Wall clock time and date at job start Wed Apr 1 2020 04:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34587 * 125.74723 * 2 1 4 4 N 1.30866 * 107.62302 * 180.02562 * 3 2 1 5 5 C 1.34551 * 107.27066 * 359.97438 * 4 3 2 6 6 C 1.47872 * 126.04538 * 179.97438 * 5 4 3 7 7 O 1.21559 * 119.99361 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00527 * 0.03151 * 6 5 4 9 9 C 1.47019 * 125.64942 * 180.02562 * 8 6 5 10 10 C 1.54332 * 107.26924 * 178.99409 * 9 8 6 11 11 H 1.09002 * 110.71796 * 96.16733 * 10 9 8 12 12 C 1.50703 * 110.71690 * 219.43770 * 10 9 8 13 13 C 1.39868 * 126.03763 * 53.21731 * 12 10 9 14 14 N 1.30838 * 108.20161 * 179.80987 * 13 12 10 15 15 N 1.40078 * 108.20460 * 0.44273 * 14 13 12 16 16 C 1.46501 * 126.04075 * 179.73647 * 15 14 13 17 17 C 1.34956 * 107.92792 * 359.71162 * 15 14 13 18 18 C 1.55153 * 102.94085 * 337.80218 * 10 9 8 19 19 H 1.08996 * 111.00718 * 277.38850 * 18 10 9 20 20 N 1.46504 * 111.00169 * 153.57515 * 18 10 9 21 21 C 1.36943 * 119.99781 * 158.18143 * 20 18 10 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47469 * 125.62567 * 0.02562 * 8 6 5 30 30 N 1.28849 * 125.75006 * 180.32081 * 2 1 3 31 31 H 1.08999 * 109.47257 * 89.99358 * 1 2 3 32 32 H 1.09000 * 109.47406 * 209.99759 * 1 2 3 33 33 H 1.09005 * 109.47019 * 329.99617 * 1 2 3 34 34 H 1.08002 * 126.18753 * 0.02703 * 3 2 1 35 35 H 1.08996 * 109.88559 * 59.57824 * 9 8 6 36 36 H 1.09004 * 109.87877 * 298.40646 * 9 8 6 37 37 H 1.08008 * 125.89951 * 359.97438 * 13 12 10 38 38 H 1.09000 * 109.46959 * 269.97351 * 16 15 14 39 39 H 1.09000 * 109.46831 * 29.97299 * 16 15 14 40 40 H 1.08999 * 109.47055 * 149.97239 * 16 15 14 41 41 H 1.07997 * 126.13224 * 180.02562 * 17 15 14 42 42 H 0.97000 * 120.00410 * 338.18469 * 20 18 10 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08997 * 110.34970 * 85.23682 * 29 8 6 45 45 H 1.09006 * 110.40687 * 322.89513 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 -0.0006 5 6 3.4750 -0.6601 -0.0003 6 6 4.6575 -1.5480 -0.0013 7 8 4.5113 -2.7548 -0.0015 8 7 5.8972 -1.0193 -0.0019 9 6 7.1540 -1.7821 -0.0035 10 6 8.3102 -0.7601 -0.0295 11 1 8.6816 -0.5723 0.9779 12 6 9.4217 -1.2355 -0.9293 13 6 9.2871 -1.6343 -2.2632 14 7 10.4692 -1.9740 -2.7095 15 7 11.3930 -1.8116 -1.6691 16 6 12.8303 -2.0857 -1.7421 17 6 10.7254 -1.3574 -0.5878 18 6 7.6375 0.5107 -0.6124 19 1 7.5977 0.4675 -1.7008 20 7 8.3266 1.7228 -0.1627 21 6 8.2040 2.8849 -0.8766 22 1 7.5997 2.9078 -1.7714 23 6 8.8617 4.0319 -0.4537 24 7 9.5986 4.0039 0.6364 25 14 8.7007 5.6152 -1.4318 26 1 7.2730 6.0199 -1.4871 27 1 9.4930 6.6856 -0.7749 28 1 9.2075 5.3988 -2.8108 29 6 6.2171 0.4203 -0.0012 30 7 2.2178 -1.0457 -0.0059 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9163 2.1191 0.0004 35 1 7.2010 -2.4175 -0.8878 36 1 7.2186 -2.3919 0.8977 37 1 8.3668 -1.6554 -2.8281 38 1 13.0175 -3.1214 -1.4583 39 1 13.1807 -1.9191 -2.7607 40 1 13.3620 -1.4207 -1.0616 41 1 11.1546 -1.1314 0.3771 42 1 8.8698 1.7022 0.6407 43 1 10.0578 4.8055 0.9321 44 1 6.2173 0.8080 1.0175 45 1 5.5037 0.9685 -0.6166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086977726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:53 Heat of formation + Delta-G solvation = 176.759982 kcal Electronic energy + Delta-G solvation = -30124.567374 eV Core-core repulsion = 25989.449369 eV Total energy + Delta-G solvation = -4135.118006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.41671 -40.96528 -39.42483 -37.26282 -34.68022 -33.95596 -33.24779 -31.78514 -31.70216 -30.58819 -29.01955 -27.81738 -27.30690 -26.13052 -24.45539 -23.47819 -22.60021 -21.79120 -21.08688 -20.35939 -19.53416 -19.27195 -17.52243 -17.25143 -16.83029 -16.52918 -16.12970 -15.88250 -15.39770 -15.16309 -14.65459 -14.46394 -14.11346 -13.98774 -13.55568 -13.40049 -13.28529 -13.15772 -12.83861 -12.66415 -12.61623 -12.52358 -12.21810 -12.04201 -11.85015 -11.47576 -11.09460 -10.80519 -10.78244 -10.54341 -10.41059 -10.19097 -10.11262 -10.05950 -9.92413 -9.66625 -9.56059 -9.09526 -8.93699 -8.24580 -7.95212 -6.95429 -5.76168 -3.04525 1.43199 2.11838 2.17445 2.21124 2.79154 3.06660 3.21415 3.45278 3.49791 3.50600 3.57016 4.16868 4.23202 4.57623 4.68746 4.69619 4.71236 4.92105 4.98501 5.11101 5.19392 5.24964 5.28191 5.38099 5.43820 5.53621 5.64831 5.78050 5.91920 5.94744 5.96387 6.06033 6.13768 6.25012 6.31863 6.38840 6.50026 6.59375 6.63582 6.84885 6.99171 7.02514 7.29687 7.72635 7.77258 7.99625 7.99920 8.39866 8.42817 9.53948 10.08405 10.43794 11.46179 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.007610 B = 0.004023 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3678.338545 B = 6958.854814 C =10087.907998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.310 5.310 3 C 0.187 3.813 4 N -0.467 5.467 5 C 0.153 3.847 6 C 0.624 3.376 7 O -0.535 6.535 8 N -0.593 5.593 9 C 0.124 3.876 10 C -0.032 4.032 11 H 0.090 0.910 12 C -0.204 4.204 13 C 0.059 3.941 14 N -0.304 5.304 15 N -0.382 5.382 16 C 0.106 3.894 17 C 0.064 3.936 18 C 0.182 3.818 19 H 0.066 0.934 20 N -0.706 5.706 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.009 4.009 24 N -0.933 5.933 25 Si 0.904 3.096 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.287 1.287 29 C 0.075 3.925 30 N -0.260 5.260 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.226 0.774 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.178 0.822 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.172 0.828 42 H 0.386 0.614 43 H 0.255 0.745 44 H 0.070 0.930 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.549 -8.978 0.009 13.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.106 5.106 3 C -0.108 4.108 4 N -0.192 5.192 5 C -0.127 4.127 6 C 0.408 3.592 7 O -0.410 6.410 8 N -0.325 5.325 9 C 0.002 3.998 10 C -0.053 4.053 11 H 0.108 0.892 12 C -0.215 4.215 13 C -0.128 4.128 14 N -0.126 5.126 15 N -0.164 5.164 16 C -0.036 4.036 17 C -0.082 4.082 18 C 0.069 3.931 19 H 0.084 0.916 20 N -0.345 5.345 21 C -0.367 4.367 22 H 0.089 0.911 23 C -0.205 4.205 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.214 1.214 29 C -0.050 4.050 30 N -0.099 5.099 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.242 0.758 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.195 0.805 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.189 0.811 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.740 -10.418 -1.121 13.645 hybrid contribution -0.689 1.781 0.539 1.985 sum -9.429 -8.637 -0.582 12.800 Atomic orbital electron populations 1.22198 0.72590 1.05766 1.04804 1.47413 1.09146 1.03997 1.50007 1.26666 0.86031 0.95946 1.02173 1.71567 1.19548 1.09229 1.18860 1.23672 0.91853 0.89557 1.07642 1.15870 0.80197 0.85304 0.77859 1.90793 1.85340 1.13517 1.51395 1.48185 1.03827 1.10213 1.70321 1.21996 0.81673 0.94110 1.02063 1.20776 0.91070 0.95063 0.98439 0.89195 1.19652 0.93983 1.12246 0.95636 1.23651 0.96112 0.98485 0.94517 1.77269 0.98627 1.25343 1.11316 1.48309 1.07680 1.51929 1.08524 1.21759 0.75673 1.01728 1.04425 1.22259 0.92701 0.99893 0.93322 1.21401 0.88744 0.85883 0.97042 0.91592 1.42195 1.56385 1.05143 1.30763 1.19188 1.24423 0.87490 1.05602 0.91132 1.24682 1.00028 0.97933 0.97873 1.69638 1.35639 1.28427 1.24375 0.86312 0.77407 0.83479 0.79259 1.21212 1.21822 1.21374 1.23770 1.00474 0.78001 1.02741 1.74302 1.02909 1.13233 1.19452 0.89311 0.88390 0.88075 0.75810 0.91070 0.91487 0.80542 0.91250 0.89676 0.89627 0.81116 0.77989 0.93541 0.91208 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.38 59.85 0.68 1.09 16 2 N -0.31 -3.33 3.72 -69.39 -0.26 -3.59 16 3 C 0.19 2.06 12.62 -90.48 -1.14 0.92 16 4 N -0.47 -7.33 8.47 -12.36 -0.10 -7.44 16 5 C 0.15 2.62 7.79 -156.36 -1.22 1.40 16 6 C 0.62 11.63 7.86 -12.32 -0.10 11.54 16 7 O -0.54 -11.10 17.41 5.31 0.09 -11.01 16 8 N -0.59 -10.29 3.33 -171.59 -0.57 -10.87 16 9 C 0.12 1.95 6.42 -3.06 -0.02 1.93 16 10 C -0.03 -0.52 3.00 -89.93 -0.27 -0.79 16 11 H 0.09 1.43 7.99 -51.93 -0.41 1.01 16 12 C -0.20 -3.26 4.95 -105.05 -0.52 -3.78 16 13 C 0.06 0.95 10.73 -17.36 -0.19 0.77 16 14 N -0.30 -5.13 12.58 30.63 0.39 -4.74 16 15 N -0.38 -5.61 4.01 -68.16 -0.27 -5.88 16 16 C 0.11 1.05 11.47 59.85 0.69 1.73 16 17 C 0.06 0.94 11.40 -17.22 -0.20 0.75 16 18 C 0.18 3.49 3.12 -65.79 -0.21 3.28 16 19 H 0.07 1.33 7.66 -51.93 -0.40 0.93 16 20 N -0.71 -16.60 5.26 -51.36 -0.27 -16.87 16 21 C -0.24 -6.26 9.97 -15.06 -0.15 -6.41 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 25 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 C 0.08 1.38 5.83 -2.51 -0.01 1.37 16 30 N -0.26 -4.02 12.08 32.07 0.39 -3.63 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.23 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.07 1.10 7.21 -51.93 -0.37 0.72 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.18 2.58 8.06 -52.48 -0.42 2.16 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.17 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.39 9.60 7.73 -40.82 -0.32 9.29 16 43 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.10 1.83 6.15 -51.93 -0.32 1.52 16 LS Contribution 385.04 15.07 5.80 5.80 Total: -1.00 -37.58 385.04 -7.88 -45.45 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -6.02 Total: 8.78 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: -2.75 Total: 13.44 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: 0.02 Total: -79.34 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.58 -7.88 -45.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.211 kcal (2) G-P(sol) polarization free energy of solvation -37.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 184.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 176.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds