Wall clock time and date at job start Wed Apr 1 2020 04:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34587 * 125.74723 * 2 1 4 4 N 1.30866 * 107.62302 * 180.02562 * 3 2 1 5 5 C 1.34551 * 107.27066 * 359.97438 * 4 3 2 6 6 C 1.47872 * 126.04538 * 179.97438 * 5 4 3 7 7 O 1.21559 * 119.99361 * 180.02562 * 6 5 4 8 8 N 1.34773 * 120.00527 * 0.03151 * 6 5 4 9 9 C 1.47019 * 125.64942 * 180.02562 * 8 6 5 10 10 C 1.54332 * 107.26924 * 178.99409 * 9 8 6 11 11 H 1.09002 * 110.71796 * 96.16733 * 10 9 8 12 12 C 1.50703 * 110.71690 * 219.43770 * 10 9 8 13 13 C 1.39868 * 126.03763 * 53.21731 * 12 10 9 14 14 N 1.30838 * 108.20161 * 179.80987 * 13 12 10 15 15 N 1.40078 * 108.20460 * 0.44273 * 14 13 12 16 16 C 1.46501 * 126.04075 * 179.73647 * 15 14 13 17 17 C 1.34956 * 107.92792 * 359.71162 * 15 14 13 18 18 C 1.55153 * 102.94085 * 337.80218 * 10 9 8 19 19 H 1.08996 * 111.00718 * 277.38850 * 18 10 9 20 20 N 1.46504 * 111.00169 * 153.57515 * 18 10 9 21 21 C 1.36943 * 119.99781 * 158.18143 * 20 18 10 22 22 H 1.08002 * 119.99788 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99622 * 180.27904 * 21 20 18 24 24 N 1.31614 * 120.00467 * 359.72375 * 23 21 20 25 25 Si 1.86801 * 119.99700 * 179.72266 * 23 21 20 26 26 H 1.48496 * 109.47031 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47267 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47169 * 300.00118 * 25 23 21 29 29 C 1.47469 * 125.62567 * 0.02562 * 8 6 5 30 30 N 1.28849 * 125.75006 * 180.32081 * 2 1 3 31 31 H 1.08999 * 109.47257 * 89.99358 * 1 2 3 32 32 H 1.09000 * 109.47406 * 209.99759 * 1 2 3 33 33 H 1.09005 * 109.47019 * 329.99617 * 1 2 3 34 34 H 1.08002 * 126.18753 * 0.02703 * 3 2 1 35 35 H 1.08996 * 109.88559 * 59.57824 * 9 8 6 36 36 H 1.09004 * 109.87877 * 298.40646 * 9 8 6 37 37 H 1.08008 * 125.89951 * 359.97438 * 13 12 10 38 38 H 1.09000 * 109.46959 * 269.97351 * 16 15 14 39 39 H 1.09000 * 109.46831 * 29.97299 * 16 15 14 40 40 H 1.08999 * 109.47055 * 149.97239 * 16 15 14 41 41 H 1.07997 * 126.13224 * 180.02562 * 17 15 14 42 42 H 0.97000 * 120.00410 * 338.18469 * 20 18 10 43 43 H 0.96995 * 120.00147 * 180.02562 * 24 23 21 44 44 H 1.08997 * 110.34970 * 85.23682 * 29 8 6 45 45 H 1.09006 * 110.40687 * 322.89513 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0923 0.0000 4 7 3.4950 0.6852 -0.0006 5 6 3.4750 -0.6601 -0.0003 6 6 4.6575 -1.5480 -0.0013 7 8 4.5113 -2.7548 -0.0015 8 7 5.8972 -1.0193 -0.0019 9 6 7.1540 -1.7821 -0.0035 10 6 8.3102 -0.7601 -0.0295 11 1 8.6816 -0.5723 0.9779 12 6 9.4217 -1.2355 -0.9293 13 6 9.2871 -1.6343 -2.2632 14 7 10.4692 -1.9740 -2.7095 15 7 11.3930 -1.8116 -1.6691 16 6 12.8303 -2.0857 -1.7421 17 6 10.7254 -1.3574 -0.5878 18 6 7.6375 0.5107 -0.6124 19 1 7.5977 0.4675 -1.7008 20 7 8.3266 1.7228 -0.1627 21 6 8.2040 2.8849 -0.8766 22 1 7.5997 2.9078 -1.7714 23 6 8.8617 4.0319 -0.4537 24 7 9.5986 4.0039 0.6364 25 14 8.7007 5.6152 -1.4318 26 1 7.2730 6.0199 -1.4871 27 1 9.4930 6.6856 -0.7749 28 1 9.2075 5.3988 -2.8108 29 6 6.2171 0.4203 -0.0012 30 7 2.2178 -1.0457 -0.0059 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.9163 2.1191 0.0004 35 1 7.2010 -2.4175 -0.8878 36 1 7.2186 -2.3919 0.8977 37 1 8.3668 -1.6554 -2.8281 38 1 13.0175 -3.1214 -1.4583 39 1 13.1807 -1.9191 -2.7607 40 1 13.3620 -1.4207 -1.0616 41 1 11.1546 -1.1314 0.3771 42 1 8.8698 1.7022 0.6407 43 1 10.0578 4.8055 0.9321 44 1 6.2173 0.8080 1.0175 45 1 5.5037 0.9685 -0.6166 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086977726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:52 Heat of formation + Delta-G solvation = 151.164924 kcal Electronic energy + Delta-G solvation = -30125.677260 eV Core-core repulsion = 25989.449369 eV Total energy + Delta-G solvation = -4136.227891 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.41092 -42.16921 -40.83008 -38.75042 -35.85162 -35.51713 -34.39501 -33.24208 -32.74915 -32.23559 -30.19670 -29.01256 -28.57997 -27.14025 -25.97023 -25.05490 -23.70584 -22.84468 -22.43966 -21.65860 -20.77840 -20.61196 -19.12605 -18.63544 -17.85786 -17.68879 -17.35939 -17.12823 -16.76298 -16.26388 -16.15386 -15.71382 -15.41380 -15.31227 -15.03721 -14.66752 -14.32056 -14.07315 -14.06303 -13.93795 -13.76541 -13.58082 -13.43837 -13.27213 -13.04965 -12.83411 -12.78530 -12.55430 -12.32908 -12.15946 -11.81660 -11.73122 -11.44628 -11.42219 -11.39429 -11.24969 -10.86169 -10.54831 -10.25971 -9.68168 -9.24643 -8.85697 -7.85328 -5.12450 0.29996 1.03392 1.15385 1.30115 1.53360 1.54746 1.60327 1.77690 1.84843 1.99234 2.25500 2.62946 3.04835 3.42069 3.46470 3.59699 3.81554 3.91022 3.99109 4.09783 4.17721 4.29467 4.36001 4.39501 4.42253 4.48835 4.49528 4.59523 4.65366 4.70060 4.72425 4.77168 4.86681 4.88344 5.10654 5.17382 5.25003 5.27202 5.42312 5.48875 5.63103 5.71032 5.76338 6.22758 6.33496 6.36716 6.79956 6.82639 7.13859 7.44245 8.15335 8.41931 9.37256 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.007610 B = 0.004023 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3678.338545 B = 6958.854814 C =10087.907998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.298 5.298 3 C 0.200 3.800 4 N -0.506 5.506 5 C 0.120 3.880 6 C 0.620 3.380 7 O -0.565 6.565 8 N -0.590 5.590 9 C 0.126 3.874 10 C -0.013 4.013 11 H 0.095 0.905 12 C -0.225 4.225 13 C 0.047 3.953 14 N -0.331 5.331 15 N -0.381 5.381 16 C 0.095 3.905 17 C 0.066 3.934 18 C 0.181 3.819 19 H 0.056 0.944 20 N -0.711 5.711 21 C -0.232 4.232 22 H 0.071 0.929 23 C -0.064 4.064 24 N -0.964 5.964 25 Si 0.961 3.039 26 H -0.277 1.277 27 H -0.297 1.297 28 H -0.286 1.286 29 C 0.097 3.903 30 N -0.280 5.280 31 H 0.107 0.893 32 H 0.099 0.901 33 H 0.142 0.858 34 H 0.275 0.725 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.183 0.817 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.198 0.802 42 H 0.378 0.622 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 -8.401 -0.037 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.094 5.094 3 C -0.094 4.094 4 N -0.232 5.232 5 C -0.158 4.158 6 C 0.405 3.595 7 O -0.443 6.443 8 N -0.322 5.322 9 C 0.004 3.996 10 C -0.034 4.034 11 H 0.113 0.887 12 C -0.237 4.237 13 C -0.138 4.138 14 N -0.154 5.154 15 N -0.164 5.164 16 C -0.045 4.045 17 C -0.081 4.081 18 C 0.070 3.930 19 H 0.074 0.926 20 N -0.350 5.350 21 C -0.364 4.364 22 H 0.089 0.911 23 C -0.257 4.257 24 N -0.614 5.614 25 Si 0.791 3.209 26 H -0.203 1.203 27 H -0.224 1.224 28 H -0.212 1.212 29 C -0.029 4.029 30 N -0.121 5.121 31 H 0.125 0.875 32 H 0.117 0.883 33 H 0.160 0.840 34 H 0.290 0.710 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.200 0.800 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.215 0.785 42 H 0.211 0.789 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.845 -9.870 -1.199 13.992 hybrid contribution -0.473 1.557 0.534 1.713 sum -10.318 -8.313 -0.665 13.267 Atomic orbital electron populations 1.22766 0.68994 1.07903 1.06701 1.47859 1.10890 1.02871 1.47746 1.27515 0.84733 0.97594 0.99556 1.71457 1.22521 1.08641 1.20579 1.23357 0.91868 0.90142 1.10463 1.16167 0.80866 0.85297 0.77137 1.90753 1.85871 1.14735 1.52942 1.48158 1.04232 1.09787 1.70019 1.22061 0.80815 0.93973 1.02731 1.20560 0.91174 0.93246 0.98451 0.88691 1.19695 0.94567 1.13728 0.95661 1.23820 0.96440 0.98664 0.94882 1.77205 0.99191 1.26321 1.12643 1.48708 1.09001 1.50811 1.07832 1.22147 0.73240 1.03722 1.05368 1.22703 0.92452 0.98617 0.94285 1.21438 0.89246 0.85797 0.96504 0.92611 1.42230 1.56748 1.05719 1.30299 1.19478 1.23183 0.88460 1.05300 0.91092 1.25333 1.00639 1.00665 0.99041 1.69772 1.37031 1.28697 1.25932 0.85399 0.77523 0.80123 0.77840 1.20288 1.22387 1.21231 1.23341 0.99447 0.78547 1.01543 1.74207 1.02803 1.15432 1.19696 0.87463 0.88262 0.84029 0.70974 0.90814 0.90406 0.80034 0.89029 0.89423 0.87489 0.78544 0.78872 0.94188 0.92492 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 11.38 127.77 1.45 1.90 16 2 N -0.30 -5.78 3.72 -373.45 -1.39 -7.17 16 3 C 0.20 3.94 12.62 180.30 2.27 6.22 16 4 N -0.51 -15.62 8.47 -193.03 -1.63 -17.25 16 5 C 0.12 4.16 7.79 137.13 1.07 5.23 16 6 C 0.62 23.70 7.86 86.80 0.68 24.38 16 7 O -0.57 -24.09 17.41 -3.90 -0.07 -24.16 16 8 N -0.59 -20.88 3.33 -815.05 -2.71 -23.59 16 9 C 0.13 3.98 6.42 86.73 0.56 4.54 16 10 C -0.01 -0.43 3.00 -10.35 -0.03 -0.46 16 11 H 0.09 2.97 7.99 -2.39 -0.02 2.95 16 12 C -0.22 -7.13 4.95 -20.14 -0.10 -7.23 16 13 C 0.05 1.54 10.73 85.24 0.91 2.46 16 14 N -0.33 -11.06 12.58 -57.02 -0.72 -11.78 16 15 N -0.38 -10.70 4.01 -369.56 -1.48 -12.18 16 16 C 0.10 1.68 11.47 127.77 1.47 3.15 16 17 C 0.07 1.88 11.40 83.54 0.95 2.83 16 18 C 0.18 7.03 3.12 46.38 0.14 7.17 16 19 H 0.06 2.29 7.66 -2.39 -0.02 2.27 16 20 N -0.71 -33.73 5.26 -316.39 -1.66 -35.39 16 21 C -0.23 -12.35 9.97 84.03 0.84 -11.51 16 22 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 23 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 24 N -0.96 -56.28 13.06 21.65 0.28 -56.00 16 25 Si 0.96 44.96 29.55 68.60 2.03 46.98 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 28 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 29 C 0.10 3.60 5.83 86.84 0.51 4.11 16 30 N -0.28 -8.52 12.08 -52.44 -0.63 -9.16 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.14 -0.26 8.14 -2.38 -0.02 -0.28 16 34 H 0.27 2.12 8.06 -2.91 -0.02 2.10 16 35 H 0.07 2.30 7.21 -2.39 -0.02 2.28 16 36 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.18 5.46 8.06 -2.91 -0.02 5.43 16 38 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.20 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.38 19.01 7.73 -92.71 -0.72 18.30 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.09 3.44 6.15 -2.38 -0.01 3.42 16 Total: -1.00 -83.38 385.04 3.52 -79.86 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.32 Total: 30.11 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 11.19 Total: 39.72 kcal Atomic # 7 Polarization: -162.57 SS G_CDS: -9.95 Total: -172.52 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.07 Total: -24.16 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -83.38 3.52 -79.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.025 kcal (2) G-P(sol) polarization free energy of solvation -83.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds