Wall clock time and date at job start Wed Apr 1 2020 04:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34951 * 126.03008 * 2 1 4 4 C 1.35325 * 107.74345 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.04016 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.91661 * 356.09504 * 5 4 3 7 7 C 1.54904 * 111.00579 * 232.19523 * 5 4 3 8 8 N 1.47423 * 104.83587 * 204.91639 * 7 5 4 9 9 C 1.34769 * 125.65219 * 204.08895 * 8 7 5 10 10 O 1.21288 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00587 * 180.02562 * 9 8 7 12 12 N 1.46500 * 109.47656 * 180.02562 * 11 9 8 13 13 N 1.28591 * 124.61936 * 269.70269 * 12 11 9 14 14 C 1.31385 * 108.71885 * 179.82810 * 13 12 11 15 15 C 1.39671 * 105.89619 * 0.41389 * 14 13 12 16 16 N 1.28591 * 124.61453 * 90.00339 * 12 11 9 17 17 C 1.47028 * 108.70033 * 24.12624 * 8 7 5 18 18 C 1.54326 * 107.27035 * 358.94565 * 17 8 7 19 19 H 1.08994 * 110.72533 * 96.34527 * 18 17 8 20 20 N 1.46505 * 110.71655 * 219.44280 * 18 17 8 21 21 C 1.36931 * 119.99788 * 273.54427 * 20 18 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 18 24 24 N 1.31617 * 119.99873 * 180.27450 * 23 21 20 25 25 Si 1.86800 * 120.00209 * 0.27770 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99559 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00079 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99901 * 25 23 21 29 29 C 1.39876 * 107.91711 * 0.25784 * 4 3 2 30 30 N 1.30836 * 108.20260 * 359.55999 * 29 4 3 31 31 H 1.09000 * 109.47051 * 90.00764 * 1 2 3 32 32 H 1.09002 * 109.46970 * 209.99856 * 1 2 3 33 33 H 1.08991 * 109.47541 * 330.00319 * 1 2 3 34 34 H 1.07997 * 126.13055 * 359.97438 * 3 2 1 35 35 H 1.08999 * 110.36741 * 86.07575 * 7 5 4 36 36 H 1.09006 * 110.45955 * 323.80558 * 7 5 4 37 37 H 1.08997 * 109.47339 * 300.01276 * 11 9 8 38 38 H 1.09006 * 109.46320 * 60.00245 * 11 9 8 39 39 H 1.07998 * 127.05154 * 180.16340 * 14 13 12 40 40 H 1.08003 * 127.05067 * 179.72213 * 15 14 13 41 41 H 1.09001 * 109.88116 * 239.52386 * 17 8 7 42 42 H 1.09006 * 109.87821 * 118.35877 * 17 8 7 43 43 H 0.97000 * 119.99792 * 93.54222 * 20 18 17 44 44 H 0.97000 * 120.00553 * 180.02562 * 24 23 21 45 45 H 1.07999 * 125.89187 * 179.73421 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0914 0.0000 4 6 3.5437 0.6668 0.0006 5 6 4.7679 1.5456 0.0002 6 1 4.4916 2.5977 -0.0699 7 6 5.7361 1.1485 -1.1418 8 7 7.0631 1.6012 -0.6862 9 6 8.1102 1.8922 -1.4832 10 8 8.0031 1.7893 -2.6870 11 6 9.4142 2.3454 -0.8789 12 7 10.3857 2.5974 -1.9461 13 7 11.1972 1.7184 -2.4178 14 6 11.9213 2.2765 -3.3614 15 6 11.4946 3.6043 -3.4363 16 7 10.5467 3.7291 -2.5350 17 6 7.0552 1.6818 0.7818 18 6 5.6417 1.2824 1.2551 19 1 5.6119 0.2295 1.5352 20 7 5.2115 2.1264 2.3726 21 6 5.5475 1.7870 3.6559 22 1 6.1300 0.8972 3.8443 23 6 5.1448 2.5898 4.7143 24 7 5.4723 2.2665 5.9473 25 14 4.1378 4.1291 4.3885 26 1 2.6923 3.7908 4.4196 27 1 4.4316 5.1430 5.4330 28 1 4.4893 4.6773 3.0538 29 6 3.5347 -0.7320 -0.0050 30 7 2.2892 -1.1327 0.0007 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5137 34 1 1.9279 2.1194 -0.0004 35 1 5.4596 1.6546 -2.0668 36 1 5.7327 0.0680 -1.2859 37 1 9.2525 3.2618 -0.3113 38 1 9.7960 1.5696 -0.2152 39 1 12.6916 1.8061 -3.9545 40 1 11.8676 4.3713 -4.0989 41 1 7.2781 2.7008 1.0983 42 1 7.7927 0.9935 1.1948 43 1 4.6887 2.9258 2.2034 44 1 5.1906 2.8272 6.6870 45 1 4.4055 -1.3707 -0.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086981520.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:03 Heat of formation + Delta-G solvation = 166.149175 kcal Electronic energy + Delta-G solvation = -29902.163990 eV Core-core repulsion = 25766.585865 eV Total energy + Delta-G solvation = -4135.578125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.47443 -42.21882 -41.07924 -38.95931 -35.95428 -34.86337 -34.41592 -33.45837 -33.37449 -32.53096 -30.48899 -29.41960 -28.92220 -27.08177 -25.66427 -24.21557 -23.79567 -22.78139 -22.46226 -21.74038 -20.91467 -20.53220 -19.54428 -18.72355 -18.36871 -17.82566 -17.20277 -17.01831 -16.57384 -16.26857 -16.22265 -15.91544 -15.62855 -15.34187 -15.21985 -14.91164 -14.75778 -14.45248 -14.11694 -13.94333 -13.86190 -13.58340 -13.46143 -13.34400 -13.23692 -12.94190 -12.58702 -12.54800 -12.41838 -12.20504 -11.80806 -11.77753 -11.74465 -11.46540 -11.40181 -11.32581 -10.98710 -10.31323 -10.26727 -9.77233 -9.43119 -9.11557 -7.95824 -5.30101 0.74323 1.00152 1.20803 1.32409 1.42536 1.45260 1.53021 1.64730 1.73609 1.83173 1.97980 2.53937 3.16049 3.29997 3.34093 3.50323 3.74254 3.82371 3.90425 3.96861 4.00567 4.04658 4.16549 4.24587 4.32878 4.38898 4.45611 4.47419 4.55040 4.59385 4.69551 4.73703 4.82654 4.94766 5.00054 5.08462 5.11331 5.19710 5.37516 5.41117 5.66375 5.72691 5.84527 6.18075 6.26313 6.31716 6.77247 6.86116 7.13497 7.38922 7.87329 8.06071 9.25193 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.008810 B = 0.003383 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3177.277624 B = 8275.017519 C =10683.010230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.382 5.382 3 C 0.062 3.938 4 C -0.228 4.228 5 C -0.014 4.014 6 H 0.096 0.904 7 C 0.125 3.875 8 N -0.601 5.601 9 C 0.519 3.481 10 O -0.575 6.575 11 C 0.124 3.876 12 N -0.159 5.159 13 N -0.314 5.314 14 C -0.024 4.024 15 C -0.024 4.024 16 N -0.315 5.315 17 C 0.074 3.926 18 C 0.184 3.816 19 H 0.068 0.932 20 N -0.732 5.732 21 C -0.222 4.222 22 H 0.063 0.937 23 C -0.059 4.059 24 N -0.984 5.984 25 Si 0.945 3.055 26 H -0.284 1.284 27 H -0.305 1.305 28 H -0.243 1.243 29 C 0.049 3.951 30 N -0.333 5.333 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.200 0.800 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.234 0.766 40 H 0.234 0.766 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.368 0.632 44 H 0.255 0.745 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.833 1.286 -18.171 18.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 C -0.085 4.085 4 C -0.240 4.240 5 C -0.035 4.035 6 H 0.114 0.886 7 C 0.003 3.997 8 N -0.334 5.334 9 C 0.306 3.694 10 O -0.455 6.455 11 C 0.001 3.999 12 N -0.058 5.058 13 N -0.154 5.154 14 C -0.207 4.207 15 C -0.207 4.207 16 N -0.155 5.155 17 C -0.051 4.051 18 C 0.074 3.926 19 H 0.086 0.914 20 N -0.374 5.374 21 C -0.352 4.352 22 H 0.081 0.919 23 C -0.251 4.251 24 N -0.634 5.634 25 Si 0.774 3.226 26 H -0.211 1.211 27 H -0.232 1.232 28 H -0.167 1.167 29 C -0.136 4.136 30 N -0.156 5.156 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.126 0.874 34 H 0.217 0.783 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.173 0.827 38 H 0.176 0.824 39 H 0.250 0.750 40 H 0.250 0.750 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.202 0.798 44 H 0.064 0.936 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -1.000 -0.133 -17.617 17.646 hybrid contribution 0.517 1.576 -0.091 1.661 sum -0.484 1.444 -17.707 17.773 Atomic orbital electron populations 1.22147 0.72263 1.05593 1.04579 1.48726 1.07833 1.03375 1.56498 1.22763 0.90624 0.94466 1.00623 1.19668 0.93938 0.93393 1.17004 1.20683 0.90700 0.98771 0.93386 0.88575 1.22236 0.80103 1.00117 0.97289 1.48381 1.11817 1.65064 1.08132 1.20407 0.85223 0.77537 0.86222 1.90738 1.83749 1.55164 1.15810 1.21864 0.84094 1.07890 0.86071 1.47500 1.26560 1.03168 1.28586 1.74011 1.05298 1.22260 1.13852 1.25495 1.02898 0.93830 0.98478 1.25495 0.95975 0.99422 0.99845 1.74016 1.19901 1.10696 1.10891 1.23214 1.01666 1.03096 0.77152 1.21308 0.90125 0.94979 0.86220 0.91368 1.42557 1.64574 1.28485 1.01814 1.18987 1.26682 1.06536 0.83039 0.91869 1.25397 1.02599 1.02262 0.94811 1.69873 1.52946 1.41524 0.99077 0.85552 0.78850 0.80086 0.78141 1.21056 1.23217 1.16739 1.23933 0.95302 0.95122 0.99249 1.77250 1.02347 1.09844 1.26109 0.89142 0.89497 0.87363 0.78349 0.90735 0.90396 0.82655 0.82396 0.74965 0.74995 0.90112 0.89977 0.79790 0.93612 0.79369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 11.47 127.77 1.47 2.85 16 2 N -0.38 -9.27 4.01 -369.57 -1.48 -10.76 16 3 C 0.06 1.45 11.40 83.54 0.95 2.40 16 4 C -0.23 -5.93 5.02 -20.14 -0.10 -6.03 16 5 C -0.01 -0.36 3.06 -10.15 -0.03 -0.39 16 6 H 0.10 2.29 8.00 -2.39 -0.02 2.27 16 7 C 0.13 3.09 6.35 86.85 0.55 3.64 16 8 N -0.60 -15.41 3.33 -811.78 -2.70 -18.11 16 9 C 0.52 14.76 7.92 87.66 0.69 15.45 16 10 O -0.57 -21.01 16.69 -3.05 -0.05 -21.06 16 11 C 0.12 2.88 6.21 85.63 0.53 3.41 16 12 N -0.16 -4.37 3.44 -190.81 -0.66 -5.02 16 13 N -0.31 -8.49 12.05 -56.87 -0.69 -9.17 16 14 C -0.02 -0.48 12.20 85.11 1.04 0.56 16 15 C -0.02 -0.49 12.20 85.11 1.04 0.55 16 16 N -0.31 -8.57 12.05 -56.86 -0.69 -9.25 16 17 C 0.07 1.93 6.24 86.73 0.54 2.47 16 18 C 0.18 5.61 3.04 46.18 0.14 5.75 16 19 H 0.07 2.25 7.68 -2.39 -0.02 2.23 16 20 N -0.73 -28.54 4.98 -317.32 -1.58 -30.12 16 21 C -0.22 -11.13 10.46 84.04 0.88 -10.26 16 22 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 23 C -0.06 -3.21 5.50 84.86 0.47 -2.74 16 24 N -0.98 -59.64 13.97 21.65 0.30 -59.34 16 25 Si 0.95 41.62 27.74 68.60 1.90 43.52 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 28 H -0.24 -9.25 6.51 99.48 0.65 -8.60 16 29 C 0.05 1.36 10.85 85.24 0.93 2.29 16 30 N -0.33 -9.87 12.58 -57.02 -0.72 -10.59 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.20 3.28 8.06 -2.91 -0.02 3.25 16 35 H 0.07 1.92 8.04 -2.39 -0.02 1.90 16 36 H 0.08 1.86 7.36 -2.38 -0.02 1.84 16 37 H 0.16 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.16 2.90 8.14 -2.38 -0.02 2.88 16 39 H 0.23 2.42 8.06 -2.91 -0.02 2.40 16 40 H 0.23 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 42 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.37 13.82 5.57 -92.71 -0.52 13.31 16 44 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.19 4.50 7.95 -2.91 -0.02 4.47 16 Total: -1.00 -81.77 385.48 3.19 -78.59 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.45 Total: 31.36 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 9.09 Total: 19.97 kcal Atomic # 7 Polarization: -144.16 SS G_CDS: -8.20 Total: -152.37 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.05 Total: -21.06 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.90 Total: 43.52 kcal Total: -81.77 3.19 -78.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086981520.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.738 kcal (2) G-P(sol) polarization free energy of solvation -81.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds