72770 1.40359 1.46071 1.47931 1.51297 1.57507 1.68287 1.72389 2.00221 2.52285 2.54614 3.00083 3.25937 3.43869 3.56727 3.63705 3.73838 3.78252 3.91945 4.03586 4.11556 4.12916 4.16215 4.19613 4.27050 4.35610 4.42659 4.44131 4.51468 4.58818 4.72344 4.85853 4.88540 4.97812 5.09232 5.11883 5.22918 5.25001 5.30968 5.49772 5.54817 5.72724 6.14603 6.21367 6.38600 6.81534 7.16663 7.30014 7.62734 7.97446 8.20952 9.27002 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008964 B = 0.003912 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3122.773163 B = 7156.281178 C = 9169.540675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.447 5.447 4 C 0.189 3.811 5 N -0.494 5.494 6 C -0.099 4.099 7 C 0.618 3.382 8 O -0.575 6.575 9 N -0.601 5.601 10 C 0.104 3.896 11 C 0.156 3.844 12 H 0.100 0.900 13 N -0.721 5.721 14 C -0.251 4.251 15 H 0.086 0.914 16 C -0.068 4.068 17 N -0.964 5.964 18 Si 0.976 3.024 19 H -0.273 1.273 20 H -0.301 1.301 21 H -0.276 1.276 22 C 0.113 3.887 23 H 0.145 0.855 24 N -0.265 5.265 25 C -0.040 4.040 26 C -0.061 4.061 27 N -0.308 5.308 28 N -0.106 5.106 29 C 0.115 3.885 30 C 0.049 3.951 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.113 0.887 36 H 0.238 0.762 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.378 0.622 40 H 0.250 0.750 41 H 0.198 0.802 42 H 0.216 0.784 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.837 -22.598 12.364 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.128 5.128 4 C -0.095 4.095 5 N -0.213 5.213 6 C -0.227 4.227 7 C 0.409 3.591 8 O -0.455 6.455 9 N -0.334 5.334 10 C -0.022 4.022 11 C 0.043 3.957 12 H 0.118 0.882 13 N -0.360 5.360 14 C -0.382 4.382 15 H 0.104 0.896 16 C -0.261 4.261 17 N -0.613 5.613 18 Si 0.804 3.196 19 H -0.199 1.199 20 H -0.227 1.227 21 H -0.202 1.202 22 C 0.010 3.990 23 H 0.163 0.837 24 N -0.059 5.059 25 C -0.192 4.192 26 C -0.218 4.218 27 N -0.173 5.173 28 N -0.085 5.085 29 C -0.009 4.009 30 C -0.092 4.092 31 H 0.118 0.882 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.131 0.869 36 H 0.255 0.745 37 H 0.115 0.885 38 H 0.063 0.937 39 H 0.212 0.788 40 H 0.059 0.941 41 H 0.215 0.785 42 H 0.233 0.767 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.581 -21.078 12.040 24.907 hybrid contribution -0.888 -0.966 -0.543 1.420 sum -6.468 -22.045 11.496 25.690 Atomic orbital electron populations 1.22163 0.93548 1.04411 1.02454 1.22340 0.95944 0.77159 1.07217 1.45845 1.47056 1.14267 1.05612 1.25847 1.01840 0.86720 0.95108 1.70739 1.19100 1.20994 1.10449 1.20357 1.15474 0.95927 0.90943 1.16821 0.75906 0.80583 0.85804 1.90753 1.57552 1.83171 1.14067 1.48162 1.64828 1.12057 1.08334 1.23246 0.99159 1.00687 0.79083 1.22066 0.98702 0.90312 0.84643 0.88210 1.42413 1.52115 1.35696 1.05821 1.19596 1.18949 1.11460 0.88187 0.89630 1.25640 1.00911 0.98113 1.01401 1.69884 1.40876 1.22870 1.27702 0.85190 0.78316 0.77256 0.78805 1.19865 1.22732 1.20161 1.23333 0.87802 0.89802 0.98075 0.83689 1.47386 1.07421 1.08974 1.42110 1.23774 0.83633 1.03020 1.08760 1.24082 1.02277 0.89898 1.05567 1.75027 0.95683 1.28324 1.18242 1.78309 1.19282 0.93098 1.17784 1.22207 1.02747 0.82979 0.92927 1.22760 1.01105 0.90944 0.94402 0.88239 0.92924 0.92503 0.86052 0.86894 0.74549 0.88528 0.93666 0.78785 0.94146 0.78492 0.76738 0.86350 0.89561 0.77903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.78 10.24 71.98 0.74 -0.04 16 2 C 0.09 0.41 6.84 86.38 0.59 1.00 16 3 N -0.45 -6.20 2.73 -528.38 -1.44 -7.64 16 4 C 0.19 3.50 12.55 180.10 2.26 5.76 16 5 N -0.49 -13.65 8.38 -188.82 -1.58 -15.23 16 6 C -0.10 -2.69 6.80 40.50 0.28 -2.42 16 7 C 0.62 18.87 7.84 86.63 0.68 19.55 16 8 O -0.57 -19.14 17.21 -4.10 -0.07 -19.21 16 9 N -0.60 -17.81 3.33 -814.82 -2.71 -20.52 16 10 C 0.10 3.61 5.40 87.02 0.47 4.08 16 11 C 0.16 5.81 3.60 46.55 0.17 5.98 16 12 H 0.10 3.53 8.09 -2.38 -0.02 3.51 16 13 N -0.72 -36.01 5.22 -315.59 -1.65 -37.66 16 14 C -0.25 -13.67 9.96 84.03 0.84 -12.83 16 15 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 17 N -0.96 -61.00 13.06 21.65 0.28 -60.72 16 18 Si 0.98 46.14 29.55 68.60 2.03 48.16 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.11 3.56 3.96 46.18 0.18 3.74 16 23 H 0.15 4.11 8.14 -2.39 -0.02 4.09 16 24 N -0.26 -9.72 2.31 -321.56 -0.74 -10.47 16 25 C -0.04 -1.34 9.26 83.49 0.77 -0.57 16 26 C -0.06 -2.11 12.05 83.73 1.01 -1.10 16 27 N -0.31 -13.36 12.41 -58.25 -0.72 -14.09 16 28 N -0.11 -4.67 12.43 37.02 0.46 -4.21 16 29 C 0.12 2.99 5.91 86.73 0.51 3.50 16 30 C 0.05 0.95 11.26 83.72 0.94 1.89 16 31 H 0.10 0.07 8.14 -2.38 -0.02 0.05 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.12 0.04 8.14 -2.39 -0.02 0.02 16 35 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.24 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.10 3.56 6.15 -2.39 -0.01 3.54 16 38 H 0.04 1.78 7.40 -2.39 -0.02 1.76 16 39 H 0.38 21.03 6.11 -92.71 -0.57 20.46 16 40 H 0.25 15.49 8.31 -92.72 -0.77 14.72 16 41 H 0.20 5.58 7.70 -2.91 -0.02 5.55 16 42 H 0.22 5.60 8.06 -2.91 -0.02 5.57 16 43 H 0.12 2.56 8.14 -2.38 -0.02 2.54 16 44 H 0.09 2.17 7.29 -2.39 -0.02 2.15 16 45 H 0.20 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -83.07 379.16 4.22 -78.85 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: 0.46 Total: 37.62 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 9.91 Total: 25.11 kcal Atomic # 7 Polarization: -162.43 SS G_CDS: -8.10 Total: -170.53 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.07 Total: -19.21 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -83.07 4.22 -78.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070312229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.360 kcal (2) G-P(sol) polarization free energy of solvation -83.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds