Wall clock time and date at job start Wed Apr 1 2020 04:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35043 * 126.40189 * 2 1 4 4 N 1.30492 * 108.70560 * 180.02562 * 3 2 1 5 5 C 1.34129 * 109.25532 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.99191 * 180.02562 * 5 4 3 7 7 H 1.08999 * 110.30263 * 335.73856 * 6 5 4 8 8 C 1.54389 * 110.34539 * 213.56817 * 6 5 4 9 9 N 1.48145 * 104.62094 * 217.15703 * 8 6 5 10 10 C 1.34777 * 127.83833 * 219.58850 * 9 8 6 11 11 O 1.21283 * 119.99750 * 359.97438 * 10 9 8 12 12 C 1.50702 * 119.99928 * 180.27304 * 10 9 8 13 13 C 1.50700 * 109.46869 * 179.72354 * 12 10 9 14 14 N 1.33238 * 125.52859 * 90.00358 * 13 12 10 15 15 C 1.30832 * 109.82966 * 179.97438 * 14 13 12 16 16 N 1.34429 * 108.07876 * 359.97438 * 15 14 13 17 17 H 0.96989 * 126.82716 * 179.97438 * 16 15 14 18 18 N 1.30715 * 125.52152 * 269.69170 * 13 12 10 19 19 C 1.48144 * 104.32096 * 39.84078 * 9 8 6 20 20 C 1.54288 * 110.43599 * 97.97615 * 6 5 4 21 21 H 1.09004 * 110.34009 * 0.04585 * 20 6 5 22 22 N 1.46495 * 110.34660 * 237.89500 * 20 6 5 23 23 C 1.36932 * 120.00131 * 154.99545 * 22 20 6 24 24 H 1.07999 * 120.00433 * 0.02562 * 23 22 20 25 25 C 1.38820 * 119.99757 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00253 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99518 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47300 * 60.00031 * 27 25 23 29 29 H 1.48503 * 109.46773 * 179.97438 * 27 25 23 30 30 H 1.48493 * 109.47202 * 299.99508 * 27 25 23 31 31 C 1.34666 * 108.02262 * 0.25923 * 5 4 3 32 32 H 1.08994 * 109.47426 * 89.97534 * 1 2 3 33 33 H 1.09000 * 109.47075 * 209.97822 * 1 2 3 34 34 H 1.09002 * 109.47061 * 329.96968 * 1 2 3 35 35 H 1.08000 * 125.64618 * 0.02562 * 3 2 1 36 36 H 1.09001 * 110.40936 * 98.36340 * 8 6 5 37 37 H 1.09006 * 110.50337 * 335.98933 * 8 6 5 38 38 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 39 39 H 1.08994 * 109.46990 * 59.72065 * 12 10 9 40 40 H 1.07995 * 125.96134 * 179.97438 * 15 14 13 41 41 H 1.09005 * 110.40649 * 78.94812 * 19 9 8 42 42 H 1.08999 * 110.40810 * 201.36974 * 19 9 8 43 43 H 0.97006 * 119.99770 * 335.00577 * 22 20 6 44 44 H 0.97000 * 120.00124 * 180.02562 * 26 25 23 45 45 H 1.07996 * 126.59719 * 179.69771 * 31 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6903 -0.0006 5 6 3.5460 -0.6505 -0.0015 6 6 4.7890 -1.5026 -0.0018 7 1 5.6280 -0.9475 -0.4213 8 6 4.5499 -2.8004 -0.8032 9 7 5.2917 -3.8430 -0.0566 10 6 6.0203 -4.8593 -0.5592 11 8 6.1228 -4.9961 -1.7599 12 6 6.7021 -5.8297 0.3707 13 6 7.4395 -6.8661 -0.4375 14 7 8.7036 -6.7723 -0.8480 15 6 9.0311 -7.8432 -1.5245 16 7 7.9623 -8.6577 -1.5594 17 1 7.9059 -9.5247 -1.9905 18 7 6.9445 -8.0054 -0.8444 19 6 5.0458 -3.5186 1.3678 20 6 5.1196 -1.9737 1.4297 21 1 4.3823 -1.5896 2.1347 22 7 6.4644 -1.5364 1.8120 23 6 6.7821 -1.3755 3.1343 24 1 6.0413 -1.5714 3.8953 25 6 8.0564 -0.9607 3.4964 26 7 8.9590 -0.7215 2.5690 27 14 8.4898 -0.7419 5.3002 28 1 8.3177 -2.0343 6.0110 29 1 9.9013 -0.2960 5.4195 30 1 7.5953 0.2781 5.9041 31 6 2.2773 -1.1019 -0.0073 32 1 -0.3634 0.0004 -1.0276 33 1 -0.3633 -0.8902 0.5135 34 1 -0.3633 0.8897 0.5143 35 1 1.9335 2.1143 0.0004 36 1 4.9465 -2.7017 -1.8137 37 1 3.4868 -3.0393 -0.8347 38 1 7.4085 -5.2917 1.0030 39 1 5.9554 -6.3198 0.9955 40 1 9.9924 -8.0387 -1.9761 41 1 4.0587 -3.8670 1.6721 42 1 5.8170 -3.9624 1.9974 43 1 7.1299 -1.3607 1.1285 44 1 9.8495 -0.4319 2.8221 45 1 1.9613 -2.1345 -0.0141 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070552722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:36 Heat of formation + Delta-G solvation = 150.061453 kcal Electronic energy + Delta-G solvation = -29968.428154 eV Core-core repulsion = 25832.152413 eV Total energy + Delta-G solvation = -4136.275741 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.04907 -41.94479 -39.50309 -37.35560 -34.05843 -33.81092 -33.23380 -31.87461 -31.48250 -30.56788 -29.13136 -28.06628 -27.33079 -26.52873 -24.19846 -23.14789 -22.71367 -21.17844 -20.68745 -20.60354 -19.26914 -18.83084 -18.21748 -17.40238 -16.79086 -16.69352 -15.70116 -15.59476 -15.45330 -15.03327 -14.84126 -14.66369 -14.16679 -14.02817 -13.71230 -13.40713 -13.15592 -13.10655 -12.98233 -12.87670 -12.77117 -12.11830 -12.02525 -11.90549 -11.73226 -11.38841 -11.00978 -10.75960 -10.66348 -10.52965 -10.12822 -10.06286 -9.96330 -9.78321 -9.71610 -9.58648 -9.40234 -9.36242 -8.98346 -8.32339 -8.14301 -6.89219 -5.70116 -3.00084 1.62872 2.17112 2.64059 2.84146 2.86622 3.00427 3.35900 3.45038 3.48267 3.52815 3.54228 4.16763 4.55103 4.60416 4.67736 4.73668 4.89223 4.91177 4.92926 4.96871 5.15022 5.18310 5.34762 5.43582 5.53971 5.66183 5.68001 5.71504 5.80487 5.86410 5.91815 6.09158 6.22446 6.30707 6.32068 6.39967 6.46534 6.53250 6.61048 6.93236 7.00270 7.01953 7.30722 7.74285 7.94430 8.13407 8.33628 8.46708 8.50967 9.58342 10.14400 10.49177 11.51630 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.006859 B = 0.003988 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4081.250921 B = 7019.573170 C =10449.830925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.468 5.468 3 C 0.176 3.824 4 N -0.476 5.476 5 C 0.036 3.964 6 C -0.030 4.030 7 H 0.098 0.902 8 C 0.119 3.881 9 N -0.612 5.612 10 C 0.549 3.451 11 O -0.547 6.547 12 C -0.047 4.047 13 C 0.258 3.742 14 N -0.527 5.527 15 C 0.259 3.741 16 N -0.488 5.488 17 H 0.439 0.561 18 N -0.310 5.310 19 C 0.068 3.932 20 C 0.183 3.817 21 H 0.067 0.933 22 N -0.710 5.710 23 C -0.246 4.246 24 H 0.070 0.930 25 C -0.006 4.006 26 N -0.926 5.926 27 Si 0.904 3.096 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.287 1.287 31 C -0.064 4.064 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.201 0.799 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.130 0.870 39 H 0.114 0.886 40 H 0.222 0.778 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.387 0.613 44 H 0.256 0.744 45 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.061 -9.592 -7.256 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.153 5.153 3 C -0.106 4.106 4 N -0.194 5.194 5 C -0.094 4.094 6 C -0.052 4.052 7 H 0.116 0.884 8 C -0.004 4.004 9 N -0.345 5.345 10 C 0.337 3.663 11 O -0.425 6.425 12 C -0.089 4.089 13 C -0.025 4.025 14 N -0.254 5.254 15 C -0.040 4.040 16 N -0.207 5.207 17 H 0.284 0.716 18 N -0.140 5.140 19 C -0.058 4.058 20 C 0.070 3.930 21 H 0.085 0.915 22 N -0.349 5.349 23 C -0.377 4.377 24 H 0.088 0.912 25 C -0.203 4.203 26 N -0.573 5.573 27 Si 0.735 3.265 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.213 1.213 31 C -0.196 4.196 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.218 0.782 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.132 0.868 40 H 0.238 0.762 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.221 0.779 44 H 0.066 0.934 45 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -13.872 -9.099 -7.487 18.201 hybrid contribution -0.088 -0.860 0.427 0.964 sum -13.960 -9.959 -7.060 18.545 Atomic orbital electron populations 1.21970 0.77103 1.04449 1.03193 1.45370 1.07290 1.07136 1.55460 1.24983 0.85527 0.93485 1.06594 1.70232 1.18965 1.11728 1.18471 1.20334 0.93058 0.90315 1.05680 1.20711 0.94037 0.92661 0.97767 0.88370 1.22275 0.95568 0.86039 0.96532 1.48768 1.49345 1.27169 1.09233 1.19623 0.77837 0.80461 0.88398 1.90688 1.62175 1.73910 1.15735 1.19877 0.99884 0.92720 0.96443 1.23367 0.89604 0.92560 0.96968 1.70427 1.14454 1.23552 1.17013 1.26085 0.94551 0.86788 0.96569 1.48065 1.09622 1.19662 1.43311 0.71636 1.77939 1.11018 1.09872 1.15130 1.23763 1.00454 1.00702 0.80915 1.21135 0.89981 0.89787 0.92109 0.91502 1.42435 1.07610 1.79295 1.05588 1.19149 0.95865 1.38934 0.83730 0.91204 1.24729 0.96426 1.01951 0.97206 1.69656 1.04452 1.51862 1.31309 0.86322 0.77221 0.77807 0.85102 1.21277 1.21757 1.21345 1.22370 0.90876 0.92346 1.13960 0.90875 0.89868 0.89661 0.78191 0.90215 0.91486 0.85169 0.86785 0.76216 0.92085 0.89198 0.77876 0.93376 0.81106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.18 59.85 0.67 1.11 16 2 N -0.47 -5.13 3.15 -126.00 -0.40 -5.52 16 3 C 0.18 2.29 12.56 -90.38 -1.14 1.15 16 4 N -0.48 -8.40 11.25 -10.88 -0.12 -8.52 16 5 C 0.04 0.59 5.88 -82.85 -0.49 0.10 16 6 C -0.03 -0.54 3.34 -90.37 -0.30 -0.84 16 7 H 0.10 2.02 7.67 -51.93 -0.40 1.62 16 8 C 0.12 1.88 6.52 -2.41 -0.02 1.86 16 9 N -0.61 -10.25 3.31 -169.05 -0.56 -10.81 16 10 C 0.55 10.01 7.91 -10.98 -0.09 9.93 16 11 O -0.55 -11.71 16.30 5.55 0.09 -11.62 16 12 C -0.05 -0.75 5.30 -29.03 -0.15 -0.90 16 13 C 0.26 4.32 6.63 -156.85 -1.04 3.28 16 14 N -0.53 -8.68 11.19 -11.98 -0.13 -8.81 16 15 C 0.26 2.92 13.13 -90.65 -1.19 1.73 16 16 N -0.49 -5.29 7.45 29.53 0.22 -5.07 16 17 H 0.44 2.77 8.96 -182.34 -1.63 1.14 16 18 N -0.31 -4.75 12.80 32.42 0.41 -4.34 16 19 C 0.07 1.09 6.66 -2.20 -0.01 1.08 16 20 C 0.18 3.51 3.36 -66.32 -0.22 3.28 16 21 H 0.07 1.32 7.66 -51.93 -0.40 0.93 16 22 N -0.71 -17.37 5.14 -51.86 -0.27 -17.64 16 23 C -0.25 -6.61 9.96 -15.06 -0.15 -6.76 16 24 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 27 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 31 C -0.06 -0.82 10.55 -16.56 -0.17 -0.99 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.08 1.34 7.88 -51.93 -0.41 0.94 16 37 H 0.07 0.88 6.14 -51.93 -0.32 0.56 16 38 H 0.13 2.12 7.96 -51.93 -0.41 1.71 16 39 H 0.11 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.22 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.09 1.55 7.24 -51.93 -0.38 1.17 16 43 H 0.39 10.46 7.55 -40.82 -0.31 10.16 16 44 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.17 1.74 7.05 -52.49 -0.37 1.37 16 LS Contribution 384.08 15.07 5.79 5.79 Total: -1.00 -40.30 384.08 -10.80 -51.10 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.13 Total: 11.77 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: -4.40 Total: 13.76 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -0.12 Total: -87.97 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.30 -10.80 -51.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070552722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.157 kcal (2) G-P(sol) polarization free energy of solvation -40.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds