Wall clock time and date at job start Wed Apr 1 2020 03:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47149 * 2 1 4 4 C 1.35408 * 126.44194 * 265.02742 * 3 2 1 5 5 C 1.35562 * 107.16060 * 179.97438 * 4 3 2 6 6 N 1.33101 * 108.34900 * 0.26171 * 5 4 3 7 7 C 1.31615 * 109.09872 * 359.56535 * 6 5 4 8 8 C 1.47404 * 125.86541 * 180.16632 * 7 6 5 9 9 O 1.21606 * 119.99893 * 180.31398 * 8 7 6 10 10 N 1.34775 * 120.00401 * 0.31054 * 8 7 6 11 11 C 1.46495 * 120.00213 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47037 * 180.02562 * 11 10 8 13 13 C 1.35360 * 126.75161 * 94.71468 * 12 11 10 14 14 N 1.35311 * 106.17474 * 179.85305 * 13 12 11 15 15 C 1.46497 * 125.86718 * 180.18994 * 14 13 12 16 16 C 1.53942 * 113.74351 * 14.03195 * 15 14 13 17 17 N 1.47812 * 86.04005 * 222.08963 * 16 15 14 18 18 C 1.36940 * 134.45973 * 204.64879 * 17 16 15 19 19 H 1.08000 * 120.00142 * 173.34107 * 18 17 16 20 20 C 1.38811 * 119.99524 * 353.34451 * 18 17 16 21 21 N 1.31615 * 120.00412 * 5.05650 * 20 18 17 22 22 Si 1.86803 * 119.99784 * 185.06646 * 20 18 17 23 23 H 1.48505 * 109.47213 * 94.98378 * 22 20 18 24 24 H 1.48500 * 109.47015 * 214.98620 * 22 20 18 25 25 H 1.48505 * 109.46769 * 334.98453 * 22 20 18 26 26 C 1.47587 * 91.04862 * 24.54767 * 17 16 15 27 27 N 1.28719 * 108.26468 * 0.41485 * 14 13 12 28 28 N 1.28633 * 110.17973 * 359.73657 * 27 14 13 29 29 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46779 * 299.99194 * 1 2 3 31 31 H 1.08997 * 109.47764 * 59.99625 * 1 2 3 32 32 H 1.09004 * 109.46629 * 240.00282 * 2 1 3 33 33 H 1.08997 * 109.47764 * 120.00375 * 2 1 3 34 34 H 1.07993 * 126.41997 * 359.93023 * 4 3 2 35 35 H 1.07995 * 125.82886 * 180.02562 * 5 4 3 36 36 H 0.97003 * 119.99791 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.47408 * 300.00262 * 11 10 8 38 38 H 1.09003 * 109.47264 * 60.00662 * 11 10 8 39 39 H 1.07999 * 126.90910 * 0.02562 * 13 12 11 40 40 H 1.08998 * 112.94625 * 145.62617 * 15 14 13 41 41 H 1.09003 * 113.76996 * 336.35151 * 16 15 14 42 42 H 1.09001 * 113.77039 * 107.74793 * 16 15 14 43 43 H 0.97001 * 120.00090 * 180.02562 * 21 20 18 44 44 H 1.09004 * 113.76452 * 221.15283 * 26 17 16 45 45 H 1.08994 * 113.86874 * 89.77228 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3754 2.1080 -1.0852 5 6 2.7648 3.3276 -0.6393 6 7 2.6539 3.3438 0.6870 7 6 2.1984 2.1785 1.0953 8 6 1.9342 1.7966 2.4943 9 8 1.5173 0.6838 2.7525 10 7 2.1545 2.6808 3.4874 11 6 1.8913 2.3014 4.8777 12 6 2.2161 3.4603 5.7846 13 6 1.3515 4.3928 6.2484 14 7 2.0796 5.2292 7.0239 15 6 1.5659 6.3963 7.7451 16 6 0.0301 6.4384 7.8422 17 7 0.1532 7.8813 7.5461 18 6 -0.6228 8.9814 7.7967 19 1 -0.2522 9.9684 7.5622 20 6 -1.8856 8.8280 8.3522 21 7 -2.2981 7.6367 8.7300 22 14 -2.9997 10.3125 8.5632 23 1 -3.9131 10.4157 7.3969 24 1 -3.7986 10.1592 9.8056 25 1 -2.1730 11.5427 8.6550 26 6 1.4488 7.6606 6.8746 27 7 3.3019 4.8260 7.0151 28 7 3.4166 3.7731 6.2852 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3547 1.7778 -2.1132 35 1 3.1101 4.1451 -1.2548 36 1 2.4867 3.5686 3.2815 37 1 0.8399 2.0368 4.9893 38 1 2.5117 1.4458 5.1446 39 1 0.2930 4.4550 6.0433 40 1 2.0705 6.5638 8.6966 41 1 -0.4752 5.8711 7.0606 42 1 -0.3530 6.2245 8.8400 43 1 -3.1807 7.5294 9.1178 44 1 2.1962 8.4210 7.1013 45 1 1.3630 7.4532 5.8080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094287934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:20 Heat of formation + Delta-G solvation = 167.505546 kcal Electronic energy + Delta-G solvation = -29040.026590 eV Core-core repulsion = 24904.507281 eV Total energy + Delta-G solvation = -4135.519308 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.36074 -43.27171 -40.40913 -39.92403 -36.64272 -35.78865 -34.95062 -33.67955 -32.62295 -31.34988 -30.64501 -29.70732 -27.96563 -26.84480 -26.02388 -25.06325 -23.87853 -23.41837 -22.49169 -22.13794 -21.16481 -21.05259 -19.14956 -18.88029 -18.22077 -17.60076 -17.34053 -16.96560 -16.93227 -16.71719 -16.06518 -15.87984 -15.64687 -15.50702 -15.18465 -14.82078 -14.70565 -14.54067 -14.39174 -14.23486 -13.73249 -13.60983 -13.53500 -13.40811 -12.97915 -12.96725 -12.79771 -12.64661 -12.43214 -12.30784 -12.09510 -11.80053 -11.75068 -11.48909 -11.17550 -11.01143 -10.89747 -10.83443 -10.34668 -10.29324 -9.50722 -9.10049 -8.02620 -5.37068 0.32423 0.55087 1.11297 1.29008 1.47571 1.50047 1.57483 1.60845 1.63153 2.36746 2.39567 2.42909 3.05654 3.10622 3.29942 3.32139 3.33115 3.71549 3.76740 3.86567 3.91053 3.99181 4.07761 4.15179 4.37296 4.40761 4.45623 4.49138 4.54766 4.59020 4.68081 4.75098 4.81662 4.90638 5.00484 5.03431 5.07302 5.13549 5.21641 5.26616 5.36798 5.65687 5.66761 5.76423 5.94430 6.25382 6.78968 6.80042 7.02632 7.44842 7.48013 8.33943 9.14895 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.002155 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.032137 B =12988.472317 C =13774.937026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.092 3.908 3 N -0.412 5.412 4 C -0.005 4.005 5 C -0.051 4.051 6 N -0.472 5.472 7 C 0.103 3.897 8 C 0.608 3.392 9 O -0.558 6.558 10 N -0.696 5.696 11 C 0.222 3.778 12 C -0.052 4.052 13 C -0.011 4.011 14 N -0.269 5.269 15 C 0.105 3.895 16 C 0.169 3.831 17 N -0.628 5.628 18 C -0.240 4.240 19 H 0.091 0.909 20 C -0.055 4.055 21 N -0.947 5.947 22 Si 0.978 3.022 23 H -0.288 1.288 24 H -0.294 1.294 25 H -0.266 1.266 26 C 0.123 3.877 27 N -0.107 5.107 28 N -0.280 5.280 29 H 0.096 0.904 30 H 0.038 0.962 31 H 0.067 0.933 32 H 0.130 0.870 33 H 0.093 0.907 34 H 0.228 0.772 35 H 0.199 0.801 36 H 0.413 0.587 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.208 0.792 40 H 0.141 0.859 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.099 -15.012 -19.578 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.029 4.029 3 N -0.093 5.093 4 C -0.145 4.145 5 C -0.204 4.204 6 N -0.194 5.194 7 C -0.154 4.154 8 C 0.393 3.607 9 O -0.437 6.437 10 N -0.347 5.347 11 C 0.098 3.902 12 C -0.191 4.191 13 C -0.165 4.165 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.043 3.957 17 N -0.355 5.355 18 C -0.367 4.367 19 H 0.108 0.892 20 C -0.249 4.249 21 N -0.594 5.594 22 Si 0.806 3.194 23 H -0.215 1.215 24 H -0.220 1.220 25 H -0.191 1.191 26 C -0.003 4.003 27 N -0.085 5.085 28 N -0.146 5.146 29 H 0.115 0.885 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.111 0.889 34 H 0.244 0.756 35 H 0.216 0.784 36 H 0.249 0.751 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.224 0.776 40 H 0.159 0.841 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 8.096 -14.879 -18.076 24.773 hybrid contribution -1.892 0.619 -0.508 2.054 sum 6.204 -14.260 -18.584 24.232 Atomic orbital electron populations 1.22030 0.93292 1.04283 1.01958 1.22325 0.96491 0.77691 1.06365 1.45533 1.44395 1.13529 1.05842 1.23657 1.03620 0.92896 0.94280 1.22996 1.07918 0.99270 0.90241 1.70155 1.15454 1.19218 1.14586 1.22403 1.12972 0.89592 0.90474 1.16526 0.77514 0.84126 0.82507 1.90779 1.47813 1.21062 1.84021 1.45664 1.66029 1.17362 1.05694 1.19387 1.02887 0.91729 0.76236 1.21889 0.90016 1.01341 1.05870 1.23838 1.01884 0.92724 0.98008 1.47722 1.06250 1.20926 1.31200 1.24728 0.97129 0.81056 0.96843 1.22560 0.87517 0.85063 1.00603 1.45906 1.21859 1.03400 1.64324 1.19338 0.95710 0.85838 1.35839 0.89157 1.25629 0.98476 0.99668 1.01139 1.69925 1.19764 1.22839 1.46849 0.85068 0.78660 0.78925 0.76721 1.21450 1.22024 1.19080 1.23024 0.88520 0.93271 0.95466 1.78272 1.01347 1.09493 1.19414 1.75004 1.23084 1.07336 1.09214 0.88520 0.94316 0.91365 0.85239 0.88862 0.75599 0.78437 0.75102 0.87685 0.89207 0.77560 0.84148 0.93541 0.91950 0.93727 0.90545 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.23 71.98 0.74 -1.18 16 2 C 0.09 1.13 6.18 86.38 0.53 1.66 16 3 N -0.41 -7.15 2.76 -516.46 -1.42 -8.58 16 4 C -0.01 -0.07 11.53 83.52 0.96 0.90 16 5 C -0.05 -0.89 11.85 83.88 0.99 0.10 16 6 N -0.47 -11.70 10.89 -189.53 -2.06 -13.77 16 7 C 0.10 2.49 7.79 136.28 1.06 3.55 16 8 C 0.61 15.77 7.81 86.66 0.68 16.45 16 9 O -0.56 -15.56 14.51 -4.05 -0.06 -15.62 16 10 N -0.70 -17.22 5.54 -470.15 -2.61 -19.83 16 11 C 0.22 5.23 6.23 85.63 0.53 5.77 16 12 C -0.05 -1.46 6.62 41.60 0.28 -1.18 16 13 C -0.01 -0.32 10.72 83.49 0.89 0.58 16 14 N -0.27 -8.65 3.54 -332.02 -1.18 -9.83 16 15 C 0.10 3.56 5.14 46.75 0.24 3.80 16 16 C 0.17 6.97 6.81 86.44 0.59 7.56 16 17 N -0.63 -29.02 3.70 -716.63 -2.65 -31.68 16 18 C -0.24 -12.36 10.70 84.03 0.90 -11.47 16 19 H 0.09 4.47 7.83 -2.91 -0.02 4.44 16 20 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 21 N -0.95 -52.60 11.51 21.65 0.25 -52.35 16 22 Si 0.98 42.83 29.56 68.60 2.03 44.85 16 23 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 C 0.12 4.50 8.74 86.48 0.76 5.26 16 27 N -0.11 -3.69 13.16 37.02 0.49 -3.21 16 28 N -0.28 -9.33 12.41 -48.59 -0.60 -9.93 16 29 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.72 7.86 -2.38 -0.02 0.70 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.13 0.60 8.13 -2.38 -0.02 0.58 16 33 H 0.09 1.51 6.64 -2.39 -0.02 1.49 16 34 H 0.23 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 36 H 0.41 10.59 8.15 -92.71 -0.76 9.83 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.21 5.16 6.74 -2.91 -0.02 5.14 16 40 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 41 H 0.05 1.88 6.31 -2.39 -0.02 1.86 16 42 H 0.06 2.89 7.37 -2.39 -0.02 2.88 16 43 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 44 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -69.73 385.18 2.08 -67.64 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.28 Total: 22.92 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 9.62 Total: 29.36 kcal Atomic # 7 Polarization: -139.37 SS G_CDS: -9.79 Total: -149.16 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.06 Total: -15.62 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -69.73 2.08 -67.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094287934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 235.149 kcal (2) G-P(sol) polarization free energy of solvation -69.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 165.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds