Wall clock time and date at job start Wed Apr 1 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35032 * 124.88368 * 2 1 4 4 C 1.35368 * 107.22639 * 179.97438 * 3 2 1 5 5 C 1.41510 * 105.50118 * 0.02562 * 4 3 2 6 6 C 1.47707 * 126.51365 * 179.97438 * 5 4 3 7 7 O 1.21574 * 120.00546 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.47031 * 125.64691 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26879 * 181.01415 * 9 8 6 11 11 C 1.55156 * 102.94181 * 22.19441 * 10 9 8 12 12 H 1.08997 * 111.00714 * 82.61349 * 11 10 9 13 13 N 1.46503 * 110.99889 * 206.42102 * 11 10 9 14 14 C 1.35315 * 125.86905 * 85.00366 * 13 11 10 15 15 C 1.35349 * 106.17664 * 179.97438 * 14 13 11 16 16 C 1.50696 * 126.75114 * 179.97438 * 15 14 13 17 17 N 1.46507 * 109.47009 * 95.00302 * 16 15 14 18 18 C 1.36933 * 120.00131 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99720 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99429 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00457 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47125 * 89.99650 * 22 20 18 24 24 H 1.48500 * 109.47213 * 210.00047 * 22 20 18 25 25 H 1.48497 * 109.46743 * 329.99985 * 22 20 18 26 26 N 1.33765 * 106.49542 * 0.02562 * 15 14 13 27 27 N 1.28640 * 108.88866 * 359.73395 * 26 15 14 28 28 C 1.47422 * 125.65171 * 179.97438 * 8 6 5 29 29 N 1.28463 * 124.87985 * 180.24958 * 2 1 3 30 30 H 1.08997 * 109.47173 * 89.99570 * 1 2 3 31 31 H 1.08999 * 109.47203 * 210.00127 * 1 2 3 32 32 H 1.09002 * 109.46432 * 330.00049 * 1 2 3 33 33 H 1.07996 * 126.38726 * 359.97438 * 3 2 1 34 34 H 1.07997 * 127.25204 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.88059 * 61.59780 * 9 8 6 36 36 H 1.08994 * 109.87878 * 300.43060 * 9 8 6 37 37 H 1.09001 * 110.71763 * 140.55775 * 10 9 8 38 38 H 1.08997 * 110.72099 * 263.64813 * 10 9 8 39 39 H 1.08003 * 126.90655 * 0.02562 * 14 13 11 40 40 H 1.09000 * 109.47503 * 215.00028 * 16 15 14 41 41 H 1.08997 * 109.47422 * 335.00868 * 16 15 14 42 42 H 0.97008 * 119.99711 * 359.97438 * 17 16 15 43 43 H 0.97001 * 119.99580 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36378 * 37.07938 * 28 8 6 45 45 H 1.08998 * 110.37024 * 274.75654 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6971 0.0006 5 6 3.4740 -0.7170 0.0003 6 6 4.6272 -1.6399 0.0002 7 8 5.7597 -1.1978 -0.0001 8 7 4.4241 -2.9723 -0.0006 9 6 3.1137 -3.6392 -0.0019 10 6 3.3738 -5.1602 0.0237 11 6 4.8074 -5.2578 0.6091 12 1 4.7896 -5.2020 1.6975 13 7 5.4758 -6.4816 0.1598 14 6 6.1510 -6.6352 -1.0027 15 6 6.6025 -7.9111 -1.0109 16 6 7.4134 -8.5738 -2.0946 17 7 8.8375 -8.4843 -1.7626 18 6 9.7724 -9.0207 -2.6072 19 1 9.4598 -9.5101 -3.5179 20 6 11.1217 -8.9364 -2.2924 21 7 12.0203 -9.4525 -3.1041 22 14 11.6622 -8.0919 -0.7163 23 1 11.7224 -9.0880 0.3834 24 1 13.0053 -7.4897 -0.9129 25 1 10.6884 -7.0267 -0.3666 26 7 6.1863 -8.4686 0.1316 27 7 5.5260 -7.5940 0.8054 28 6 5.4787 -4.0023 -0.0013 29 7 2.1997 -1.0538 -0.0046 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.8906 2.1305 -0.0004 34 1 4.4109 1.3179 0.0004 35 1 2.5629 -3.3724 -0.9039 36 1 2.5473 -3.3451 0.8816 37 1 2.6571 -5.6631 0.6728 38 1 3.3366 -5.5748 -0.9837 39 1 6.3005 -5.8892 -1.7694 40 1 7.1243 -9.6216 -2.1754 41 1 7.2295 -8.0717 -3.0444 42 1 9.1183 -8.0444 -0.9449 43 1 12.9632 -9.3933 -2.8843 44 1 6.3198 -3.6845 0.6149 45 1 5.8093 -4.2062 -1.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098780465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:23 Heat of formation + Delta-G solvation = 188.611677 kcal Electronic energy + Delta-G solvation = -29110.349088 eV Core-core repulsion = 24975.745010 eV Total energy + Delta-G solvation = -4134.604078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.19453 -43.12339 -40.28764 -38.01060 -35.23704 -34.26892 -33.85317 -31.95308 -31.44659 -30.99634 -30.31336 -29.41220 -27.91208 -26.28906 -25.00663 -23.13028 -22.72565 -22.33871 -21.88771 -21.00807 -20.67370 -19.83745 -18.18083 -17.95521 -17.36691 -17.19175 -16.80150 -16.05728 -15.92503 -15.64586 -14.99384 -14.71163 -14.46000 -14.43275 -14.17627 -14.00219 -13.73201 -13.54537 -13.40802 -13.17019 -13.10106 -12.95997 -12.72637 -12.47885 -12.22108 -12.10616 -11.57507 -11.45153 -11.37744 -11.07436 -10.82811 -10.63907 -10.52071 -10.11736 -9.92121 -9.79710 -9.60359 -9.54419 -9.16470 -8.99963 -8.85072 -7.18711 -5.71231 -3.06796 1.07692 1.62706 1.66969 1.82351 2.02716 2.63328 2.77560 2.97842 3.45658 3.50461 3.52958 3.58181 3.77322 3.87163 4.22388 4.25225 4.28886 4.39106 4.39748 4.62119 4.66514 4.67461 4.68837 4.73642 5.05178 5.13228 5.14615 5.18168 5.23447 5.27709 5.32512 5.39889 5.44434 5.59717 5.64270 5.73980 5.77559 5.90681 6.18327 6.27699 6.58809 6.63738 6.70401 6.90662 7.30371 7.71716 8.03083 8.47482 8.70661 9.25549 9.98269 10.18247 11.46824 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.002144 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.580932 B =13057.404379 C =13999.504100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.285 5.285 3 C -0.018 4.018 4 C -0.176 4.176 5 C -0.015 4.015 6 C 0.623 3.377 7 O -0.522 6.522 8 N -0.608 5.608 9 C 0.115 3.885 10 C -0.141 4.141 11 C 0.134 3.866 12 H 0.130 0.870 13 N -0.291 5.291 14 C -0.044 4.044 15 C -0.008 4.008 16 C 0.237 3.763 17 N -0.749 5.749 18 C -0.243 4.243 19 H 0.093 0.907 20 C 0.007 3.993 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.279 1.279 26 N -0.252 5.252 27 N -0.090 5.090 28 C 0.101 3.899 29 N -0.258 5.258 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.190 0.810 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.363 0.637 43 H 0.259 0.741 44 H 0.099 0.901 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.154 24.704 7.567 40.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.073 5.073 3 C -0.160 4.160 4 C -0.203 4.203 5 C -0.174 4.174 6 C 0.410 3.590 7 O -0.395 6.395 8 N -0.344 5.344 9 C -0.008 4.008 10 C -0.180 4.180 11 C 0.031 3.969 12 H 0.147 0.853 13 N -0.085 5.085 14 C -0.194 4.194 15 C -0.146 4.146 16 C 0.109 3.891 17 N -0.396 5.396 18 C -0.373 4.373 19 H 0.111 0.889 20 C -0.189 4.189 21 N -0.581 5.581 22 Si 0.714 3.286 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.205 1.205 26 N -0.120 5.120 27 N -0.069 5.069 28 C -0.023 4.023 29 N -0.095 5.095 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.201 0.799 34 H 0.182 0.818 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.207 0.793 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.117 0.883 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -31.699 23.249 8.652 40.252 hybrid contribution 1.117 2.061 0.193 2.352 sum -30.582 25.310 8.844 40.670 Atomic orbital electron populations 1.22217 0.72955 1.05626 1.04663 1.45474 1.07932 1.03194 1.50735 1.22902 0.90883 0.93854 1.08351 1.21813 0.97545 0.93323 1.07664 1.21698 0.90462 0.93982 1.11280 1.16469 0.86832 0.79452 0.76233 1.90860 1.22623 1.76012 1.50052 1.48043 1.08067 1.04510 1.73732 1.22072 0.84900 0.90018 1.03813 1.23158 0.95149 0.96149 1.03544 1.22616 0.92478 0.80118 1.01734 0.85262 1.47060 1.36531 1.10938 1.13979 1.23396 1.02573 1.00522 0.92941 1.22520 1.02737 0.92171 0.97153 1.18922 0.82656 0.97469 0.90070 1.42656 1.00503 1.70445 1.25968 1.19034 0.86252 1.29676 1.02297 0.88886 1.24631 0.95633 1.00643 0.98013 1.69702 1.00615 1.50299 1.37465 0.86552 0.77715 0.79714 0.84592 1.20977 1.21715 1.20510 1.75117 1.09742 1.22709 1.04411 1.78302 1.18988 0.89047 1.20547 1.22475 0.91450 0.85394 1.02958 1.73589 1.02885 1.13961 1.19058 0.89523 0.88409 0.88463 0.79894 0.81822 0.89914 0.89987 0.88219 0.89123 0.79303 0.93407 0.93606 0.80462 0.93058 0.88256 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.05 11.31 59.85 0.68 0.73 16 2 N -0.28 -1.48 3.70 -68.12 -0.25 -1.74 16 3 C -0.02 -0.09 11.46 -17.17 -0.20 -0.28 16 4 C -0.18 -1.39 10.81 -39.36 -0.43 -1.82 16 5 C -0.01 -0.14 6.98 -82.76 -0.58 -0.72 16 6 C 0.62 7.26 7.86 -12.39 -0.10 7.16 16 7 O -0.52 -7.83 17.18 5.30 0.09 -7.74 16 8 N -0.61 -5.75 3.33 -171.68 -0.57 -6.33 16 9 C 0.12 0.77 5.54 -3.06 -0.02 0.75 16 10 C -0.14 -0.93 6.65 -24.90 -0.17 -1.10 16 11 C 0.13 1.22 4.12 -65.78 -0.27 0.95 16 12 H 0.13 1.07 8.14 -51.93 -0.42 0.64 16 13 N -0.29 -3.86 3.40 -52.68 -0.18 -4.04 16 14 C -0.04 -0.63 10.60 -17.05 -0.18 -0.81 16 15 C -0.01 -0.15 6.61 -82.78 -0.55 -0.69 16 16 C 0.24 4.84 6.82 -5.19 -0.04 4.80 16 17 N -0.75 -18.78 5.40 -61.08 -0.33 -19.11 16 18 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 20 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 21 N -0.93 -29.88 13.97 55.49 0.78 -29.11 16 22 Si 0.88 23.30 27.74 -169.99 -4.71 18.59 16 23 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.28 -7.05 6.52 56.52 0.37 -6.68 16 26 N -0.25 -4.90 12.41 33.28 0.41 -4.49 16 27 N -0.09 -1.51 13.17 60.35 0.79 -0.72 16 28 C 0.10 0.98 6.26 -2.53 -0.02 0.96 16 29 N -0.26 -2.02 9.50 33.42 0.32 -1.71 16 30 H 0.09 -0.03 8.14 -51.93 -0.42 -0.45 16 31 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.10 -0.17 8.13 -51.93 -0.42 -0.59 16 33 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 34 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.08 0.54 7.77 -51.93 -0.40 0.14 16 36 H 0.08 0.50 7.66 -51.93 -0.40 0.11 16 37 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.19 2.15 6.81 -52.48 -0.36 1.79 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.36 9.21 5.52 -40.82 -0.23 8.98 16 43 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 44 H 0.10 1.06 8.04 -51.93 -0.42 0.64 16 45 H 0.09 0.85 6.24 -51.93 -0.32 0.52 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -39.65 381.15 -5.96 -45.61 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.94 Total: 2.21 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.11 Total: 2.82 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: 0.97 Total: -67.23 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.74 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.71 Total: 18.59 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -39.65 -5.96 -45.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098780465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.223 kcal (2) G-P(sol) polarization free energy of solvation -39.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds