Wall clock time and date at job start Wed Apr 1 2020 04:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34951 * 126.03008 * 2 1 4 4 C 1.35325 * 107.74345 * 179.97438 * 3 2 1 5 5 C 1.50696 * 126.04016 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.91661 * 356.09504 * 5 4 3 7 7 C 1.54904 * 111.00579 * 232.19523 * 5 4 3 8 8 N 1.47423 * 104.83587 * 204.91639 * 7 5 4 9 9 C 1.34769 * 125.65219 * 204.08895 * 8 7 5 10 10 O 1.21288 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.50697 * 120.00587 * 180.02562 * 9 8 7 12 12 C 1.50698 * 109.47737 * 180.02562 * 11 9 8 13 13 N 1.33239 * 125.52692 * 269.69828 * 12 11 9 14 14 C 1.30834 * 109.82491 * 179.84890 * 13 12 11 15 15 N 1.34431 * 108.08003 * 0.41109 * 14 13 12 16 16 H 0.96993 * 126.82321 * 179.79212 * 15 14 13 17 17 N 1.30711 * 125.52049 * 90.00234 * 12 11 9 18 18 C 1.47028 * 108.70033 * 24.12624 * 8 7 5 19 19 C 1.54326 * 107.27035 * 358.94565 * 18 8 7 20 20 H 1.08994 * 110.72533 * 96.34527 * 19 18 8 21 21 N 1.46505 * 110.71655 * 219.44280 * 19 18 8 22 22 C 1.36931 * 119.99788 * 273.54427 * 21 19 18 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48508 * 109.46872 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 119.99997 * 26 24 22 29 29 H 1.48498 * 109.47018 * 240.00044 * 26 24 22 30 30 C 1.39876 * 107.91711 * 0.25784 * 4 3 2 31 31 N 1.30836 * 108.20260 * 359.55999 * 30 4 3 32 32 H 1.09000 * 109.47051 * 90.00764 * 1 2 3 33 33 H 1.09002 * 109.46970 * 209.99856 * 1 2 3 34 34 H 1.08991 * 109.47541 * 330.00319 * 1 2 3 35 35 H 1.07997 * 126.13055 * 359.97438 * 3 2 1 36 36 H 1.08999 * 110.36741 * 86.07575 * 7 5 4 37 37 H 1.09006 * 110.45955 * 323.80558 * 7 5 4 38 38 H 1.08997 * 109.47339 * 300.01276 * 11 9 8 39 39 H 1.09006 * 109.46320 * 60.00245 * 11 9 8 40 40 H 1.08001 * 125.95973 * 180.18783 * 14 13 12 41 41 H 1.09001 * 109.88116 * 239.52386 * 18 8 7 42 42 H 1.09006 * 109.87821 * 118.35877 * 18 8 7 43 43 H 0.97000 * 119.99792 * 93.54222 * 21 19 18 44 44 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 45 45 H 1.07999 * 125.89187 * 179.73421 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0914 0.0000 4 6 3.5437 0.6668 0.0006 5 6 4.7679 1.5456 0.0002 6 1 4.4916 2.5977 -0.0699 7 6 5.7361 1.1485 -1.1418 8 7 7.0631 1.6012 -0.6862 9 6 8.1102 1.8922 -1.4832 10 8 8.0031 1.7893 -2.6870 11 6 9.4142 2.3454 -0.8789 12 6 10.4135 2.6046 -1.9767 13 7 11.2621 1.7084 -2.4786 14 6 11.9857 2.2603 -3.4186 15 7 11.6123 3.5468 -3.5314 16 1 11.9748 4.2058 -4.1438 17 7 10.5921 3.7466 -2.5870 18 6 7.0552 1.6818 0.7818 19 6 5.6417 1.2824 1.2551 20 1 5.6119 0.2295 1.5352 21 7 5.2115 2.1264 2.3726 22 6 5.5475 1.7870 3.6559 23 1 6.1300 0.8972 3.8443 24 6 5.1448 2.5898 4.7143 25 7 4.4354 3.6744 4.4847 26 14 5.6097 2.1309 6.4643 27 1 6.4027 0.8753 6.4527 28 1 6.4187 3.2223 7.0640 29 1 4.3770 1.9299 7.2675 30 6 3.5347 -0.7320 -0.0050 31 7 2.2892 -1.1327 0.0007 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5137 35 1 1.9279 2.1194 -0.0004 36 1 5.4596 1.6546 -2.0668 37 1 5.7327 0.0680 -1.2859 38 1 9.2525 3.2618 -0.3113 39 1 9.7960 1.5696 -0.2152 40 1 12.7521 1.7691 -3.9998 41 1 7.2781 2.7008 1.0983 42 1 7.7927 0.9935 1.1948 43 1 4.6887 2.9258 2.2034 44 1 4.1536 4.2352 5.2243 45 1 4.4055 -1.3707 -0.0101 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087005258.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:56 Heat of formation + Delta-G solvation = 131.336756 kcal Electronic energy + Delta-G solvation = -29655.995026 eV Core-core repulsion = 25518.907321 eV Total energy + Delta-G solvation = -4137.087705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.06350 -42.15213 -40.88898 -38.75904 -35.77494 -34.55095 -34.21918 -33.25180 -32.68603 -32.21125 -30.59373 -29.38246 -28.87436 -27.06508 -25.80382 -24.24153 -23.63863 -22.44072 -21.80995 -21.68086 -20.69444 -20.07619 -19.19510 -19.07912 -18.25566 -17.64976 -17.02535 -16.77481 -16.52231 -16.20623 -16.12975 -15.70963 -15.41449 -15.33483 -15.05033 -14.78114 -14.37252 -14.20003 -13.85504 -13.79837 -13.69281 -13.48026 -13.19730 -13.17870 -13.10853 -12.98334 -12.84385 -12.55045 -12.34796 -12.07922 -11.75832 -11.68666 -11.36259 -11.26502 -11.07496 -11.01095 -10.90498 -10.61143 -10.26166 -9.60846 -9.23446 -8.88976 -7.86643 -5.13852 0.65931 1.03754 1.52397 1.54804 1.58792 1.62547 1.66617 1.78443 1.87065 1.91077 2.21869 2.62747 3.17633 3.45241 3.53910 3.63682 3.69452 3.91892 4.02078 4.04794 4.12439 4.19326 4.33965 4.41624 4.44971 4.46783 4.48168 4.54576 4.59575 4.65784 4.71318 4.83155 4.88169 5.05472 5.10363 5.24629 5.25752 5.30164 5.36425 5.50900 5.64728 5.78465 6.21358 6.29608 6.34506 6.52442 6.81140 7.10815 7.11489 7.43356 8.15840 8.39844 9.36371 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.007956 B = 0.003309 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3518.327833 B = 8460.302437 C =11352.334044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.382 5.382 3 C 0.061 3.939 4 C -0.224 4.224 5 C -0.013 4.013 6 H 0.083 0.917 7 C 0.126 3.874 8 N -0.607 5.607 9 C 0.538 3.462 10 O -0.582 6.582 11 C -0.044 4.044 12 C 0.236 3.764 13 N -0.574 5.574 14 C 0.276 3.724 15 N -0.475 5.475 16 H 0.458 0.542 17 N -0.342 5.342 18 C 0.080 3.920 19 C 0.181 3.819 20 H 0.067 0.933 21 N -0.716 5.716 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.068 4.068 25 N -0.965 5.965 26 Si 0.959 3.041 27 H -0.265 1.265 28 H -0.297 1.297 29 H -0.302 1.302 30 C 0.050 3.950 31 N -0.331 5.331 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.192 0.808 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.128 0.872 39 H 0.139 0.861 40 H 0.276 0.724 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.376 0.624 44 H 0.248 0.752 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.296 -3.492 -15.540 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.165 5.165 3 C -0.086 4.086 4 C -0.235 4.235 5 C -0.034 4.034 6 H 0.101 0.899 7 C 0.003 3.997 8 N -0.340 5.340 9 C 0.326 3.674 10 O -0.462 6.462 11 C -0.086 4.086 12 C -0.047 4.047 13 N -0.303 5.303 14 C -0.022 4.022 15 N -0.195 5.195 16 H 0.307 0.693 17 N -0.172 5.172 18 C -0.045 4.045 19 C 0.070 3.930 20 H 0.085 0.915 21 N -0.355 5.355 22 C -0.361 4.361 23 H 0.097 0.903 24 C -0.261 4.261 25 N -0.616 5.616 26 Si 0.790 3.210 27 H -0.190 1.190 28 H -0.224 1.224 29 H -0.230 1.230 30 C -0.135 4.135 31 N -0.153 5.153 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.209 0.791 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.291 0.709 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.209 0.791 44 H 0.057 0.943 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.004 -4.365 -15.744 17.088 hybrid contribution 0.741 1.419 0.641 1.725 sum 5.745 -2.946 -15.103 16.425 Atomic orbital electron populations 1.22129 0.72319 1.05508 1.04528 1.48691 1.07767 1.03297 1.56711 1.22676 0.90860 0.94243 1.00818 1.19674 0.93850 0.93540 1.16482 1.20628 0.90839 0.98107 0.93875 0.89877 1.22177 0.80626 0.99912 0.96998 1.48430 1.11886 1.65598 1.08094 1.20154 0.84789 0.76638 0.85822 1.90670 1.84088 1.55496 1.15968 1.19906 0.88290 1.06099 0.94286 1.23494 0.96393 0.87201 0.97627 1.70331 1.11090 1.34272 1.14639 1.27055 0.97870 0.82731 0.94567 1.48002 1.28476 1.12387 1.30604 0.69330 1.77884 1.08535 1.23779 1.07007 1.23146 1.01527 1.02295 0.77539 1.21351 0.90052 0.94883 0.86719 0.91523 1.42392 1.63432 1.28368 1.01311 1.19620 1.26156 1.05938 0.84370 0.90264 1.25362 1.01758 0.97891 1.01051 1.69793 1.43855 1.17034 1.30927 0.85274 0.76815 0.77533 0.81376 1.18960 1.22430 1.22976 1.23929 0.95351 0.94892 0.99352 1.77209 1.02259 1.09701 1.26180 0.89146 0.89300 0.87698 0.79141 0.91291 0.90394 0.85406 0.84298 0.70879 0.91366 0.90158 0.79119 0.94323 0.79066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.65 11.47 127.77 1.47 3.11 16 2 N -0.38 -10.41 4.01 -369.57 -1.48 -11.89 16 3 C 0.06 1.69 11.40 83.54 0.95 2.64 16 4 C -0.22 -6.69 5.02 -20.14 -0.10 -6.80 16 5 C -0.01 -0.40 3.06 -10.15 -0.03 -0.44 16 6 H 0.08 2.60 8.00 -2.39 -0.02 2.59 16 7 C 0.13 3.62 6.35 86.85 0.55 4.17 16 8 N -0.61 -18.22 3.33 -811.78 -2.70 -20.92 16 9 C 0.54 17.31 7.84 87.66 0.69 18.00 16 10 O -0.58 -22.80 16.29 -3.05 -0.05 -22.85 16 11 C -0.04 -1.18 5.52 29.10 0.16 -1.02 16 12 C 0.24 6.83 6.63 138.63 0.92 7.75 16 13 N -0.57 -14.98 11.19 -191.80 -2.15 -17.13 16 14 C 0.28 4.39 13.13 180.36 2.37 6.75 16 15 N -0.47 -8.21 7.45 -60.49 -0.45 -8.66 16 16 H 0.46 3.91 8.96 -213.10 -1.91 2.00 16 17 N -0.34 -9.56 12.80 -51.34 -0.66 -10.22 16 18 C 0.08 2.46 6.24 86.73 0.54 3.00 16 19 C 0.18 6.23 3.04 46.18 0.14 6.37 16 20 H 0.07 2.35 7.68 -2.39 -0.02 2.33 16 21 N -0.72 -31.95 5.18 -317.32 -1.64 -33.59 16 22 C -0.23 -11.53 9.98 84.04 0.84 -10.69 16 23 H 0.08 3.83 7.83 -2.91 -0.02 3.81 16 24 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 25 N -0.97 -55.67 13.06 21.65 0.28 -55.38 16 26 Si 0.96 44.10 29.55 68.60 2.03 46.13 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 29 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 30 C 0.05 1.50 10.85 85.24 0.93 2.42 16 31 N -0.33 -10.46 12.58 -57.02 -0.72 -11.18 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.19 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.07 2.07 8.04 -2.39 -0.02 2.05 16 37 H 0.08 2.11 7.36 -2.38 -0.02 2.09 16 38 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 39 H 0.14 3.14 8.14 -2.38 -0.02 3.12 16 40 H 0.28 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.07 2.25 8.03 -2.39 -0.02 2.23 16 42 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.38 18.29 7.71 -92.71 -0.72 17.57 16 44 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 45 H 0.19 4.86 7.95 -2.91 -0.02 4.84 16 Total: -1.00 -81.37 387.60 0.77 -80.60 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -1.58 Total: 33.01 kcal Atomic # 6 Polarization: 22.19 SS G_CDS: 9.88 Total: 32.08 kcal Atomic # 7 Polarization: -159.46 SS G_CDS: -9.51 Total: -168.97 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -81.37 0.77 -80.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087005258.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.938 kcal (2) G-P(sol) polarization free energy of solvation -81.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds