Wall clock time and date at job start Wed Apr 1 2020 03:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47334 * 2 1 4 4 C 1.50704 * 109.47153 * 239.99761 * 2 1 3 5 5 O 1.21279 * 119.99739 * 272.03085 * 4 2 1 6 6 N 1.34777 * 119.99959 * 92.03583 * 4 2 1 7 7 C 1.47581 * 134.49084 * 354.83008 * 6 4 2 8 8 C 1.53945 * 86.11772 * 155.36140 * 7 6 4 9 9 N 1.46490 * 113.74662 * 137.95093 * 8 7 6 10 10 C 1.35318 * 125.87053 * 275.32666 * 9 8 7 11 11 C 1.35346 * 106.17707 * 180.11558 * 10 9 8 12 12 C 1.50699 * 126.75170 * 179.85128 * 11 10 9 13 13 N 1.46505 * 109.47050 * 94.70961 * 12 11 10 14 14 C 1.36935 * 119.99786 * 179.72591 * 13 12 11 15 15 H 1.08001 * 120.00328 * 0.27324 * 14 13 12 16 16 C 1.38817 * 120.00074 * 180.27943 * 14 13 12 17 17 N 1.31621 * 119.99631 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 120.00234 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46951 * 59.99962 * 18 16 14 20 20 H 1.48501 * 109.47343 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47274 * 299.99883 * 18 16 14 22 22 N 1.33768 * 106.49881 * 359.58982 * 11 10 9 23 23 N 1.28638 * 108.88322 * 0.26143 * 22 11 10 24 24 C 1.47583 * 134.49417 * 174.82874 * 6 4 2 25 25 N 1.46504 * 109.47184 * 119.99878 * 2 1 3 26 26 C 1.34949 * 126.03643 * 34.71348 * 25 2 1 27 27 C 1.35309 * 107.74454 * 179.84014 * 26 25 2 28 28 C 1.39868 * 107.91961 * 0.42694 * 27 26 25 29 29 N 1.30826 * 108.20401 * 359.73480 * 28 27 26 30 30 H 1.08996 * 109.47294 * 295.32535 * 1 2 3 31 31 H 1.09002 * 109.46597 * 55.32348 * 1 2 3 32 32 H 1.09001 * 109.46595 * 175.31999 * 1 2 3 33 33 H 1.08996 * 113.77213 * 41.05319 * 7 6 4 34 34 H 1.09003 * 113.76480 * 269.66033 * 7 6 4 35 35 H 1.08998 * 113.73948 * 269.15585 * 8 7 6 36 36 H 1.08003 * 126.90829 * 359.96918 * 10 9 8 37 37 H 1.09005 * 109.47029 * 334.71670 * 12 11 10 38 38 H 1.09003 * 109.47539 * 214.71105 * 12 11 10 39 39 H 0.96994 * 119.99861 * 0.02562 * 13 12 11 40 40 H 0.96995 * 119.99847 * 180.02562 * 17 16 14 41 41 H 1.08998 * 113.76874 * 90.33615 * 24 6 4 42 42 H 1.09000 * 113.76385 * 318.94255 * 24 6 4 43 43 H 1.08007 * 126.12505 * 0.02562 * 26 25 2 44 44 H 1.08004 * 126.03848 * 180.15747 * 27 26 25 45 45 H 1.08003 * 125.89253 * 179.71563 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.1994 -1.9116 -1.2114 6 7 2.2961 -0.0111 -2.3520 7 6 2.1240 1.3976 -2.7569 8 6 3.2642 1.1399 -3.7585 9 7 3.0344 1.7312 -5.0789 10 6 2.3273 1.1698 -6.0869 11 6 2.3719 2.0496 -7.1144 12 6 1.7357 1.8852 -8.4706 13 7 0.4225 2.5347 -8.4760 14 6 -0.3439 2.5200 -9.6107 15 1 0.0177 2.0257 -10.5003 16 6 -1.5857 3.1404 -9.6176 17 7 -2.0265 3.7425 -8.5334 18 14 -2.6309 3.1209 -11.1656 19 1 -2.9296 1.7162 -11.5435 20 1 -3.9020 3.8463 -10.9138 21 1 -1.8923 3.7843 -12.2700 22 7 3.0869 3.0965 -6.6874 23 7 3.4649 2.8768 -5.4776 24 6 2.8730 -0.3463 -3.6684 25 7 2.0184 -0.6906 1.1962 26 6 1.4373 -1.7525 1.7927 27 6 2.1966 -2.0927 2.8597 28 6 3.2734 -1.2023 2.9231 29 7 3.1676 -0.3615 1.9264 30 1 -0.3633 0.4396 0.9289 31 1 -0.3632 0.5847 -0.8452 32 1 -0.3632 -1.0243 -0.0839 33 1 2.3789 2.1136 -1.9756 34 1 1.1633 1.6049 -3.2285 35 1 4.2552 1.3594 -3.3613 36 1 1.8296 0.2113 -6.0748 37 1 1.6170 0.8241 -8.6900 38 1 2.3711 2.3440 -9.2281 39 1 0.0979 2.9790 -7.6772 40 1 -2.8944 4.1757 -8.5381 41 1 2.1325 -0.6514 -4.4077 42 1 3.7260 -1.0227 -3.6147 43 1 0.5304 -2.2447 1.4736 44 1 2.0028 -2.9053 3.5444 45 1 4.0567 -1.2079 3.6666 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105169788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:03 Heat of formation + Delta-G solvation = 188.769982 kcal Electronic energy + Delta-G solvation = -28957.464619 eV Core-core repulsion = 24822.867406 eV Total energy + Delta-G solvation = -4134.597213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.34395 -42.38354 -41.43493 -39.34917 -36.79625 -35.66736 -34.80272 -33.58536 -31.63691 -31.29312 -30.82916 -29.95649 -27.97877 -27.41920 -26.07794 -24.86251 -24.63976 -22.63162 -22.12744 -21.99620 -21.44258 -20.22439 -19.41941 -18.88209 -18.49117 -18.38397 -17.50311 -16.85381 -16.60168 -16.30531 -15.97383 -15.65326 -15.61272 -15.28520 -15.11739 -15.03586 -14.57639 -14.48475 -14.32676 -13.99505 -13.94954 -13.70809 -13.48639 -13.44499 -13.35845 -12.98385 -12.82525 -12.73304 -12.64516 -12.50839 -12.11812 -11.86433 -11.83554 -11.71738 -11.44130 -11.05351 -10.92763 -10.44085 -10.24420 -10.14923 -9.57473 -8.99449 -7.91678 -5.21297 0.54217 0.64414 1.04234 1.12538 1.39922 1.45933 1.52732 1.54879 1.60870 1.85863 1.94052 2.60632 2.62809 2.91779 3.23611 3.40514 3.41291 3.51177 3.63959 3.69677 3.90454 3.94261 4.03577 4.09947 4.20995 4.25024 4.25865 4.33278 4.37572 4.47276 4.49027 4.55546 4.62501 4.65937 4.83395 4.87907 4.98121 5.13127 5.13186 5.18450 5.53279 5.60814 5.69225 5.98278 6.16496 6.28393 6.64041 6.72281 7.35711 7.49822 8.07129 8.32773 9.31816 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017217 B = 0.001976 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.879889 B =14164.176421 C =15121.781090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.150 3.850 3 H 0.136 0.864 4 C 0.536 3.464 5 O -0.560 6.560 6 N -0.637 5.637 7 C 0.100 3.900 8 C 0.110 3.890 9 N -0.277 5.277 10 C -0.018 4.018 11 C -0.032 4.032 12 C 0.233 3.767 13 N -0.738 5.738 14 C -0.244 4.244 15 H 0.083 0.917 16 C -0.076 4.076 17 N -0.971 5.971 18 Si 0.977 3.023 19 H -0.273 1.273 20 H -0.298 1.298 21 H -0.280 1.280 22 N -0.294 5.294 23 N -0.102 5.102 24 C 0.106 3.894 25 N -0.373 5.373 26 C 0.066 3.934 27 C -0.284 4.284 28 C 0.045 3.955 29 N -0.337 5.337 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.073 0.927 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.165 0.835 36 H 0.225 0.775 37 H 0.063 0.937 38 H 0.028 0.972 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.190 0.810 44 H 0.170 0.830 45 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.498 -12.573 24.070 28.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.154 0.846 4 C 0.324 3.676 5 O -0.437 6.437 6 N -0.373 5.373 7 C -0.023 4.023 8 C 0.008 3.992 9 N -0.071 5.071 10 C -0.169 4.169 11 C -0.171 4.171 12 C 0.106 3.894 13 N -0.380 5.380 14 C -0.375 4.375 15 H 0.101 0.899 16 C -0.268 4.268 17 N -0.621 5.621 18 Si 0.805 3.195 19 H -0.199 1.199 20 H -0.224 1.224 21 H -0.206 1.206 22 N -0.162 5.162 23 N -0.080 5.080 24 C -0.016 4.016 25 N -0.156 5.156 26 C -0.080 4.080 27 C -0.313 4.313 28 C -0.141 4.141 29 N -0.157 5.157 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.182 0.818 36 H 0.241 0.759 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.207 0.793 44 H 0.187 0.813 45 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.821 -11.053 23.786 28.007 hybrid contribution -1.582 -1.234 -0.468 2.060 sum 8.239 -12.286 23.319 27.615 Atomic orbital electron populations 1.22154 0.87936 1.04957 1.06229 1.21184 0.98000 0.97321 0.79051 0.84597 1.20759 0.76459 0.86635 0.83733 1.90758 1.53439 1.15634 1.83856 1.49574 1.62772 1.12391 1.12531 1.23930 0.98785 0.83025 0.96604 1.24036 1.03592 0.94031 0.77568 1.47350 1.33908 1.12965 1.12881 1.23683 1.02060 1.03650 0.87542 1.22251 1.02688 0.92583 0.99529 1.18990 0.85015 0.97176 0.88265 1.42476 1.16161 1.66369 1.13036 1.19645 0.97661 1.28170 0.92028 0.89895 1.25596 0.99574 1.01200 1.00464 1.69830 1.20530 1.42436 1.29322 0.85168 0.77507 0.77795 0.79005 1.19894 1.22450 1.20628 1.75070 1.13701 1.24092 1.03289 1.78206 1.20657 1.01419 1.07717 1.23719 0.99898 0.94047 0.83982 1.48468 1.19871 1.25520 1.21715 1.22940 1.00436 0.90123 0.94464 1.21877 0.98852 1.06769 1.03800 1.24451 0.99765 0.93118 0.96816 1.77303 1.03499 1.25957 1.08984 0.88636 0.87750 0.90825 0.85207 0.87440 0.81765 0.75899 0.91917 0.95367 0.79681 0.94091 0.86827 0.87108 0.79311 0.81292 0.77448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.70 71.98 0.63 -0.68 16 2 C 0.15 2.05 3.55 44.25 0.16 2.21 16 3 H 0.14 1.41 7.60 -2.39 -0.02 1.39 16 4 C 0.54 9.65 7.21 87.66 0.63 10.28 16 5 O -0.56 -14.79 17.19 -3.03 -0.05 -14.84 16 6 N -0.64 -8.41 3.61 -837.14 -3.02 -11.43 16 7 C 0.10 0.99 8.25 86.48 0.71 1.70 16 8 C 0.11 1.37 5.15 46.75 0.24 1.61 16 9 N -0.28 -6.10 3.54 -332.04 -1.18 -7.28 16 10 C -0.02 -0.45 10.72 83.49 0.89 0.45 16 11 C -0.03 -1.13 6.61 41.60 0.28 -0.85 16 12 C 0.23 9.27 6.82 85.63 0.58 9.85 16 13 N -0.74 -37.32 5.59 -347.15 -1.94 -39.26 16 14 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 15 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 16 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 17 N -0.97 -59.10 13.06 21.65 0.28 -58.81 16 18 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 N -0.29 -11.25 12.41 -48.60 -0.60 -11.85 16 23 N -0.10 -3.16 13.16 37.02 0.49 -2.67 16 24 C 0.11 1.23 8.20 86.48 0.71 1.94 16 25 N -0.37 -6.82 3.30 -331.04 -1.09 -7.92 16 26 C 0.07 1.05 10.29 83.54 0.86 1.91 16 27 C -0.28 -4.25 10.80 21.99 0.24 -4.01 16 28 C 0.04 0.74 12.02 85.24 1.02 1.76 16 29 N -0.34 -7.14 12.57 -57.03 -0.72 -7.86 16 30 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.68 7.40 -2.39 -0.02 0.66 16 33 H 0.13 0.72 7.85 -2.39 -0.02 0.70 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.16 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.22 3.69 6.72 -2.91 -0.02 3.67 16 37 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.37 20.48 7.66 -92.71 -0.71 19.77 16 40 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 41 H 0.11 1.15 6.31 -2.39 -0.02 1.13 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.19 2.08 7.39 -2.91 -0.02 2.06 16 44 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 45 H 0.21 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -84.39 389.31 2.78 -81.61 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.32 Total: 23.02 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: 8.26 Total: 9.79 kcal Atomic # 7 Polarization: -139.30 SS G_CDS: -7.78 Total: -147.08 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.05 Total: -14.84 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -84.39 2.78 -81.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105169788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.383 kcal (2) G-P(sol) polarization free energy of solvation -84.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 188.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds