Wall clock time and date at job start Wed Apr 1 2020 04:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34949 * 126.03211 * 2 1 4 4 C 1.35324 * 107.74352 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.03728 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.64404 * 359.29573 * 5 4 3 7 7 C 1.54322 * 110.71875 * 236.15366 * 5 4 3 8 8 N 1.47018 * 107.27336 * 219.26911 * 7 5 4 9 9 C 1.34780 * 125.64824 * 178.90717 * 8 7 5 10 10 O 1.21593 * 120.00071 * 0.02562 * 9 8 7 11 11 C 1.47525 * 119.99776 * 179.97438 * 9 8 7 12 12 C 1.36596 * 125.76822 * 179.97438 * 11 9 8 13 13 N 1.34813 * 106.83609 * 179.97438 * 12 11 9 14 14 C 1.46505 * 126.59157 * 180.02562 * 13 12 11 15 15 N 1.40209 * 106.81346 * 359.97438 * 13 12 11 16 16 N 1.28758 * 108.36852 * 359.75270 * 15 13 12 17 17 C 1.47426 * 108.70104 * 358.94171 * 8 7 5 18 18 C 1.54909 * 104.83381 * 24.12870 * 17 8 7 19 19 H 1.08997 * 111.00194 * 81.06198 * 18 17 8 20 20 N 1.46502 * 111.00219 * 204.91950 * 18 17 8 21 21 C 1.36938 * 119.99398 * 267.19274 * 20 18 17 22 22 H 1.07995 * 120.00300 * 0.02562 * 21 20 18 23 23 C 1.38820 * 119.99492 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99600 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99999 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47472 * 89.99760 * 25 23 21 27 27 H 1.48505 * 109.46637 * 209.99425 * 25 23 21 28 28 H 1.48498 * 109.47378 * 329.99347 * 25 23 21 29 29 C 1.39869 * 107.91937 * 0.25876 * 4 3 2 30 30 N 1.30837 * 108.20225 * 359.55794 * 29 4 3 31 31 H 1.09002 * 109.47258 * 90.00716 * 1 2 3 32 32 H 1.09007 * 109.47094 * 209.99972 * 1 2 3 33 33 H 1.09003 * 109.47547 * 330.00070 * 1 2 3 34 34 H 1.07994 * 126.12915 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.88021 * 338.68615 * 7 5 4 36 36 H 1.09005 * 109.88017 * 99.69303 * 7 5 4 37 37 H 1.07991 * 126.58126 * 359.95610 * 12 11 9 38 38 H 1.09005 * 109.46897 * 89.99817 * 14 13 12 39 39 H 1.08998 * 109.46977 * 209.99812 * 14 13 12 40 40 H 1.08998 * 109.47369 * 329.99865 * 14 13 12 41 41 H 1.08998 * 110.36876 * 142.97187 * 17 8 7 42 42 H 1.09009 * 110.36320 * 265.17860 * 17 8 7 43 43 H 0.96998 * 120.00124 * 87.19913 * 20 18 17 44 44 H 0.97004 * 119.99508 * 180.02562 * 24 23 21 45 45 H 1.07999 * 125.89747 * 179.74111 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0013 6 1 4.4852 2.5982 -0.0139 7 6 5.6796 1.2106 -1.2005 8 7 7.0692 1.2833 -0.7261 9 6 8.1667 1.0362 -1.4685 10 8 8.0518 0.7227 -2.6377 11 6 9.5073 1.1473 -0.8628 12 6 10.6934 0.9241 -1.5025 13 7 11.6704 1.1325 -0.5973 14 6 13.1126 1.0122 -0.8255 15 7 11.0411 1.4876 0.6043 16 7 9.7683 1.4917 0.4099 17 6 7.0634 1.6704 0.6964 18 6 5.6723 1.2345 1.2204 19 1 5.6593 0.1702 1.4552 20 7 5.2759 2.0318 2.3837 21 6 5.5580 1.5861 3.6474 22 1 6.0730 0.6470 3.7864 23 6 5.1828 2.3418 4.7498 24 7 5.4535 1.9132 5.9644 25 14 4.2927 3.9664 4.5092 26 1 2.8270 3.7289 4.4849 27 1 4.6269 4.8842 5.6278 28 1 4.7166 4.5775 3.2240 29 6 3.5347 -0.7320 -0.0070 30 7 2.2892 -1.1327 -0.0005 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.9279 2.1193 -0.0004 35 1 5.4632 0.2051 -1.5613 36 1 5.5203 1.9336 -2.0006 37 1 10.8235 0.6359 -2.5350 38 1 13.5100 1.9729 -1.1531 39 1 13.6032 0.7127 0.1005 40 1 13.2975 0.2615 -1.5939 41 1 7.8530 1.1468 1.2353 42 1 7.1876 2.7488 0.7966 43 1 4.8136 2.8753 2.2588 44 1 5.1910 2.4411 6.7347 45 1 4.4054 -1.3708 -0.0129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086977999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:45 Heat of formation + Delta-G solvation = 182.883706 kcal Electronic energy + Delta-G solvation = -30139.111103 eV Core-core repulsion = 26004.258642 eV Total energy + Delta-G solvation = -4134.852461 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.19920 -41.05393 -39.45161 -37.38382 -34.78882 -34.07630 -33.33592 -31.87575 -31.05331 -30.77775 -28.98017 -27.99577 -27.60959 -26.22245 -24.33974 -23.11923 -22.34593 -22.01196 -21.17410 -20.37257 -19.67029 -19.44696 -17.68982 -17.47425 -16.58593 -16.35374 -16.14063 -15.80531 -15.29546 -15.24437 -14.62853 -14.48527 -14.21715 -14.02732 -13.66910 -13.46199 -13.42162 -13.11009 -12.99295 -12.71617 -12.70381 -12.55261 -12.39257 -12.20718 -12.01752 -11.74463 -11.36560 -11.11336 -10.87944 -10.69632 -10.57727 -10.43749 -10.25262 -10.00445 -9.97708 -9.55516 -9.32477 -9.18148 -8.97335 -8.32261 -8.05957 -7.24806 -5.73422 -3.09679 1.08102 1.79865 1.95721 2.11236 2.70736 3.01282 3.20416 3.38633 3.40345 3.42563 3.47051 4.17964 4.23285 4.59563 4.61455 4.61958 4.67520 4.86419 4.95845 4.97902 5.09395 5.13295 5.17256 5.25089 5.30770 5.36611 5.42527 5.56024 5.63400 5.67961 5.82113 5.85231 5.89440 5.98932 6.09228 6.22471 6.34340 6.45895 6.53656 6.71616 6.88285 6.89934 7.19946 7.72830 7.91779 7.94097 8.02312 8.32266 8.45089 9.22201 9.94032 10.12297 11.44783 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008499 B = 0.003906 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.718077 B = 7165.868095 C = 9815.228137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 C 0.058 3.942 4 C -0.205 4.205 5 C -0.037 4.037 6 H 0.086 0.914 7 C 0.124 3.876 8 N -0.597 5.597 9 C 0.615 3.385 10 O -0.554 6.554 11 C -0.094 4.094 12 C 0.087 3.913 13 N -0.369 5.369 14 C 0.089 3.911 15 N -0.065 5.065 16 N -0.188 5.188 17 C 0.074 3.926 18 C 0.188 3.812 19 H 0.077 0.923 20 N -0.730 5.730 21 C -0.241 4.241 22 H 0.092 0.908 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.881 3.119 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.276 1.276 29 C 0.062 3.938 30 N -0.301 5.301 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.170 0.830 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.203 0.797 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.069 0.931 43 H 0.363 0.637 44 H 0.259 0.741 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 -1.248 -18.643 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.164 5.164 3 C -0.087 4.087 4 C -0.216 4.216 5 C -0.058 4.058 6 H 0.105 0.895 7 C 0.001 3.999 8 N -0.329 5.329 9 C 0.401 3.599 10 O -0.432 6.432 11 C -0.233 4.233 12 C -0.070 4.070 13 N -0.153 5.153 14 C -0.052 4.052 15 N -0.045 5.045 16 N -0.062 5.062 17 C -0.052 4.052 18 C 0.076 3.924 19 H 0.095 0.905 20 N -0.371 5.371 21 C -0.371 4.371 22 H 0.110 0.890 23 C -0.188 4.188 24 N -0.579 5.579 25 Si 0.712 3.288 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.202 1.202 29 C -0.125 4.125 30 N -0.122 5.122 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.187 0.813 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.220 0.780 38 H 0.106 0.894 39 H 0.119 0.881 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.196 0.804 44 H 0.069 0.931 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.220 -2.169 -17.587 18.215 hybrid contribution 0.005 1.778 -0.908 1.996 sum 4.225 -0.392 -18.495 18.975 Atomic orbital electron populations 1.21769 0.74707 1.04370 1.02787 1.48321 1.06331 1.03928 1.57795 1.22227 0.90845 0.93167 1.02492 1.19651 0.93434 0.93565 1.14976 1.20825 0.91355 0.98282 0.95341 0.89523 1.21949 0.79631 1.01987 0.96368 1.48244 1.05246 1.66098 1.13268 1.16361 0.81482 0.77418 0.84602 1.90772 1.86291 1.50468 1.15716 1.21427 0.95219 1.15001 0.91675 1.23282 0.87396 0.98783 0.97543 1.50439 1.08555 1.46954 1.09390 1.22156 0.74188 1.04145 1.04751 1.82123 0.99701 1.20498 1.02214 1.74892 1.06848 1.09917 1.14525 1.23675 1.02396 1.00965 0.78133 1.21355 0.89079 0.96409 0.85563 0.90471 1.42559 1.69490 1.23096 1.01916 1.19074 1.31742 1.05248 0.81035 0.88987 1.24635 1.00842 0.98208 0.95068 1.69701 1.52064 1.39109 0.97043 0.86597 0.79930 0.85211 0.77076 1.21296 1.21829 1.20192 1.23671 0.94970 0.94614 0.99205 1.77300 1.01685 1.08243 1.24959 0.91184 0.89534 0.89714 0.81300 0.90987 0.91554 0.78021 0.89373 0.88084 0.88579 0.88633 0.91290 0.80418 0.93106 0.80366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.97 11.47 59.84 0.69 1.66 16 2 N -0.38 -5.33 4.01 -68.16 -0.27 -5.60 16 3 C 0.06 0.80 11.40 -17.22 -0.20 0.61 16 4 C -0.20 -3.10 4.95 -105.05 -0.52 -3.62 16 5 C -0.04 -0.56 3.00 -89.94 -0.27 -0.83 16 6 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 7 C 0.12 1.79 6.43 -3.07 -0.02 1.77 16 8 N -0.60 -9.62 3.33 -171.75 -0.57 -10.19 16 9 C 0.61 10.00 7.85 -12.47 -0.10 9.91 16 10 O -0.55 -9.69 17.19 5.28 0.09 -9.60 16 11 C -0.09 -1.40 6.84 -83.55 -0.57 -1.97 16 12 C 0.09 0.94 11.31 -16.84 -0.19 0.75 16 13 N -0.37 -3.81 4.03 -67.85 -0.27 -4.08 16 14 C 0.09 0.40 11.51 59.85 0.69 1.09 16 15 N -0.06 -0.97 13.78 60.35 0.83 -0.14 16 16 N -0.19 -3.15 9.40 32.85 0.31 -2.84 16 17 C 0.07 1.32 5.81 -2.53 -0.01 1.30 16 18 C 0.19 3.50 3.14 -65.78 -0.21 3.29 16 19 H 0.08 1.53 7.59 -51.93 -0.39 1.13 16 20 N -0.73 -16.49 5.05 -51.35 -0.26 -16.75 16 21 C -0.24 -6.63 10.44 -15.06 -0.16 -6.79 16 22 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 23 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 24 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 25 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.31 6.52 56.52 0.37 -5.95 16 29 C 0.06 0.97 10.76 -17.37 -0.19 0.78 16 30 N -0.30 -4.91 12.58 30.62 0.39 -4.52 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.07 1.03 7.29 -51.93 -0.38 0.65 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.20 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.10 1.86 6.15 -51.93 -0.32 1.54 16 42 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 43 H 0.36 8.01 5.62 -40.82 -0.23 7.78 16 44 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 45 H 0.18 2.51 8.06 -52.49 -0.42 2.09 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -37.94 382.53 -5.06 -43.00 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.98 Total: 8.22 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -1.15 Total: 8.10 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: 0.92 Total: -72.47 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.94 -5.06 -43.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.885 kcal (2) G-P(sol) polarization free energy of solvation -37.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 187.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds