Wall clock time and date at job start Wed Apr 1 2020 04:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34951 * 126.03008 * 2 1 4 4 C 1.35325 * 107.74345 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.04016 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.91661 * 356.09504 * 5 4 3 7 7 C 1.54904 * 111.00579 * 232.19523 * 5 4 3 8 8 N 1.47423 * 104.83587 * 204.91639 * 7 5 4 9 9 C 1.34769 * 125.65219 * 204.08895 * 8 7 5 10 10 O 1.21288 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00587 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.47737 * 180.02562 * 11 9 8 13 13 N 1.33239 * 125.52692 * 269.69828 * 12 11 9 14 14 C 1.30834 * 109.82491 * 179.84890 * 13 12 11 15 15 N 1.34431 * 108.08003 * 0.41109 * 14 13 12 16 16 H 0.96993 * 126.82321 * 179.79212 * 15 14 13 17 17 N 1.30711 * 125.52049 * 90.00234 * 12 11 9 18 18 C 1.47028 * 108.70033 * 24.12624 * 8 7 5 19 19 C 1.54326 * 107.27035 * 358.94565 * 18 8 7 20 20 H 1.08994 * 110.72533 * 96.34527 * 19 18 8 21 21 N 1.46505 * 110.71655 * 219.44280 * 19 18 8 22 22 C 1.36931 * 119.99788 * 273.54427 * 21 19 18 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 C 1.39876 * 107.91711 * 0.25784 * 4 3 2 31 31 N 1.30836 * 108.20260 * 359.55999 * 30 4 3 32 32 H 1.09000 * 109.47051 * 90.00764 * 1 2 3 33 33 H 1.09002 * 109.46970 * 209.99856 * 1 2 3 34 34 H 1.08991 * 109.47541 * 330.00319 * 1 2 3 35 35 H 1.07997 * 126.13055 * 359.97438 * 3 2 1 36 36 H 1.08999 * 110.36741 * 86.07575 * 7 5 4 37 37 H 1.09006 * 110.45955 * 323.80558 * 7 5 4 38 38 H 1.08997 * 109.47339 * 300.01276 * 11 9 8 39 39 H 1.09006 * 109.46320 * 60.00245 * 11 9 8 40 40 H 1.08001 * 125.95973 * 180.18783 * 14 13 12 41 41 H 1.09001 * 109.88116 * 239.52386 * 18 8 7 42 42 H 1.09006 * 109.87821 * 118.35877 * 18 8 7 43 43 H 0.97000 * 119.99792 * 93.54222 * 21 19 18 44 44 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 45 45 H 1.07999 * 125.89187 * 179.73421 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0914 0.0000 4 6 3.5437 0.6668 0.0006 5 6 4.7679 1.5456 0.0002 6 1 4.4916 2.5977 -0.0699 7 6 5.7361 1.1485 -1.1418 8 7 7.0631 1.6012 -0.6862 9 6 8.1102 1.8922 -1.4832 10 8 8.0031 1.7893 -2.6870 11 6 9.4142 2.3454 -0.8789 12 6 10.4135 2.6046 -1.9767 13 7 11.2621 1.7084 -2.4786 14 6 11.9857 2.2603 -3.4186 15 7 11.6123 3.5468 -3.5314 16 1 11.9748 4.2058 -4.1438 17 7 10.5921 3.7466 -2.5870 18 6 7.0552 1.6818 0.7818 19 6 5.6417 1.2824 1.2551 20 1 5.6119 0.2295 1.5352 21 7 5.2115 2.1264 2.3726 22 6 5.5475 1.7870 3.6559 23 1 6.1300 0.8972 3.8443 24 6 5.1448 2.5898 4.7143 25 7 4.4354 3.6744 4.4847 26 14 5.6097 2.1309 6.4643 27 1 6.4027 0.8753 6.4527 28 1 6.4187 3.2223 7.0640 29 1 4.3770 1.9299 7.2675 30 6 3.5347 -0.7320 -0.0050 31 7 2.2892 -1.1327 0.0007 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5137 35 1 1.9279 2.1194 -0.0004 36 1 5.4596 1.6546 -2.0668 37 1 5.7327 0.0680 -1.2859 38 1 9.2525 3.2618 -0.3113 39 1 9.7960 1.5696 -0.2152 40 1 12.7521 1.7691 -3.9998 41 1 7.2781 2.7008 1.0983 42 1 7.7927 0.9935 1.1948 43 1 4.6887 2.9258 2.2034 44 1 4.1536 4.2352 5.2243 45 1 4.4055 -1.3707 -0.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087005258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:57 Heat of formation + Delta-G solvation = 157.707471 kcal Electronic energy + Delta-G solvation = -29654.851506 eV Core-core repulsion = 25518.907321 eV Total energy + Delta-G solvation = -4135.944185 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.18956 -41.00990 -39.60426 -37.38635 -34.03633 -33.45576 -33.24556 -31.94753 -31.63731 -30.66916 -29.51172 -28.23749 -27.40816 -26.05340 -24.06158 -23.04904 -22.67375 -21.19922 -20.73378 -20.47427 -19.43568 -18.92952 -18.34053 -17.33372 -16.94064 -16.42838 -15.82203 -15.62487 -15.35179 -15.20672 -14.77373 -14.56586 -14.16317 -14.03037 -13.54415 -13.37120 -13.09935 -13.02670 -12.76012 -12.66624 -12.50669 -12.34113 -12.21482 -12.11918 -11.79894 -11.62928 -11.16014 -10.86456 -10.83088 -10.55462 -10.27924 -10.15341 -10.13665 -10.06297 -9.92610 -9.77692 -9.53060 -9.14888 -9.02002 -8.30848 -8.00398 -7.05681 -5.83832 -3.13392 1.50760 2.15981 2.52062 2.70111 2.75838 2.86165 3.08426 3.36606 3.40146 3.47063 3.48193 4.00979 4.52190 4.54389 4.66796 4.77074 4.83569 5.07584 5.16074 5.16918 5.23517 5.32953 5.40477 5.43376 5.45752 5.50713 5.59193 5.68932 5.80369 5.86860 5.94951 6.03516 6.09446 6.18345 6.26494 6.36137 6.41320 6.52155 6.60602 6.89031 6.89942 6.92709 7.24541 7.65967 7.81164 7.94956 7.97442 8.33336 8.39072 9.46314 10.00256 10.35122 11.38244 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.003309 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.327833 B = 8460.302437 C =11352.334044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.381 5.381 3 C 0.064 3.936 4 C -0.204 4.204 5 C -0.030 4.030 6 H 0.088 0.912 7 C 0.122 3.878 8 N -0.611 5.611 9 C 0.538 3.462 10 O -0.546 6.546 11 C -0.047 4.047 12 C 0.255 3.745 13 N -0.534 5.534 14 C 0.259 3.741 15 N -0.486 5.486 16 H 0.440 0.560 17 N -0.304 5.304 18 C 0.068 3.932 19 C 0.184 3.816 20 H 0.068 0.932 21 N -0.708 5.708 22 C -0.242 4.242 23 H 0.073 0.927 24 C -0.008 4.008 25 N -0.930 5.930 26 Si 0.904 3.096 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.293 1.293 30 C 0.058 3.942 31 N -0.304 5.304 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.171 0.829 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.222 0.778 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.386 0.614 44 H 0.255 0.745 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.242 -2.699 -14.675 15.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.164 5.164 3 C -0.081 4.081 4 C -0.216 4.216 5 C -0.052 4.052 6 H 0.107 0.893 7 C -0.001 4.001 8 N -0.345 5.345 9 C 0.325 3.675 10 O -0.424 6.424 11 C -0.089 4.089 12 C -0.028 4.028 13 N -0.262 5.262 14 C -0.040 4.040 15 N -0.204 5.204 16 H 0.285 0.715 17 N -0.133 5.133 18 C -0.058 4.058 19 C 0.071 3.929 20 H 0.086 0.914 21 N -0.348 5.348 22 C -0.373 4.373 23 H 0.091 0.909 24 C -0.205 4.205 25 N -0.578 5.578 26 Si 0.735 3.265 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.220 1.220 30 C -0.128 4.128 31 N -0.125 5.125 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.188 0.812 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.238 0.762 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.927 -3.541 -14.839 15.753 hybrid contribution 1.064 1.207 0.528 1.694 sum 4.991 -2.333 -14.311 15.335 Atomic orbital electron populations 1.21766 0.74723 1.04365 1.02770 1.48312 1.06319 1.03931 1.57815 1.22270 0.90830 0.93199 1.01839 1.19604 0.93536 0.93425 1.15019 1.20845 0.90864 0.98334 0.95115 0.89332 1.22179 0.81079 0.99375 0.97490 1.48442 1.11722 1.65950 1.08390 1.19732 0.84087 0.77450 0.86280 1.90695 1.83419 1.53881 1.14452 1.19883 0.89653 1.05284 0.94088 1.23371 0.95734 0.86703 0.97042 1.70360 1.09881 1.33287 1.12683 1.26042 0.98593 0.83265 0.96088 1.48078 1.29600 1.11478 1.31269 0.71462 1.78010 1.06574 1.23165 1.05537 1.23451 1.02613 1.02438 0.77336 1.21230 0.88681 0.95859 0.87117 0.91408 1.42309 1.63351 1.28178 1.00969 1.19277 1.28132 1.06684 0.83201 0.90916 1.24722 1.00520 0.97327 0.97906 1.69663 1.41732 1.15741 1.30623 0.86163 0.77599 0.77579 0.85117 1.20425 1.21846 1.21969 1.23655 0.94961 0.94637 0.99575 1.77270 1.01692 1.08401 1.25167 0.91225 0.89628 0.89607 0.81152 0.90901 0.91417 0.86285 0.85968 0.76214 0.90478 0.91817 0.77941 0.93531 0.80434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.01 11.47 59.85 0.69 1.69 16 2 N -0.38 -5.42 4.01 -68.16 -0.27 -5.69 16 3 C 0.06 0.92 11.40 -17.22 -0.20 0.73 16 4 C -0.20 -3.13 5.02 -105.05 -0.53 -3.66 16 5 C -0.03 -0.47 3.06 -89.63 -0.27 -0.74 16 6 H 0.09 1.40 8.00 -51.93 -0.42 0.98 16 7 C 0.12 1.80 6.35 -2.53 -0.02 1.78 16 8 N -0.61 -9.42 3.33 -170.52 -0.57 -9.99 16 9 C 0.54 8.79 7.84 -10.99 -0.09 8.71 16 10 O -0.55 -10.74 16.29 5.55 0.09 -10.65 16 11 C -0.05 -0.64 5.52 -29.04 -0.16 -0.80 16 12 C 0.25 3.77 6.63 -156.86 -1.04 2.73 16 13 N -0.53 -7.35 11.19 -11.98 -0.13 -7.49 16 14 C 0.26 2.40 13.13 -90.65 -1.19 1.21 16 15 N -0.49 -4.65 7.45 29.53 0.22 -4.43 16 16 H 0.44 2.34 8.96 -182.34 -1.63 0.71 16 17 N -0.30 -4.36 12.80 32.42 0.41 -3.94 16 18 C 0.07 1.07 6.24 -3.06 -0.02 1.05 16 19 C 0.18 3.24 3.04 -66.09 -0.20 3.04 16 20 H 0.07 1.24 7.68 -51.93 -0.40 0.84 16 21 N -0.71 -15.91 5.18 -51.65 -0.27 -16.17 16 22 C -0.24 -6.17 9.98 -15.06 -0.15 -6.32 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 25 N -0.93 -26.49 13.06 55.49 0.72 -25.76 16 26 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 C 0.06 0.89 10.85 -17.36 -0.19 0.70 16 31 N -0.30 -4.92 12.58 30.63 0.39 -4.53 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.17 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.07 1.11 8.04 -51.93 -0.42 0.69 16 37 H 0.07 0.95 7.36 -51.93 -0.38 0.57 16 38 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 39 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.08 1.30 8.03 -51.93 -0.42 0.89 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.39 9.32 7.71 -40.82 -0.31 9.01 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.18 2.33 7.95 -52.49 -0.42 1.92 16 LS Contribution 387.60 15.07 5.84 5.84 Total: -1.00 -37.44 387.60 -9.37 -46.81 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.32 Total: 9.78 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -3.46 Total: 9.79 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: 0.50 Total: -78.00 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.44 -9.37 -46.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087005258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.522 kcal (2) G-P(sol) polarization free energy of solvation -37.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds