Wall clock time and date at job start Wed Apr 1 2020 04:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28445 * 125.18614 * 2 1 4 4 C 1.30868 * 110.92723 * 180.02562 * 3 2 1 5 5 C 1.39679 * 107.85915 * 359.77221 * 4 3 2 6 6 C 1.36600 * 125.19177 * 180.02562 * 2 1 3 7 7 C 1.47158 * 126.88402 * 359.93446 * 6 2 1 8 8 O 1.21632 * 119.99974 * 6.09529 * 7 6 2 9 9 N 1.34776 * 119.99916 * 186.09238 * 7 6 2 10 10 C 1.47023 * 125.64999 * 354.94609 * 9 7 6 11 11 C 1.54326 * 107.27124 * 181.02499 * 10 9 7 12 12 C 1.55150 * 102.94430 * 22.19400 * 11 10 9 13 13 H 1.08997 * 111.03976 * 82.58162 * 12 11 10 14 14 N 1.46496 * 111.00600 * 206.42597 * 12 11 10 15 15 C 1.35307 * 125.87085 * 78.66720 * 14 12 11 16 16 C 1.35355 * 106.17690 * 179.97438 * 15 14 12 17 17 C 1.50700 * 126.75211 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46655 * 95.04875 * 17 16 15 19 19 C 1.36946 * 119.99626 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99686 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99682 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00356 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99753 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47149 * 59.99931 * 23 21 19 25 25 H 1.48504 * 109.46925 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47095 * 299.99312 * 23 21 19 27 27 N 1.33771 * 106.49303 * 359.97438 * 16 15 14 28 28 N 1.28634 * 108.88880 * 0.02562 * 27 16 15 29 29 C 1.47424 * 125.65007 * 174.90886 * 9 7 6 30 30 H 1.09004 * 109.46887 * 274.25826 * 1 2 3 31 31 H 1.08992 * 109.47466 * 34.25947 * 1 2 3 32 32 H 1.09004 * 109.46913 * 154.26824 * 1 2 3 33 33 H 1.07993 * 126.07256 * 180.02562 * 4 3 2 34 34 H 1.07996 * 127.31771 * 180.23672 * 5 4 3 35 35 H 1.08996 * 109.88407 * 300.44494 * 10 9 7 36 36 H 1.08999 * 109.88031 * 61.45283 * 10 9 7 37 37 H 1.09001 * 110.71455 * 263.82753 * 11 10 9 38 38 H 1.09002 * 110.71533 * 140.56252 * 11 10 9 39 39 H 1.08004 * 126.91486 * 359.92763 * 15 14 12 40 40 H 1.09001 * 109.47248 * 215.04840 * 17 16 15 41 41 H 1.09004 * 109.47200 * 335.05117 * 17 16 15 42 42 H 0.96993 * 120.00410 * 359.97438 * 18 17 16 43 43 H 0.97002 * 120.00406 * 180.02562 * 22 21 19 44 44 H 1.08997 * 110.36768 * 37.06169 * 29 9 7 45 45 H 1.09000 * 110.45801 * 274.79144 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2051 1.0498 0.0000 4 6 3.4735 0.7274 -0.0005 5 6 3.5612 -0.6666 0.0043 6 6 2.2522 -1.1163 -0.0005 7 6 1.7993 -2.5165 0.0002 8 8 0.6155 -2.7728 -0.1105 9 7 2.6964 -3.5148 0.1235 10 6 4.1574 -3.3545 0.1593 11 6 4.7702 -4.7653 0.2843 12 6 3.6427 -5.6832 -0.2573 13 1 3.6629 -5.7268 -1.3463 14 7 3.7355 -7.0260 0.3210 15 6 3.3211 -7.3871 1.5574 16 6 3.5945 -8.7074 1.6761 17 6 3.3214 -9.5807 2.8735 18 7 2.0363 -10.2619 2.6980 19 6 1.5752 -11.1139 3.6660 20 1 2.1592 -11.2839 4.5584 21 6 0.3579 -11.7597 3.4995 22 7 -0.3535 -11.5529 2.4116 23 14 -0.2707 -12.9225 4.8195 24 1 -0.4292 -12.1819 6.0968 25 1 -1.5834 -13.4792 4.4045 26 1 0.7003 -14.0303 5.0067 27 7 4.1548 -9.0845 0.5214 28 7 4.2243 -8.0653 -0.2602 29 6 2.3751 -4.9484 0.2454 30 1 -0.3633 0.0763 1.0249 31 1 -0.3634 0.8493 -0.5785 32 1 -0.3633 -0.9258 -0.4462 33 1 4.3048 1.4168 -0.0003 34 1 4.4595 -1.2661 0.0088 35 1 4.5011 -2.8811 -0.7604 36 1 4.4426 -2.7465 1.0179 37 1 4.9908 -4.9989 1.3259 38 1 5.6667 -4.8520 -0.3297 39 1 2.8648 -6.7498 2.3005 40 1 4.1149 -10.3215 2.9715 41 1 3.2864 -8.9647 3.7721 42 1 1.5117 -10.1089 1.8967 43 1 -1.2044 -12.0039 2.2954 44 1 1.5180 -5.1996 -0.3794 45 1 2.1742 -5.2067 1.2852 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098629097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:16 Heat of formation + Delta-G solvation = 188.119866 kcal Electronic energy + Delta-G solvation = -29230.504635 eV Core-core repulsion = 25095.879230 eV Total energy + Delta-G solvation = -4134.625404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.13755 -42.99562 -40.44030 -38.18001 -35.17166 -34.34538 -33.62373 -32.08495 -31.64732 -31.09345 -29.93680 -29.06489 -27.58498 -26.03851 -25.27296 -23.43148 -22.87201 -22.48616 -22.02071 -20.92290 -20.69114 -20.11346 -18.12421 -17.76853 -17.12370 -16.89702 -16.69810 -16.14119 -15.80595 -15.62811 -15.05582 -14.76167 -14.64691 -14.48069 -14.28461 -14.16476 -13.75378 -13.48005 -13.28559 -13.23906 -13.15005 -12.83310 -12.69952 -12.33463 -12.25462 -12.03308 -11.57996 -11.28915 -11.22583 -10.90358 -10.79270 -10.64195 -10.49266 -10.12621 -9.92530 -9.74458 -9.72942 -9.52918 -9.35002 -8.91680 -8.86128 -6.91698 -5.73058 -3.03104 0.73117 1.62990 1.72218 2.13245 2.16655 2.58438 2.65451 2.85397 3.47006 3.50865 3.51286 3.52548 3.72222 3.95731 4.07897 4.15820 4.30396 4.45200 4.60042 4.62948 4.71902 4.73427 4.78723 4.87971 5.02846 5.06054 5.10682 5.15129 5.19024 5.19709 5.26778 5.28659 5.45784 5.48873 5.61802 5.77832 5.97437 6.16883 6.21030 6.35729 6.62222 6.66119 6.69962 6.75597 7.39258 7.59309 7.71141 8.43986 8.76696 9.55710 10.11020 10.46786 11.49528 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.015242 B = 0.002120 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.607705 B =13206.415955 C =14476.633284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.255 5.255 3 N -0.275 5.275 4 C -0.004 4.004 5 C -0.198 4.198 6 C -0.036 4.036 7 C 0.611 3.389 8 O -0.530 6.530 9 N -0.603 5.603 10 C 0.094 3.906 11 C -0.141 4.141 12 C 0.136 3.864 13 H 0.131 0.869 14 N -0.293 5.293 15 C -0.046 4.046 16 C 0.000 4.000 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.910 3.090 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.250 5.250 28 N -0.091 5.091 29 C 0.102 3.898 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.116 0.884 33 H 0.188 0.812 34 H 0.171 0.829 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.188 0.812 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.102 0.898 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.622 28.333 -6.337 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.043 5.043 3 N -0.108 5.108 4 C -0.179 4.179 5 C -0.226 4.226 6 C -0.165 4.165 7 C 0.400 3.600 8 O -0.406 6.406 9 N -0.338 5.338 10 C -0.028 4.028 11 C -0.180 4.180 12 C 0.032 3.968 13 H 0.149 0.851 14 N -0.087 5.087 15 C -0.195 4.195 16 C -0.137 4.137 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.118 5.118 28 N -0.069 5.069 29 C -0.021 4.021 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.205 0.795 34 H 0.188 0.812 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.205 0.795 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.120 0.880 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.649 28.518 -7.549 31.038 hybrid contribution -0.539 -0.646 1.333 1.576 sum 9.110 27.872 -6.216 29.974 Atomic orbital electron populations 1.22486 0.72210 1.06594 1.04934 1.45673 1.08067 1.01532 1.48989 1.73257 1.04532 1.13538 1.19502 1.23646 0.93495 0.95060 1.05711 1.22772 0.95989 0.95789 1.08088 1.21146 0.91652 0.89168 1.14501 1.16440 0.84576 0.82453 0.76568 1.90833 1.15793 1.83906 1.50093 1.47788 1.06971 1.06053 1.72960 1.22528 0.79308 0.97642 1.03369 1.23169 0.98272 0.92437 1.04162 1.22561 0.96314 0.77419 1.00542 0.85072 1.46999 1.41202 1.09248 1.11236 1.23314 1.07939 0.98269 0.90025 1.22481 1.01556 0.92637 0.97057 1.18965 0.90465 0.91894 0.88393 1.42296 1.18439 1.52641 1.23684 1.19174 1.01652 1.17945 0.98445 0.90929 1.24763 0.97585 1.00775 0.97757 1.69667 1.14607 1.46776 1.26938 0.86233 0.77927 0.80872 0.80922 1.21243 1.21738 1.21167 1.75118 1.16292 1.18775 1.01566 1.78307 1.17755 0.89147 1.21693 1.22529 0.97114 0.78779 1.03691 0.89550 0.88699 0.86556 0.79462 0.81197 0.89515 0.89301 0.88795 0.87870 0.79522 0.94260 0.94471 0.78085 0.93434 0.87995 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.01 59.85 0.66 1.20 16 2 N -0.25 -2.35 3.75 -63.88 -0.24 -2.59 16 3 N -0.28 -2.56 11.90 30.59 0.36 -2.20 16 4 C 0.00 -0.03 12.03 -17.42 -0.21 -0.24 16 5 C -0.20 -1.26 9.44 -38.98 -0.37 -1.62 16 6 C -0.04 -0.32 6.92 -82.06 -0.57 -0.89 16 7 C 0.61 6.04 7.82 -12.64 -0.10 5.94 16 8 O -0.53 -6.80 14.82 5.25 0.08 -6.72 16 9 N -0.60 -4.55 3.33 -171.89 -0.57 -5.12 16 10 C 0.09 0.38 5.01 -3.06 -0.02 0.37 16 11 C -0.14 -0.69 6.64 -24.90 -0.17 -0.85 16 12 C 0.14 1.09 4.08 -65.79 -0.27 0.83 16 13 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 14 N -0.29 -3.74 3.37 -52.69 -0.18 -3.92 16 15 C -0.05 -0.64 10.59 -17.05 -0.18 -0.82 16 16 C 0.00 0.00 6.62 -82.78 -0.55 -0.54 16 17 C 0.23 4.78 6.82 -5.19 -0.04 4.75 16 18 N -0.73 -18.88 5.60 -61.08 -0.34 -19.23 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.37 5.50 -17.44 -0.10 -0.46 16 22 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 23 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 27 N -0.25 -4.92 12.41 33.29 0.41 -4.51 16 28 N -0.09 -1.51 13.17 60.35 0.79 -0.72 16 29 C 0.10 0.87 6.36 -2.53 -0.02 0.86 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.12 0.93 5.97 -51.93 -0.31 0.61 16 33 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.17 0.54 4.66 -52.49 -0.24 0.29 16 35 H 0.09 0.22 7.00 -51.93 -0.36 -0.15 16 36 H 0.09 0.26 6.90 -51.93 -0.36 -0.10 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.19 2.06 7.02 -52.48 -0.37 1.70 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.39 10.85 7.66 -40.82 -0.31 10.54 16 43 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 44 H 0.10 1.01 7.99 -51.93 -0.41 0.60 16 45 H 0.09 0.79 6.38 -51.93 -0.33 0.46 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -37.80 375.87 -6.01 -43.81 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.63 Total: 4.49 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -2.06 Total: 1.56 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: 0.97 Total: -66.34 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.08 Total: -6.72 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.80 -6.01 -43.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098629097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 231.932 kcal (2) G-P(sol) polarization free energy of solvation -37.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds