Wall clock time and date at job start Wed Apr 1 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47334 * 2 1 4 4 C 1.50704 * 109.47153 * 239.99761 * 2 1 3 5 5 O 1.21279 * 119.99739 * 272.03085 * 4 2 1 6 6 N 1.34777 * 119.99959 * 92.03583 * 4 2 1 7 7 C 1.47581 * 134.49084 * 354.83008 * 6 4 2 8 8 C 1.53945 * 86.11772 * 155.36140 * 7 6 4 9 9 N 1.46490 * 113.74662 * 137.95093 * 8 7 6 10 10 C 1.35318 * 125.87053 * 275.32666 * 9 8 7 11 11 C 1.35346 * 106.17707 * 180.11558 * 10 9 8 12 12 C 1.50699 * 126.75170 * 179.85128 * 11 10 9 13 13 N 1.46505 * 109.47050 * 94.70961 * 12 11 10 14 14 C 1.36935 * 119.99786 * 179.72591 * 13 12 11 15 15 H 1.08001 * 120.00328 * 0.27324 * 14 13 12 16 16 C 1.38817 * 120.00074 * 180.27943 * 14 13 12 17 17 N 1.31621 * 119.99631 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00234 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46951 * 59.99962 * 18 16 14 20 20 H 1.48501 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47274 * 299.99883 * 18 16 14 22 22 N 1.33768 * 106.49881 * 359.58982 * 11 10 9 23 23 N 1.28638 * 108.88322 * 0.26143 * 22 11 10 24 24 C 1.47583 * 134.49417 * 174.82874 * 6 4 2 25 25 N 1.46504 * 109.47184 * 119.99878 * 2 1 3 26 26 C 1.34949 * 126.03643 * 34.71348 * 25 2 1 27 27 C 1.35309 * 107.74454 * 179.84014 * 26 25 2 28 28 C 1.39868 * 107.91961 * 0.42694 * 27 26 25 29 29 N 1.30826 * 108.20401 * 359.73480 * 28 27 26 30 30 H 1.08996 * 109.47294 * 295.32535 * 1 2 3 31 31 H 1.09002 * 109.46597 * 55.32348 * 1 2 3 32 32 H 1.09001 * 109.46595 * 175.31999 * 1 2 3 33 33 H 1.08996 * 113.77213 * 41.05319 * 7 6 4 34 34 H 1.09003 * 113.76480 * 269.66033 * 7 6 4 35 35 H 1.08998 * 113.73948 * 269.15585 * 8 7 6 36 36 H 1.08003 * 126.90829 * 359.96918 * 10 9 8 37 37 H 1.09005 * 109.47029 * 334.71670 * 12 11 10 38 38 H 1.09003 * 109.47539 * 214.71105 * 12 11 10 39 39 H 0.96994 * 119.99861 * 0.02562 * 13 12 11 40 40 H 0.96995 * 119.99847 * 180.02562 * 17 16 14 41 41 H 1.08998 * 113.76874 * 90.33615 * 24 6 4 42 42 H 1.09000 * 113.76385 * 318.94255 * 24 6 4 43 43 H 1.08007 * 126.12505 * 0.02562 * 26 25 2 44 44 H 1.08004 * 126.03848 * 180.15747 * 27 26 25 45 45 H 1.08003 * 125.89253 * 179.71563 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.1994 -1.9116 -1.2114 6 7 2.2961 -0.0111 -2.3520 7 6 2.1240 1.3976 -2.7569 8 6 3.2642 1.1399 -3.7585 9 7 3.0344 1.7312 -5.0789 10 6 2.3273 1.1698 -6.0869 11 6 2.3719 2.0496 -7.1144 12 6 1.7357 1.8852 -8.4706 13 7 0.4225 2.5347 -8.4760 14 6 -0.3439 2.5200 -9.6107 15 1 0.0177 2.0257 -10.5003 16 6 -1.5857 3.1404 -9.6176 17 7 -2.0265 3.7425 -8.5334 18 14 -2.6309 3.1209 -11.1656 19 1 -2.9296 1.7162 -11.5435 20 1 -3.9020 3.8463 -10.9138 21 1 -1.8923 3.7843 -12.2700 22 7 3.0869 3.0965 -6.6874 23 7 3.4649 2.8768 -5.4776 24 6 2.8730 -0.3463 -3.6684 25 7 2.0184 -0.6906 1.1962 26 6 1.4373 -1.7525 1.7927 27 6 2.1966 -2.0927 2.8597 28 6 3.2734 -1.2023 2.9231 29 7 3.1676 -0.3615 1.9264 30 1 -0.3633 0.4396 0.9289 31 1 -0.3632 0.5847 -0.8452 32 1 -0.3632 -1.0243 -0.0839 33 1 2.3789 2.1136 -1.9756 34 1 1.1633 1.6049 -3.2285 35 1 4.2552 1.3594 -3.3613 36 1 1.8296 0.2113 -6.0748 37 1 1.6170 0.8241 -8.6900 38 1 2.3711 2.3440 -9.2281 39 1 0.0979 2.9790 -7.6772 40 1 -2.8944 4.1757 -8.5381 41 1 2.1325 -0.6514 -4.4077 42 1 3.7260 -1.0227 -3.6147 43 1 0.5304 -2.2447 1.4736 44 1 2.0028 -2.9053 3.5444 45 1 4.0567 -1.2079 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105169788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:04 Heat of formation + Delta-G solvation = 217.264090 kcal Electronic energy + Delta-G solvation = -28956.229021 eV Core-core repulsion = 24822.867406 eV Total energy + Delta-G solvation = -4133.361616 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.20770 -41.75230 -40.74896 -38.59299 -35.08933 -35.02654 -33.59603 -31.91465 -30.62184 -30.19134 -30.01504 -29.29323 -27.21998 -25.92202 -25.41016 -23.91833 -22.87631 -21.75715 -21.39291 -20.91479 -20.63675 -19.59356 -18.26120 -17.85535 -17.79103 -17.09380 -16.61446 -15.96584 -15.53590 -15.13651 -14.93524 -14.72754 -14.61480 -14.32880 -13.97899 -13.93251 -13.76734 -13.44770 -13.29824 -13.20018 -13.06215 -12.91975 -12.77647 -12.68245 -12.34344 -12.10355 -11.86268 -11.34701 -11.07175 -10.94078 -10.83500 -10.75020 -10.50789 -10.16574 -10.00664 -9.78633 -9.76542 -9.50433 -8.97304 -8.95039 -8.90357 -6.96068 -5.77802 -3.07454 1.30042 1.63319 1.70633 1.82183 2.10396 2.53611 2.56393 2.80207 3.28414 3.43979 3.48473 3.49486 3.52977 3.91537 3.92582 4.17405 4.21485 4.44288 4.53162 4.59727 4.60705 4.66981 4.75934 4.81110 4.85902 4.87476 5.00185 5.13620 5.18046 5.19990 5.31044 5.39878 5.45218 5.56845 5.68390 5.70423 6.12178 6.27060 6.30837 6.55205 6.58596 6.60214 6.71584 6.82210 7.30429 7.38624 7.67583 8.39532 8.71423 9.51456 10.06265 10.42226 11.44860 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.001976 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.879889 B =14164.176421 C =15121.781090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.153 3.847 3 H 0.123 0.877 4 C 0.537 3.463 5 O -0.515 6.515 6 N -0.640 5.640 7 C 0.093 3.907 8 C 0.115 3.885 9 N -0.296 5.296 10 C -0.046 4.046 11 C 0.001 3.999 12 C 0.231 3.769 13 N -0.725 5.725 14 C -0.241 4.241 15 H 0.073 0.927 16 C -0.013 4.013 17 N -0.933 5.933 18 Si 0.910 3.090 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 N -0.249 5.249 23 N -0.090 5.090 24 C 0.108 3.892 25 N -0.364 5.364 26 C 0.077 3.923 27 C -0.276 4.276 28 C 0.051 3.949 29 N -0.298 5.298 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.147 0.853 36 H 0.189 0.811 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.172 0.828 44 H 0.149 0.851 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 -11.348 23.339 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.046 3.954 3 H 0.141 0.859 4 C 0.324 3.676 5 O -0.389 6.389 6 N -0.378 5.378 7 C -0.030 4.030 8 C 0.011 3.989 9 N -0.091 5.091 10 C -0.196 4.196 11 C -0.136 4.136 12 C 0.102 3.898 13 N -0.370 5.370 14 C -0.372 4.372 15 H 0.091 0.909 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.741 3.259 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.212 1.212 22 N -0.116 5.116 23 N -0.068 5.068 24 C -0.016 4.016 25 N -0.146 5.146 26 C -0.069 4.069 27 C -0.305 4.305 28 C -0.136 4.136 29 N -0.118 5.118 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.165 0.835 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.219 0.781 40 H 0.065 0.935 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.189 0.811 44 H 0.167 0.833 45 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 9.854 -9.832 23.060 26.936 hybrid contribution -1.720 -1.536 -0.327 2.329 sum 8.135 -11.368 22.733 26.687 Atomic orbital electron populations 1.22140 0.89723 1.04802 1.05182 1.20968 0.96684 0.97275 0.80464 0.85905 1.20378 0.77185 0.87085 0.82998 1.90783 1.51269 1.13739 1.83061 1.49592 1.63643 1.11844 1.12706 1.23836 0.99408 0.83302 0.96480 1.23619 1.02043 0.93743 0.79478 1.47086 1.35865 1.14234 1.11899 1.23339 1.03833 1.03560 0.88823 1.22496 1.00828 0.91105 0.99219 1.18979 0.87391 0.96764 0.86672 1.42284 1.14475 1.66083 1.14176 1.19185 0.97511 1.29381 0.91094 0.90908 1.24758 0.97987 1.00674 0.97461 1.69665 1.20338 1.40855 1.27230 0.86227 0.79671 0.77446 0.82577 1.21238 1.21741 1.21150 1.75137 1.12134 1.22579 1.01784 1.78312 1.20047 0.99885 1.08562 1.23601 0.99372 0.94532 0.84045 1.48274 1.20006 1.25045 1.21311 1.22481 0.99744 0.90266 0.94365 1.21512 0.99167 1.06360 1.03498 1.23922 0.99095 0.93614 0.96922 1.77377 1.02254 1.24442 1.07748 0.89609 0.88984 0.90496 0.87667 0.87445 0.83541 0.79422 0.94374 0.94197 0.78134 0.93463 0.87686 0.87778 0.81095 0.83330 0.79842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.70 37.16 0.32 -0.50 16 2 C 0.15 1.16 3.55 -69.08 -0.25 0.91 16 3 H 0.12 0.76 7.60 -51.93 -0.39 0.36 16 4 C 0.54 5.21 7.21 -10.98 -0.08 5.13 16 5 O -0.51 -6.98 17.19 5.56 0.10 -6.88 16 6 N -0.64 -4.96 3.61 -178.53 -0.64 -5.60 16 7 C 0.09 0.59 8.25 -2.97 -0.02 0.57 16 8 C 0.12 0.87 5.15 -70.15 -0.36 0.51 16 9 N -0.30 -3.57 3.54 -56.30 -0.20 -3.77 16 10 C -0.05 -0.61 10.72 -17.05 -0.18 -0.79 16 11 C 0.00 0.02 6.61 -82.78 -0.55 -0.53 16 12 C 0.23 4.64 6.82 -5.19 -0.04 4.60 16 13 N -0.73 -18.31 5.59 -61.08 -0.34 -18.65 16 14 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 15 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 16 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 17 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 18 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 N -0.25 -4.74 12.41 33.29 0.41 -4.33 16 23 N -0.09 -1.44 13.16 60.35 0.79 -0.64 16 24 C 0.11 0.76 8.20 -2.97 -0.02 0.74 16 25 N -0.36 -3.51 3.30 -55.99 -0.18 -3.69 16 26 C 0.08 0.65 10.29 -17.22 -0.18 0.48 16 27 C -0.28 -2.23 10.80 -40.02 -0.43 -2.66 16 28 C 0.05 0.45 12.02 -17.37 -0.21 0.24 16 29 N -0.30 -3.27 12.57 30.62 0.39 -2.88 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.41 7.40 -51.93 -0.38 0.03 16 33 H 0.11 0.46 7.85 -51.93 -0.41 0.05 16 34 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.15 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.19 1.89 6.72 -52.48 -0.35 1.54 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.39 10.44 7.66 -40.82 -0.31 10.13 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 41 H 0.11 0.70 6.31 -51.93 -0.33 0.37 16 42 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.17 1.04 7.39 -52.48 -0.39 0.65 16 44 H 0.15 0.85 8.06 -52.48 -0.42 0.42 16 45 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -38.24 389.31 -6.27 -44.51 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.92 Total: 4.82 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -2.24 Total: 1.45 kcal Atomic # 7 Polarization: -67.82 SS G_CDS: 0.95 Total: -66.88 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.10 Total: -6.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.24 -6.27 -44.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105169788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 261.774 kcal (2) G-P(sol) polarization free energy of solvation -38.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 217.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds