Wall clock time and date at job start Wed Apr 1 2020 04:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35045 * 126.39447 * 2 1 4 4 N 1.30500 * 108.69651 * 180.02562 * 3 2 1 5 5 C 1.34122 * 109.26002 * 0.02562 * 4 3 2 6 6 C 1.50705 * 125.99491 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.79144 * 331.73967 * 6 5 4 8 8 C 1.54942 * 110.74301 * 208.44320 * 6 5 4 9 9 N 1.48113 * 103.25098 * 204.28540 * 8 6 5 10 10 C 1.34781 * 127.02791 * 219.55349 * 9 8 6 11 11 O 1.21545 * 120.00491 * 359.70706 * 10 9 8 12 12 C 1.47872 * 119.99451 * 179.70927 * 10 9 8 13 13 N 1.34553 * 126.05411 * 0.02627 * 12 10 9 14 14 C 1.30862 * 107.26838 * 180.02562 * 13 12 10 15 15 N 1.34580 * 107.63067 * 359.97438 * 14 13 12 16 16 C 1.46499 * 125.75191 * 180.02562 * 15 14 13 17 17 N 1.28853 * 108.50070 * 359.72791 * 15 14 13 18 18 C 1.47486 * 105.93573 * 39.29221 * 9 8 6 19 19 C 1.54003 * 107.08454 * 334.55302 * 18 9 8 20 20 H 1.08994 * 110.32658 * 120.29927 * 19 18 9 21 21 N 1.46499 * 110.32454 * 242.41682 * 19 18 9 22 22 C 1.36938 * 119.99778 * 273.54483 * 21 19 18 23 23 H 1.07997 * 119.99897 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00208 * 179.97438 * 22 21 19 25 25 N 1.31627 * 119.99880 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00286 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47124 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47296 * 120.00258 * 26 24 22 29 29 H 1.48501 * 109.47350 * 240.00097 * 26 24 22 30 30 C 1.34675 * 108.02129 * 0.25830 * 5 4 3 31 31 H 1.09006 * 109.47225 * 89.97419 * 1 2 3 32 32 H 1.09002 * 109.47170 * 209.97075 * 1 2 3 33 33 H 1.09000 * 109.47414 * 329.97050 * 1 2 3 34 34 H 1.07998 * 125.65466 * 0.06292 * 3 2 1 35 35 H 1.08997 * 110.66229 * 85.84341 * 8 6 5 36 36 H 1.08998 * 110.65593 * 322.72868 * 8 6 5 37 37 H 1.08006 * 126.18636 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47290 * 89.99750 * 16 15 14 39 39 H 1.08998 * 109.47275 * 209.99827 * 16 15 14 40 40 H 1.09002 * 109.46987 * 329.99647 * 16 15 14 41 41 H 1.08999 * 109.91088 * 93.91448 * 18 9 8 42 42 H 1.09002 * 109.90796 * 214.99765 * 18 9 8 43 43 H 0.97003 * 120.00560 * 93.54003 * 21 19 18 44 44 H 0.96999 * 119.99888 * 179.97438 * 25 24 22 45 45 H 1.07993 * 126.59119 * 179.69714 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6504 -0.0015 6 6 4.7891 -1.5025 -0.0029 7 1 5.6154 -0.9807 -0.4856 8 6 4.5208 -2.8632 -0.6938 9 7 5.5479 -3.7521 -0.1032 10 6 6.2625 -4.7014 -0.7394 11 8 6.0877 -4.9011 -1.9255 12 6 7.2592 -5.5001 0.0059 13 7 7.5499 -5.3826 1.3143 14 6 8.4795 -6.2625 1.5863 15 7 8.7617 -6.9224 0.4479 16 6 9.7479 -7.9960 0.3028 17 7 8.0140 -6.4551 -0.4917 18 6 5.6331 -3.3816 1.3218 19 6 5.1700 -1.9174 1.4371 20 1 4.3043 -1.8449 2.0953 21 7 6.2605 -1.0767 1.9373 22 6 6.4583 -0.9425 3.2856 23 1 5.8102 -1.4561 3.9802 24 6 7.4919 -0.1463 3.7596 25 7 8.2815 0.4801 2.9131 26 14 7.7613 0.0373 5.5989 27 1 6.7459 -0.7623 6.3302 28 1 9.1200 -0.4475 5.9510 29 1 7.6325 1.4674 5.9778 30 6 2.2772 -1.1018 -0.0073 31 1 -0.3634 0.0005 -1.0277 32 1 -0.3633 -0.8903 0.5134 33 1 -0.3634 0.8897 0.5143 34 1 1.9334 2.1145 0.0010 35 1 4.6575 -2.7807 -1.7720 36 1 3.5192 -3.2231 -0.4584 37 1 8.9375 -6.4291 2.5502 38 1 9.2689 -8.9571 0.4902 39 1 10.1529 -7.9831 -0.7091 40 1 10.5556 -7.8468 1.0194 41 1 4.9808 -4.0250 1.9123 42 1 6.6619 -3.4772 1.6692 43 1 6.8424 -0.6151 1.3134 44 1 9.0035 1.0367 3.2443 45 1 1.9614 -2.1345 -0.0141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070491541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:32 Heat of formation + Delta-G solvation = 167.553899 kcal Electronic energy + Delta-G solvation = -30256.020800 eV Core-core repulsion = 26120.503589 eV Total energy + Delta-G solvation = -4135.517212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.32108 -41.83485 -39.41460 -37.27398 -34.59359 -33.95820 -33.80941 -31.71675 -31.62011 -30.51479 -28.55297 -27.76236 -27.22237 -26.52411 -24.64332 -23.41352 -22.73352 -21.87947 -20.95106 -20.56054 -19.37677 -19.27141 -17.55737 -17.13672 -16.76039 -16.64974 -16.30032 -15.74451 -15.51350 -15.25423 -14.63562 -14.50433 -14.13414 -13.97879 -13.69991 -13.48033 -13.23902 -13.18987 -13.06310 -12.91941 -12.72049 -12.69839 -12.07563 -11.90434 -11.72012 -11.45797 -11.05181 -10.76831 -10.64328 -10.41742 -10.33313 -10.09088 -9.97552 -9.83351 -9.62118 -9.50272 -9.46840 -9.26027 -8.88210 -8.27548 -8.03715 -6.82258 -5.64321 -2.92677 1.51273 2.20020 2.25623 2.27964 2.94702 3.15238 3.47459 3.49696 3.54806 3.57327 3.64574 4.24974 4.31218 4.63120 4.65616 4.75334 4.76579 4.80474 4.98416 4.99982 5.01302 5.05791 5.21634 5.22787 5.36636 5.46430 5.72012 5.72842 5.90441 5.94779 5.99239 6.02440 6.16536 6.39873 6.41289 6.46838 6.52152 6.52841 6.63584 6.85753 7.04577 7.21338 7.40762 7.79890 7.84646 8.07145 8.44420 8.46565 8.52820 9.64477 10.21454 10.56551 11.58122 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.007262 B = 0.004298 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3854.980741 B = 6513.372237 C = 9778.538290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.469 5.469 3 C 0.176 3.824 4 N -0.470 5.470 5 C 0.040 3.960 6 C -0.029 4.029 7 H 0.097 0.903 8 C 0.121 3.879 9 N -0.594 5.594 10 C 0.632 3.368 11 O -0.536 6.536 12 C 0.153 3.847 13 N -0.464 5.464 14 C 0.188 3.812 15 N -0.310 5.310 16 C 0.088 3.912 17 N -0.260 5.260 18 C 0.071 3.929 19 C 0.182 3.818 20 H 0.063 0.937 21 N -0.708 5.708 22 C -0.234 4.234 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.929 5.929 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 C -0.067 4.067 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.201 0.799 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.225 0.775 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.387 0.613 44 H 0.253 0.747 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -12.659 -4.681 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.153 5.153 3 C -0.106 4.106 4 N -0.187 5.187 5 C -0.090 4.090 6 C -0.050 4.050 7 H 0.115 0.885 8 C -0.002 4.002 9 N -0.327 5.327 10 C 0.416 3.584 11 O -0.411 6.411 12 C -0.127 4.127 13 N -0.189 5.189 14 C -0.107 4.107 15 N -0.106 5.106 16 C -0.053 4.053 17 N -0.099 5.099 18 C -0.054 4.054 19 C 0.069 3.931 20 H 0.081 0.919 21 N -0.347 5.347 22 C -0.365 4.365 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.577 5.577 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.221 1.221 30 C -0.198 4.198 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.218 0.782 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.242 0.758 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.073 0.927 42 H 0.131 0.869 43 H 0.221 0.779 44 H 0.063 0.937 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.775 -12.263 -5.597 16.084 hybrid contribution -0.064 -0.367 1.320 1.371 sum -8.839 -12.630 -4.277 15.998 Atomic orbital electron populations 1.21958 0.77207 1.04396 1.03105 1.45359 1.07224 1.07128 1.55576 1.24985 0.85531 0.93447 1.06645 1.70234 1.18845 1.11597 1.18066 1.20189 0.92813 0.90378 1.05618 1.20814 0.94040 0.91910 0.98224 0.88472 1.22453 0.90683 0.88147 0.98950 1.48387 1.37666 1.33898 1.12702 1.15792 0.79021 0.78902 0.84688 1.90782 1.67664 1.68506 1.14181 1.23613 1.01400 0.98195 0.89477 1.71531 1.13970 1.20330 1.13040 1.26643 0.97497 0.92357 0.94242 1.47395 1.28485 1.28080 1.06625 1.22186 0.89834 0.87422 1.05871 1.74290 1.06319 1.12558 1.16776 1.23759 1.05331 0.97801 0.78489 1.21113 0.92165 0.88449 0.91324 0.91871 1.42411 1.33241 1.54280 1.04815 1.19239 1.10686 1.23379 0.83173 0.91183 1.24701 0.98539 1.00201 0.97225 1.69691 1.20551 1.35055 1.32403 0.86176 0.77389 0.77267 0.85704 1.20623 1.22067 1.22074 1.22358 0.90896 0.92336 1.14231 0.90922 0.89938 0.89709 0.78244 0.89728 0.90889 0.75840 0.89412 0.88397 0.88067 0.92719 0.86886 0.77872 0.93703 0.81157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.51 11.18 59.85 0.67 1.18 16 2 N -0.47 -5.61 3.15 -125.99 -0.40 -6.01 16 3 C 0.18 2.50 12.56 -90.37 -1.14 1.36 16 4 N -0.47 -8.87 11.25 -10.87 -0.12 -9.00 16 5 C 0.04 0.70 6.04 -82.85 -0.50 0.20 16 6 C -0.03 -0.53 3.30 -89.89 -0.30 -0.82 16 7 H 0.10 2.02 7.74 -51.93 -0.40 1.62 16 8 C 0.12 1.95 6.37 -2.13 -0.01 1.93 16 9 N -0.59 -10.88 3.29 -170.87 -0.56 -11.44 16 10 C 0.63 12.47 7.90 -12.32 -0.10 12.37 16 11 O -0.54 -11.57 17.29 5.33 0.09 -11.47 16 12 C 0.15 2.82 7.81 -156.35 -1.22 1.60 16 13 N -0.46 -7.93 8.57 -12.36 -0.11 -8.04 16 14 C 0.19 2.32 12.62 -90.49 -1.14 1.18 16 15 N -0.31 -3.70 3.72 -69.40 -0.26 -3.96 16 16 C 0.09 0.50 11.38 59.85 0.68 1.18 16 17 N -0.26 -4.32 12.08 32.08 0.39 -3.93 16 18 C 0.07 1.37 6.06 -2.98 -0.02 1.35 16 19 C 0.18 3.74 3.21 -66.56 -0.21 3.53 16 20 H 0.06 1.32 7.81 -51.93 -0.41 0.91 16 21 N -0.71 -18.13 5.08 -52.10 -0.26 -18.40 16 22 C -0.23 -6.50 9.97 -15.06 -0.15 -6.65 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 26 Si 0.90 22.62 29.55 -169.99 -5.02 17.59 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 30 C -0.07 -0.92 10.68 -16.56 -0.18 -1.10 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.20 2.05 8.06 -52.49 -0.42 1.63 16 35 H 0.08 1.36 7.85 -51.93 -0.41 0.96 16 36 H 0.07 0.98 6.39 -51.93 -0.33 0.65 16 37 H 0.23 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.11 2.46 5.91 -51.93 -0.31 2.15 16 43 H 0.39 10.86 7.54 -40.82 -0.31 10.55 16 44 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.17 1.86 6.90 -52.49 -0.36 1.50 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -40.61 382.33 -9.35 -49.96 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.87 Total: 9.96 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: -3.71 Total: 16.90 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -0.60 Total: -88.71 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.61 -9.35 -49.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070491541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.517 kcal (2) G-P(sol) polarization free energy of solvation -40.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 176.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds