Wall clock time and date at job start Wed Apr 1 2020 03:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 N 1.28446 * 125.18954 * 275.07046 * 3 2 1 5 5 C 1.30865 * 110.92742 * 180.28031 * 4 3 2 6 6 C 1.39674 * 107.86113 * 359.71099 * 5 4 3 7 7 C 1.36602 * 125.19558 * 94.85369 * 3 2 1 8 8 C 1.47167 * 126.88094 * 359.97438 * 7 3 2 9 9 O 1.21635 * 119.99691 * 4.52133 * 8 7 3 10 10 N 1.34773 * 120.00169 * 184.51706 * 8 7 3 11 11 C 1.47574 * 134.49228 * 174.65327 * 10 8 7 12 12 C 1.53945 * 86.11928 * 155.36363 * 11 10 8 13 13 N 1.46500 * 113.74554 * 137.95098 * 12 11 10 14 14 C 1.35310 * 125.86808 * 275.32615 * 13 12 11 15 15 C 1.35344 * 106.17513 * 180.11926 * 14 13 12 16 16 C 1.50702 * 126.75375 * 179.85242 * 15 14 13 17 17 N 1.46497 * 109.47124 * 94.71102 * 16 15 14 18 18 C 1.36940 * 120.00082 * 179.72687 * 17 16 15 19 19 H 1.07994 * 120.00009 * 0.27345 * 18 17 16 20 20 C 1.38810 * 119.99999 * 180.27718 * 18 17 16 21 21 N 1.31620 * 120.00045 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47112 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47631 * 119.99453 * 22 20 18 25 25 H 1.48506 * 109.47344 * 239.99808 * 22 20 18 26 26 N 1.33768 * 106.49708 * 359.59140 * 15 14 13 27 27 N 1.28635 * 108.88572 * 0.26438 * 26 15 14 28 28 C 1.47581 * 134.49240 * 354.65783 * 10 8 7 29 29 H 1.09002 * 109.47191 * 295.00791 * 1 2 3 30 30 H 1.08998 * 109.46996 * 54.99984 * 1 2 3 31 31 H 1.08995 * 109.47077 * 175.00627 * 1 2 3 32 32 H 1.08991 * 109.47155 * 240.00037 * 2 1 3 33 33 H 1.09005 * 109.47059 * 119.99674 * 2 1 3 34 34 H 1.08002 * 126.06960 * 179.68087 * 5 4 3 35 35 H 1.08002 * 127.31886 * 180.02562 * 6 5 4 36 36 H 1.08998 * 113.77472 * 41.05976 * 11 10 8 37 37 H 1.09007 * 113.76734 * 269.65988 * 11 10 8 38 38 H 1.09007 * 113.73901 * 269.15605 * 12 11 10 39 39 H 1.08003 * 126.91235 * 359.96723 * 14 13 12 40 40 H 1.09004 * 109.46918 * 334.71262 * 16 15 14 41 41 H 1.08999 * 109.47489 * 214.71029 * 16 15 14 42 42 H 0.97002 * 119.99975 * 0.02562 * 17 16 15 43 43 H 0.97004 * 120.00288 * 180.02562 * 21 20 18 44 44 H 1.08994 * 113.77344 * 90.33213 * 28 10 8 45 45 H 1.09001 * 113.76718 * 318.93803 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1777 2.1100 -1.0456 5 6 2.6329 3.2943 -0.7250 6 6 2.7761 3.3367 0.6637 7 6 2.3699 2.0920 1.1123 8 6 2.3301 1.6257 2.5076 9 8 2.0326 0.4726 2.7551 10 7 2.6235 2.4763 3.5110 11 6 2.5896 2.3892 4.9838 12 6 3.6542 3.5011 4.9696 13 7 3.4376 4.5382 5.9814 14 6 2.6340 5.6188 5.8496 15 6 2.7331 6.3063 7.0113 16 6 2.0292 7.5921 7.3610 17 7 0.7955 7.2905 8.0911 18 6 -0.0127 8.3093 8.5203 19 1 0.2571 9.3349 8.3166 20 6 -1.1788 8.0236 9.2171 21 7 -1.5079 6.7736 9.4649 22 14 -2.2816 9.4133 9.8018 23 1 -1.6927 10.7156 9.3988 24 1 -3.6273 9.2679 9.1909 25 1 -2.4013 9.3613 11.2811 26 7 3.5742 5.6168 7.7901 27 7 3.9741 4.5747 7.1508 28 6 3.1075 3.8688 3.5782 29 1 -0.3634 0.4344 0.9313 30 1 -0.3633 0.5894 -0.8418 31 1 -0.3633 -1.0237 -0.0895 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.8585 4.0963 -1.4123 35 1 3.1284 4.1649 1.2607 36 1 2.9520 1.4391 5.3762 37 1 1.6393 2.6965 5.4203 38 1 4.6783 3.1280 4.9560 39 1 2.0359 5.8814 4.9895 40 1 1.7871 8.1341 6.4468 41 1 2.6801 8.2046 7.9850 42 1 0.5532 6.3692 8.2744 43 1 -2.3230 6.5739 9.9515 44 1 2.3093 4.6107 3.6018 45 1 3.8833 4.1000 2.8483 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105219717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:23 Heat of formation + Delta-G solvation = 214.180304 kcal Electronic energy + Delta-G solvation = -29156.872608 eV Core-core repulsion = 25023.377269 eV Total energy + Delta-G solvation = -4133.495339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.21192 -42.96850 -40.69738 -38.38400 -35.11105 -34.91903 -33.61897 -31.96509 -31.67980 -30.22548 -29.99499 -29.30532 -27.13640 -25.92869 -24.89475 -24.17167 -22.91063 -22.77282 -21.73571 -21.01566 -20.63955 -19.73582 -18.21341 -17.82852 -17.19193 -17.03245 -16.52209 -16.22421 -15.82635 -15.30959 -15.12861 -14.89056 -14.55080 -14.52002 -14.29353 -13.97379 -13.70386 -13.39046 -13.37632 -13.20363 -13.02162 -12.88634 -12.66943 -12.52703 -12.10688 -11.82160 -11.77074 -11.33219 -11.22755 -10.91932 -10.84599 -10.67043 -10.44283 -10.08756 -9.97396 -9.77043 -9.73182 -9.50766 -9.40530 -8.95439 -8.89772 -6.94226 -5.76107 -3.05945 0.75001 1.54035 1.67180 2.10672 2.19707 2.44515 2.74808 2.82198 3.34862 3.44365 3.50011 3.50197 3.52351 4.02199 4.06190 4.20861 4.50686 4.52421 4.54597 4.58847 4.62732 4.71426 4.74565 4.80804 4.89929 4.99438 5.13080 5.15224 5.18177 5.24635 5.26913 5.39631 5.41299 5.58638 5.62506 5.72332 6.02568 6.13869 6.27729 6.32444 6.59585 6.61563 6.73019 6.83512 7.38192 7.64195 7.70010 8.40991 8.73467 9.53050 10.08120 10.43688 11.46614 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.012991 B = 0.002177 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.848524 B =12858.478869 C =13685.355787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.252 5.252 4 N -0.273 5.273 5 C -0.003 4.003 6 C -0.189 4.189 7 C -0.038 4.038 8 C 0.625 3.375 9 O -0.530 6.530 10 N -0.631 5.631 11 C 0.110 3.890 12 C 0.114 3.886 13 N -0.296 5.296 14 C -0.046 4.046 15 C 0.001 3.999 16 C 0.231 3.769 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.249 5.249 27 N -0.089 5.089 28 C 0.095 3.905 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.121 0.879 34 H 0.189 0.811 35 H 0.163 0.837 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.148 0.852 39 H 0.189 0.811 40 H 0.039 0.961 41 H 0.040 0.960 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.109 0.891 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.086 -11.799 -23.127 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.040 5.040 4 N -0.106 5.106 5 C -0.178 4.178 6 C -0.218 4.218 7 C -0.166 4.166 8 C 0.414 3.586 9 O -0.406 6.406 10 N -0.367 5.367 11 C -0.013 4.013 12 C 0.010 3.990 13 N -0.090 5.090 14 C -0.196 4.196 15 C -0.137 4.137 16 C 0.102 3.898 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.204 1.204 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.117 5.117 27 N -0.068 5.068 28 C -0.029 4.029 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.206 0.794 35 H 0.180 0.820 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.166 0.834 39 H 0.206 0.794 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.127 0.873 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.397 -13.940 -23.065 29.261 hybrid contribution -1.310 1.387 0.200 1.918 sum 10.087 -12.553 -22.864 27.966 Atomic orbital electron populations 1.22100 0.93252 1.03699 1.03271 1.22312 0.96423 0.76360 1.06203 1.45914 1.43984 1.12359 1.01775 1.73237 1.18500 1.05109 1.13713 1.23633 1.03781 0.95316 0.95067 1.22483 1.06758 0.96728 0.95870 1.21158 1.11674 0.94430 0.89323 1.16349 0.76144 0.84010 0.82119 1.90810 1.48778 1.17010 1.83995 1.49124 1.66999 1.13965 1.06597 1.23696 0.99183 0.99803 0.78608 1.23633 1.02611 0.87291 0.85441 1.47078 1.31217 1.18108 1.12622 1.23327 1.01906 0.90803 1.03582 1.22497 0.99517 1.00796 0.90844 1.18973 0.87665 0.87280 0.95848 1.42313 1.21107 1.07108 1.66561 1.19266 1.00783 0.88185 1.28822 0.90798 1.24763 0.98643 0.96297 1.01220 1.69688 1.25932 1.16548 1.45812 0.86094 0.80489 0.81185 0.78260 1.20441 1.21918 1.21844 1.75136 1.11680 1.00375 1.24494 1.78317 1.19617 1.17594 0.91227 1.23884 0.99567 0.84885 0.94556 0.91700 0.91609 0.89882 0.88284 0.86131 0.79445 0.81960 0.87596 0.87729 0.83445 0.79373 0.94373 0.94227 0.78120 0.93545 0.87288 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.11 0.82 6.70 -4.04 -0.03 0.79 16 3 N -0.25 -2.42 3.35 -57.14 -0.19 -2.61 16 4 N -0.27 -2.67 11.90 30.59 0.36 -2.30 16 5 C 0.00 -0.02 12.03 -17.43 -0.21 -0.23 16 6 C -0.19 -1.38 10.09 -38.99 -0.39 -1.78 16 7 C -0.04 -0.35 6.96 -82.06 -0.57 -0.92 16 8 C 0.62 6.36 8.02 -12.64 -0.10 6.26 16 9 O -0.53 -6.71 15.31 5.25 0.08 -6.63 16 10 N -0.63 -5.03 3.61 -179.92 -0.65 -5.68 16 11 C 0.11 0.90 8.64 -2.98 -0.03 0.87 16 12 C 0.11 0.84 5.15 -70.15 -0.36 0.47 16 13 N -0.30 -3.51 3.54 -56.30 -0.20 -3.71 16 14 C -0.05 -0.60 10.72 -17.05 -0.18 -0.79 16 15 C 0.00 0.02 6.61 -82.78 -0.55 -0.53 16 16 C 0.23 4.60 6.82 -5.19 -0.04 4.57 16 17 N -0.73 -18.39 5.59 -61.09 -0.34 -18.73 16 18 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 N -0.25 -4.75 12.41 33.29 0.41 -4.33 16 27 N -0.09 -1.43 13.16 60.35 0.79 -0.63 16 28 C 0.09 0.50 6.48 -2.97 -0.02 0.48 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.12 1.01 5.97 -51.93 -0.31 0.70 16 34 H 0.19 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.16 0.71 5.33 -52.49 -0.28 0.43 16 36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 38 H 0.15 0.83 8.14 -51.92 -0.42 0.41 16 39 H 0.19 1.76 6.72 -52.48 -0.35 1.41 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.39 10.56 7.66 -40.82 -0.31 10.24 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.11 0.52 6.31 -51.93 -0.33 0.19 16 45 H 0.11 0.31 6.46 -51.93 -0.34 -0.02 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -37.09 382.67 -6.29 -43.38 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.69 Total: 4.67 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -2.34 Total: 1.18 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: 0.91 Total: -65.60 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: 0.08 Total: -6.63 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.09 -6.29 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105219717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 257.564 kcal (2) G-P(sol) polarization free energy of solvation -37.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 220.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 214.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds