Wall clock time and date at job start Wed Apr 1 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.35032 * 124.88368 * 2 1 4 4 C 1.35368 * 107.22639 * 179.97438 * 3 2 1 5 5 C 1.41510 * 105.50118 * 0.02562 * 4 3 2 6 6 C 1.47707 * 126.51365 * 179.97438 * 5 4 3 7 7 O 1.21574 * 120.00546 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99891 * 180.02562 * 6 5 4 9 9 C 1.47031 * 125.64691 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26879 * 181.01415 * 9 8 6 11 11 C 1.55156 * 102.94181 * 22.19441 * 10 9 8 12 12 H 1.08997 * 111.00714 * 82.61349 * 11 10 9 13 13 N 1.46503 * 110.99889 * 206.42102 * 11 10 9 14 14 C 1.35315 * 125.86905 * 85.00366 * 13 11 10 15 15 C 1.35349 * 106.17664 * 179.97438 * 14 13 11 16 16 C 1.50696 * 126.75114 * 179.97438 * 15 14 13 17 17 N 1.46507 * 109.47009 * 95.00302 * 16 15 14 18 18 C 1.36933 * 120.00131 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38813 * 119.99720 * 180.02562 * 18 17 16 21 21 N 1.31624 * 119.99429 * 179.97438 * 20 18 17 22 22 Si 1.86796 * 120.00457 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47125 * 89.99650 * 22 20 18 24 24 H 1.48500 * 109.47213 * 210.00047 * 22 20 18 25 25 H 1.48497 * 109.46743 * 329.99985 * 22 20 18 26 26 N 1.33765 * 106.49542 * 0.02562 * 15 14 13 27 27 N 1.28640 * 108.88866 * 359.73395 * 26 15 14 28 28 C 1.47422 * 125.65171 * 179.97438 * 8 6 5 29 29 N 1.28463 * 124.87985 * 180.24958 * 2 1 3 30 30 H 1.08997 * 109.47173 * 89.99570 * 1 2 3 31 31 H 1.08999 * 109.47203 * 210.00127 * 1 2 3 32 32 H 1.09002 * 109.46432 * 330.00049 * 1 2 3 33 33 H 1.07996 * 126.38726 * 359.97438 * 3 2 1 34 34 H 1.07997 * 127.25204 * 179.97438 * 4 3 2 35 35 H 1.08998 * 109.88059 * 61.59780 * 9 8 6 36 36 H 1.08994 * 109.87878 * 300.43060 * 9 8 6 37 37 H 1.09001 * 110.71763 * 140.55775 * 10 9 8 38 38 H 1.08997 * 110.72099 * 263.64813 * 10 9 8 39 39 H 1.08003 * 126.90655 * 0.02562 * 14 13 11 40 40 H 1.09000 * 109.47503 * 215.00028 * 16 15 14 41 41 H 1.08997 * 109.47422 * 335.00868 * 16 15 14 42 42 H 0.97008 * 119.99711 * 359.97438 * 17 16 15 43 43 H 0.97001 * 119.99580 * 179.97438 * 21 20 18 44 44 H 1.09000 * 110.36378 * 37.07938 * 28 8 6 45 45 H 1.08998 * 110.37024 * 274.75654 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2373 1.1077 0.0000 4 6 3.5272 0.6971 0.0006 5 6 3.4740 -0.7170 0.0003 6 6 4.6272 -1.6399 0.0002 7 8 5.7597 -1.1978 -0.0001 8 7 4.4241 -2.9723 -0.0006 9 6 3.1137 -3.6392 -0.0019 10 6 3.3738 -5.1602 0.0237 11 6 4.8074 -5.2578 0.6091 12 1 4.7896 -5.2020 1.6975 13 7 5.4758 -6.4816 0.1598 14 6 6.1510 -6.6352 -1.0027 15 6 6.6025 -7.9111 -1.0109 16 6 7.4134 -8.5738 -2.0946 17 7 8.8375 -8.4843 -1.7626 18 6 9.7724 -9.0207 -2.6072 19 1 9.4598 -9.5101 -3.5179 20 6 11.1217 -8.9364 -2.2924 21 7 12.0203 -9.4525 -3.1041 22 14 11.6622 -8.0919 -0.7163 23 1 11.7224 -9.0880 0.3834 24 1 13.0053 -7.4897 -0.9129 25 1 10.6884 -7.0267 -0.3666 26 7 6.1863 -8.4686 0.1316 27 7 5.5260 -7.5940 0.8054 28 6 5.4787 -4.0023 -0.0013 29 7 2.1997 -1.0538 -0.0046 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.8906 2.1305 -0.0004 34 1 4.4109 1.3179 0.0004 35 1 2.5629 -3.3724 -0.9039 36 1 2.5473 -3.3451 0.8816 37 1 2.6571 -5.6631 0.6728 38 1 3.3366 -5.5748 -0.9837 39 1 6.3005 -5.8892 -1.7694 40 1 7.1243 -9.6216 -2.1754 41 1 7.2295 -8.0717 -3.0444 42 1 9.1183 -8.0444 -0.9449 43 1 12.9632 -9.3933 -2.8843 44 1 6.3198 -3.6845 0.6149 45 1 5.8093 -4.2062 -1.0198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098780465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:22 Heat of formation + Delta-G solvation = 158.477855 kcal Electronic energy + Delta-G solvation = -29111.655789 eV Core-core repulsion = 24975.745010 eV Total energy + Delta-G solvation = -4135.910778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -44.38695 -43.61776 -41.07411 -38.87361 -37.01496 -35.36045 -34.36795 -33.82516 -32.15487 -32.04110 -31.58789 -30.13407 -28.36354 -27.95624 -25.80897 -24.39271 -24.01361 -23.23968 -22.37712 -22.29882 -21.69296 -20.51488 -19.91857 -18.73528 -18.47434 -17.77639 -17.34217 -17.17762 -16.73612 -16.53216 -16.38036 -16.14831 -15.73706 -15.55373 -14.99784 -14.80494 -14.73730 -14.44778 -14.25153 -14.14035 -13.99792 -13.82848 -13.54264 -13.39684 -13.32400 -13.12970 -12.98688 -12.89237 -12.63705 -12.14377 -12.11895 -11.94700 -11.88899 -11.82457 -11.46897 -11.08258 -11.01645 -10.31232 -10.26344 -10.13546 -9.85146 -9.32400 -8.03082 -5.36081 0.43364 0.50612 1.01814 1.17509 1.34106 1.38560 1.38959 1.45356 1.54967 1.92695 2.23713 2.46661 2.82405 3.13976 3.26433 3.29389 3.37351 3.59130 3.77628 3.82142 3.88256 3.92002 4.00322 4.04256 4.18413 4.31117 4.41709 4.44506 4.47542 4.53202 4.65004 4.72755 4.74335 4.75746 4.79584 4.80277 4.91218 5.02134 5.08072 5.12980 5.33263 5.56468 5.75089 5.86896 6.16545 6.20618 6.73059 6.99085 7.05001 7.42950 7.80145 7.99481 9.17960 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.002144 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.580932 B =13057.404379 C =13999.504100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.278 5.278 3 C 0.003 3.997 4 C -0.207 4.207 5 C -0.047 4.047 6 C 0.617 3.383 7 O -0.570 6.570 8 N -0.606 5.606 9 C 0.122 3.878 10 C -0.128 4.128 11 C 0.131 3.869 12 H 0.142 0.858 13 N -0.275 5.275 14 C -0.021 4.021 15 C -0.035 4.035 16 C 0.238 3.762 17 N -0.754 5.754 18 C -0.229 4.229 19 H 0.070 0.930 20 C -0.058 4.058 21 N -0.978 5.978 22 Si 0.948 3.052 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.261 1.261 26 N -0.291 5.291 27 N -0.099 5.099 28 C 0.100 3.900 29 N -0.262 5.262 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.127 0.873 33 H 0.226 0.774 34 H 0.158 0.842 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.093 0.907 39 H 0.221 0.779 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.362 0.638 43 H 0.258 0.742 44 H 0.085 0.915 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.678 27.184 8.589 44.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.067 5.067 3 C -0.140 4.140 4 C -0.235 4.235 5 C -0.205 4.205 6 C 0.406 3.594 7 O -0.448 6.448 8 N -0.339 5.339 9 C 0.000 4.000 10 C -0.166 4.166 11 C 0.029 3.971 12 H 0.160 0.840 13 N -0.068 5.068 14 C -0.172 4.172 15 C -0.173 4.173 16 C 0.111 3.889 17 N -0.399 5.399 18 C -0.360 4.360 19 H 0.087 0.913 20 C -0.250 4.250 21 N -0.629 5.629 22 Si 0.776 3.224 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.186 1.186 26 N -0.158 5.158 27 N -0.078 5.078 28 C -0.024 4.024 29 N -0.101 5.101 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.145 0.855 33 H 0.242 0.758 34 H 0.176 0.824 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.238 0.762 40 H 0.056 0.944 41 H 0.085 0.915 42 H 0.194 0.806 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -35.328 25.720 9.700 44.762 hybrid contribution 1.971 1.365 -0.165 2.403 sum -33.356 27.084 9.536 44.013 Atomic orbital electron populations 1.22658 0.70116 1.07451 1.06132 1.45990 1.09461 1.02694 1.48580 1.23443 0.89628 0.95373 1.05597 1.22003 0.99084 0.92888 1.09516 1.21558 0.90686 0.94358 1.13890 1.16845 0.86905 0.80156 0.75504 1.90815 1.24492 1.76943 1.52541 1.48085 1.09057 1.04032 1.72741 1.22162 0.83648 0.89596 1.04623 1.23158 0.93476 0.96105 1.03907 1.22937 0.93553 0.78042 1.02570 0.84047 1.47314 1.35257 1.11138 1.13108 1.23712 1.00569 0.99577 0.93361 1.22205 1.04425 0.93678 0.97010 1.18940 0.80428 0.97596 0.91943 1.42697 1.01977 1.70015 1.25247 1.19057 0.87110 1.28116 1.01692 0.91254 1.25364 0.95888 1.02274 1.01433 1.69853 1.00862 1.52519 1.39663 0.85512 0.77457 0.78959 0.80443 1.21143 1.21681 1.18630 1.75063 1.11148 1.24327 1.05280 1.78216 1.19152 0.89781 1.20623 1.22431 0.91407 0.85688 1.02875 1.73512 1.02198 1.15118 1.19266 0.88165 0.87916 0.85461 0.75787 0.82415 0.89264 0.88998 0.86253 0.88885 0.76235 0.94361 0.91471 0.80567 0.93270 0.89650 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.20 11.31 127.77 1.44 1.24 16 2 N -0.28 -2.07 3.70 -369.44 -1.37 -3.44 16 3 C 0.00 0.02 11.46 83.54 0.96 0.97 16 4 C -0.21 -3.16 10.81 22.41 0.24 -2.92 16 5 C -0.05 -0.90 6.98 42.46 0.30 -0.60 16 6 C 0.62 14.51 7.86 86.75 0.68 15.20 16 7 O -0.57 -17.89 17.18 -3.95 -0.07 -17.96 16 8 N -0.61 -10.82 3.33 -815.35 -2.71 -13.54 16 9 C 0.12 1.34 5.54 86.73 0.48 1.82 16 10 C -0.13 -1.30 6.65 31.78 0.21 -1.09 16 11 C 0.13 2.08 4.12 46.38 0.19 2.27 16 12 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 13 N -0.27 -6.67 3.40 -320.59 -1.09 -7.76 16 14 C -0.02 -0.55 10.60 83.49 0.89 0.34 16 15 C -0.03 -1.23 6.61 41.60 0.28 -0.95 16 16 C 0.24 9.55 6.82 85.63 0.58 10.14 16 17 N -0.75 -37.39 5.40 -347.17 -1.87 -39.26 16 18 C -0.23 -13.42 10.47 84.03 0.88 -12.54 16 19 H 0.07 4.32 8.06 -2.91 -0.02 4.30 16 20 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 21 N -0.98 -63.95 13.97 21.65 0.30 -63.65 16 22 Si 0.95 48.44 27.74 68.60 1.90 50.34 16 23 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 25 H -0.26 -12.43 6.52 99.48 0.65 -11.78 16 26 N -0.29 -11.08 12.41 -48.61 -0.60 -11.68 16 27 N -0.10 -3.17 13.17 37.02 0.49 -2.68 16 28 C 0.10 1.80 6.26 86.85 0.54 2.35 16 29 N -0.26 -3.61 9.50 -48.17 -0.46 -4.07 16 30 H 0.10 -0.47 8.14 -2.39 -0.02 -0.48 16 31 H 0.10 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.13 -1.06 8.13 -2.39 -0.02 -1.08 16 33 H 0.23 -0.51 8.06 -2.91 -0.02 -0.53 16 34 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.09 0.93 7.77 -2.39 -0.02 0.92 16 36 H 0.09 0.88 7.66 -2.39 -0.02 0.86 16 37 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.22 4.30 6.81 -2.91 -0.02 4.28 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.36 17.96 5.52 -92.70 -0.51 17.45 16 43 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 44 H 0.09 1.80 8.04 -2.39 -0.02 1.78 16 45 H 0.09 1.59 6.24 -2.39 -0.01 1.57 16 Total: -1.00 -89.07 381.15 3.13 -85.94 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.46 Total: 14.57 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 8.14 Total: 13.18 kcal Atomic # 7 Polarization: -138.76 SS G_CDS: -7.31 Total: -146.08 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.07 Total: -17.96 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.90 Total: 50.34 kcal Total: -89.07 3.13 -85.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098780465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.421 kcal (2) G-P(sol) polarization free energy of solvation -89.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds