Wall clock time and date at job start Wed Apr 1 2020 04:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34949 * 126.03211 * 2 1 4 4 C 1.35324 * 107.74352 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.03728 * 179.97438 * 4 3 2 6 6 H 1.09002 * 110.64404 * 359.29573 * 5 4 3 7 7 C 1.54322 * 110.71875 * 236.15366 * 5 4 3 8 8 N 1.47018 * 107.27336 * 219.26911 * 7 5 4 9 9 C 1.34780 * 125.64824 * 178.90717 * 8 7 5 10 10 O 1.21593 * 120.00071 * 0.02562 * 9 8 7 11 11 C 1.47525 * 119.99776 * 179.97438 * 9 8 7 12 12 C 1.36596 * 125.76822 * 179.97438 * 11 9 8 13 13 N 1.34813 * 106.83609 * 179.97438 * 12 11 9 14 14 C 1.46505 * 126.59157 * 180.02562 * 13 12 11 15 15 N 1.40209 * 106.81346 * 359.97438 * 13 12 11 16 16 N 1.28758 * 108.36852 * 359.75270 * 15 13 12 17 17 C 1.47426 * 108.70104 * 358.94171 * 8 7 5 18 18 C 1.54909 * 104.83381 * 24.12870 * 17 8 7 19 19 H 1.08997 * 111.00194 * 81.06198 * 18 17 8 20 20 N 1.46502 * 111.00219 * 204.91950 * 18 17 8 21 21 C 1.36938 * 119.99398 * 267.19274 * 20 18 17 22 22 H 1.07995 * 120.00300 * 0.02562 * 21 20 18 23 23 C 1.38820 * 119.99492 * 179.97438 * 21 20 18 24 24 N 1.31620 * 119.99600 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99999 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47472 * 89.99760 * 25 23 21 27 27 H 1.48505 * 109.46637 * 209.99425 * 25 23 21 28 28 H 1.48498 * 109.47378 * 329.99347 * 25 23 21 29 29 C 1.39869 * 107.91937 * 0.25876 * 4 3 2 30 30 N 1.30837 * 108.20225 * 359.55794 * 29 4 3 31 31 H 1.09002 * 109.47258 * 90.00716 * 1 2 3 32 32 H 1.09007 * 109.47094 * 209.99972 * 1 2 3 33 33 H 1.09003 * 109.47547 * 330.00070 * 1 2 3 34 34 H 1.07994 * 126.12915 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.88021 * 338.68615 * 7 5 4 36 36 H 1.09005 * 109.88017 * 99.69303 * 7 5 4 37 37 H 1.07991 * 126.58126 * 359.95610 * 12 11 9 38 38 H 1.09005 * 109.46897 * 89.99817 * 14 13 12 39 39 H 1.08998 * 109.46977 * 209.99812 * 14 13 12 40 40 H 1.08998 * 109.47369 * 329.99865 * 14 13 12 41 41 H 1.08998 * 110.36876 * 142.97187 * 17 8 7 42 42 H 1.09009 * 110.36320 * 265.17860 * 17 8 7 43 43 H 0.96998 * 120.00124 * 87.19913 * 20 18 17 44 44 H 0.97004 * 119.99508 * 180.02562 * 24 23 21 45 45 H 1.07999 * 125.89747 * 179.74111 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6667 -0.0006 5 6 4.7679 1.5455 -0.0013 6 1 4.4852 2.5982 -0.0139 7 6 5.6796 1.2106 -1.2005 8 7 7.0692 1.2833 -0.7261 9 6 8.1667 1.0362 -1.4685 10 8 8.0518 0.7227 -2.6377 11 6 9.5073 1.1473 -0.8628 12 6 10.6934 0.9241 -1.5025 13 7 11.6704 1.1325 -0.5973 14 6 13.1126 1.0122 -0.8255 15 7 11.0411 1.4876 0.6043 16 7 9.7683 1.4917 0.4099 17 6 7.0634 1.6704 0.6964 18 6 5.6723 1.2345 1.2204 19 1 5.6593 0.1702 1.4552 20 7 5.2759 2.0318 2.3837 21 6 5.5580 1.5861 3.6474 22 1 6.0730 0.6470 3.7864 23 6 5.1828 2.3418 4.7498 24 7 5.4535 1.9132 5.9644 25 14 4.2927 3.9664 4.5092 26 1 2.8270 3.7289 4.4849 27 1 4.6269 4.8842 5.6278 28 1 4.7166 4.5775 3.2240 29 6 3.5347 -0.7320 -0.0070 30 7 2.2892 -1.1327 -0.0005 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.9279 2.1193 -0.0004 35 1 5.4632 0.2051 -1.5613 36 1 5.5203 1.9336 -2.0006 37 1 10.8235 0.6359 -2.5350 38 1 13.5100 1.9729 -1.1531 39 1 13.6032 0.7127 0.1005 40 1 13.2975 0.2615 -1.5939 41 1 7.8530 1.1468 1.2353 42 1 7.1876 2.7488 0.7966 43 1 4.8136 2.8753 2.2588 44 1 5.1910 2.4411 6.7347 45 1 4.4054 -1.3708 -0.0129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086977999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:44 Heat of formation + Delta-G solvation = 153.849814 kcal Electronic energy + Delta-G solvation = -30140.370107 eV Core-core repulsion = 26004.258642 eV Total energy + Delta-G solvation = -4136.111465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.18900 -42.17259 -40.72339 -38.75644 -35.95580 -35.57115 -34.41574 -33.43154 -32.59270 -31.89658 -30.10790 -29.27208 -28.57508 -27.18773 -25.82170 -24.73733 -23.34528 -23.06550 -22.49362 -21.64498 -20.87675 -20.70941 -19.53723 -18.60255 -17.75352 -17.37077 -17.24026 -16.97038 -16.51817 -16.23762 -16.19857 -15.60512 -15.44507 -15.24698 -15.06582 -14.73585 -14.38757 -14.23300 -14.14686 -13.98152 -13.81228 -13.64199 -13.52893 -13.37402 -13.25712 -13.01056 -12.90882 -12.55513 -12.38237 -12.17813 -12.05431 -11.75834 -11.68532 -11.36507 -11.28008 -11.26870 -10.94705 -10.35803 -10.27281 -9.64719 -9.41389 -9.04579 -7.95221 -5.29409 0.19070 0.64138 1.03173 1.23897 1.41724 1.46716 1.53667 1.77016 1.82633 2.00263 2.23341 2.54855 3.13774 3.34311 3.41487 3.55072 3.74686 3.84712 3.93066 4.00140 4.04978 4.10062 4.24793 4.36467 4.39668 4.43493 4.44410 4.49300 4.54841 4.60595 4.68681 4.72530 4.74592 4.85548 4.88347 5.07165 5.15559 5.19775 5.33555 5.43985 5.51197 5.74022 5.83648 6.23143 6.27421 6.42851 6.79585 6.85449 7.11690 7.14345 7.86505 8.08151 9.26570 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008499 B = 0.003906 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.718077 B = 7165.868095 C = 9815.228137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.381 5.381 3 C 0.066 3.934 4 C -0.227 4.227 5 C -0.017 4.017 6 H 0.104 0.896 7 C 0.127 3.873 8 N -0.599 5.599 9 C 0.615 3.385 10 O -0.567 6.567 11 C -0.128 4.128 12 C 0.113 3.887 13 N -0.352 5.352 14 C 0.075 3.925 15 N -0.103 5.103 16 N -0.227 5.227 17 C 0.093 3.907 18 C 0.183 3.817 19 H 0.057 0.943 20 N -0.728 5.728 21 C -0.223 4.223 22 H 0.052 0.948 23 C -0.062 4.062 24 N -0.987 5.987 25 Si 0.954 3.046 26 H -0.277 1.277 27 H -0.302 1.302 28 H -0.244 1.244 29 C 0.047 3.953 30 N -0.334 5.334 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.205 0.795 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.370 0.630 44 H 0.256 0.744 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.486 0.398 -21.746 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.164 5.164 3 C -0.081 4.081 4 C -0.239 4.239 5 C -0.037 4.037 6 H 0.122 0.878 7 C 0.004 3.996 8 N -0.330 5.330 9 C 0.403 3.597 10 O -0.447 6.447 11 C -0.269 4.269 12 C -0.045 4.045 13 N -0.136 5.136 14 C -0.064 4.064 15 N -0.083 5.083 16 N -0.099 5.099 17 C -0.033 4.033 18 C 0.073 3.927 19 H 0.075 0.925 20 N -0.370 5.370 21 C -0.354 4.354 22 H 0.070 0.930 23 C -0.253 4.253 24 N -0.637 5.637 25 Si 0.781 3.219 26 H -0.203 1.203 27 H -0.229 1.229 28 H -0.168 1.168 29 C -0.138 4.138 30 N -0.156 5.156 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.222 0.778 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.261 0.739 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.151 0.849 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.204 0.796 44 H 0.064 0.936 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.864 -0.541 -20.749 21.113 hybrid contribution 0.247 1.117 -0.045 1.145 sum 4.110 0.576 -20.795 21.205 Atomic orbital electron populations 1.22157 0.72155 1.05569 1.04653 1.48729 1.07844 1.03340 1.56461 1.22780 0.90312 0.94562 1.00448 1.19714 0.94141 0.93212 1.16851 1.20634 0.90835 0.99240 0.93038 0.87789 1.22017 0.78538 1.02583 0.96427 1.48225 1.06145 1.66297 1.12366 1.16556 0.81942 0.76758 0.84427 1.90750 1.86624 1.51238 1.16081 1.21547 0.95899 1.17470 0.91951 1.23849 0.85965 0.96072 0.98657 1.50813 1.10472 1.44461 1.07860 1.22728 0.70765 1.06605 1.06292 1.82006 0.99448 1.22243 1.04591 1.74854 1.07963 1.11257 1.15875 1.23195 1.00847 1.00048 0.79211 1.21414 0.90677 0.94822 0.85821 0.92476 1.42402 1.69740 1.23717 1.01163 1.18955 1.29717 1.03485 0.83285 0.93022 1.25469 1.02694 1.02653 0.94520 1.69906 1.54530 1.41118 0.98169 0.85430 0.78706 0.79887 0.77910 1.20277 1.22943 1.16838 1.23814 0.95127 0.95360 0.99516 1.77235 1.02192 1.09932 1.26220 0.88964 0.89678 0.87229 0.77805 0.90953 0.89818 0.73932 0.87287 0.87722 0.84857 0.90779 0.91944 0.79580 0.93561 0.80367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 11.47 127.77 1.47 2.96 16 2 N -0.38 -9.90 4.01 -369.56 -1.48 -11.38 16 3 C 0.07 1.64 11.40 83.54 0.95 2.59 16 4 C -0.23 -6.61 4.95 -20.14 -0.10 -6.71 16 5 C -0.02 -0.48 3.00 -10.35 -0.03 -0.51 16 6 H 0.10 2.67 8.00 -2.39 -0.02 2.65 16 7 C 0.13 3.51 6.43 86.73 0.56 4.07 16 8 N -0.60 -19.20 3.33 -815.54 -2.71 -21.92 16 9 C 0.62 19.74 7.85 86.69 0.68 20.42 16 10 O -0.57 -19.11 17.19 -4.01 -0.07 -19.18 16 11 C -0.13 -3.78 6.84 40.82 0.28 -3.50 16 12 C 0.11 2.21 11.31 83.85 0.95 3.16 16 13 N -0.35 -6.63 4.03 -368.58 -1.49 -8.12 16 14 C 0.07 0.45 11.51 127.77 1.47 1.92 16 15 N -0.10 -3.10 13.78 37.02 0.51 -2.59 16 16 N -0.23 -7.80 9.40 -49.99 -0.47 -8.27 16 17 C 0.09 3.39 5.81 86.85 0.50 3.90 16 18 C 0.18 6.91 3.14 46.38 0.15 7.05 16 19 H 0.06 2.38 7.59 -2.39 -0.02 2.36 16 20 N -0.73 -32.86 5.05 -316.37 -1.60 -34.45 16 21 C -0.22 -12.68 10.44 84.04 0.88 -11.80 16 22 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 23 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 24 N -0.99 -63.99 13.97 21.65 0.30 -63.69 16 25 Si 0.95 44.69 27.74 68.60 1.90 46.59 16 26 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 28 H -0.24 -10.06 6.52 99.48 0.65 -9.41 16 29 C 0.05 1.49 10.76 85.24 0.92 2.40 16 30 N -0.33 -10.77 12.58 -57.02 -0.72 -11.49 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.18 16 34 H 0.21 3.48 8.06 -2.91 -0.02 3.45 16 35 H 0.07 2.02 7.29 -2.39 -0.02 2.00 16 36 H 0.08 2.07 8.14 -2.38 -0.02 2.06 16 37 H 0.24 2.49 8.06 -2.92 -0.02 2.47 16 38 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 39 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.07 3.05 6.15 -2.39 -0.01 3.04 16 42 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 43 H 0.37 15.61 5.62 -92.71 -0.52 15.09 16 44 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 45 H 0.18 5.29 8.06 -2.91 -0.02 5.27 16 Total: -1.00 -87.28 382.53 3.77 -83.51 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.45 Total: 28.24 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 9.13 Total: 22.75 kcal Atomic # 7 Polarization: -154.27 SS G_CDS: -7.65 Total: -161.92 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.07 Total: -19.18 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.90 Total: 46.59 kcal Total: -87.28 3.77 -83.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086977999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.362 kcal (2) G-P(sol) polarization free energy of solvation -87.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds