Wall clock time and date at job start Wed Apr 1 2020 04:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 126.03708 * 2 1 4 4 C 1.30834 * 108.20770 * 180.17238 * 3 2 1 5 5 C 1.39876 * 108.20073 * 359.58566 * 4 3 2 6 6 C 1.34947 * 126.04040 * 179.71450 * 2 1 3 7 7 C 1.50709 * 126.12449 * 359.96194 * 6 2 1 8 8 C 1.50702 * 109.46907 * 265.01844 * 7 6 2 9 9 O 1.21281 * 120.00235 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99912 * 179.97438 * 8 7 6 11 11 C 1.47070 * 136.05406 * 359.64282 * 10 8 7 12 12 C 1.53760 * 87.88552 * 152.95594 * 11 10 8 13 13 N 1.46504 * 114.26257 * 139.78869 * 12 11 10 14 14 C 1.35312 * 125.87203 * 351.18882 * 13 12 11 15 15 C 1.35351 * 106.17220 * 179.90621 * 14 13 12 16 16 C 1.50698 * 126.74775 * 180.12251 * 15 14 13 17 17 N 1.46500 * 109.47284 * 95.24683 * 16 15 14 18 18 C 1.36934 * 120.00470 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99847 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00238 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00195 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46875 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47169 * 119.99638 * 22 20 18 25 25 H 1.48496 * 109.47436 * 239.99942 * 22 20 18 26 26 N 1.33774 * 106.49766 * 0.34868 * 15 14 13 27 27 N 1.28635 * 108.88621 * 359.77517 * 26 15 14 28 28 C 1.47063 * 136.05867 * 179.97438 * 10 8 7 29 29 H 1.08995 * 109.47266 * 270.28769 * 1 2 3 30 30 H 1.08996 * 109.47009 * 30.29267 * 1 2 3 31 31 H 1.09011 * 109.46832 * 150.28859 * 1 2 3 32 32 H 1.08002 * 125.90318 * 179.85840 * 4 3 2 33 33 H 1.08001 * 126.04185 * 180.24007 * 5 4 3 34 34 H 1.09002 * 109.47036 * 25.01940 * 7 6 2 35 35 H 1.09000 * 109.46645 * 145.02156 * 7 6 2 36 36 H 1.09007 * 113.46402 * 267.68289 * 11 10 8 37 37 H 1.08991 * 113.47298 * 38.12650 * 11 10 8 38 38 H 1.08997 * 114.39253 * 272.66673 * 12 11 10 39 39 H 1.07993 * 126.90771 * 0.02562 * 14 13 12 40 40 H 1.09001 * 109.47464 * 215.24502 * 16 15 14 41 41 H 1.08994 * 109.47597 * 335.24412 * 16 15 14 42 42 H 0.97003 * 119.99654 * 359.97438 * 17 16 15 43 43 H 0.97001 * 120.00161 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.46752 * 321.87382 * 28 10 8 45 45 H 1.09006 * 113.46465 * 92.25107 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0037 5 6 3.5437 -0.6665 0.0034 6 6 2.2590 -1.0912 0.0054 7 6 1.7974 -2.5258 0.0134 8 6 1.7618 -3.0341 1.4317 9 8 2.0794 -2.3033 2.3460 10 7 1.3759 -4.3006 1.6841 11 6 0.9259 -5.4498 0.8842 12 6 1.4749 -6.3634 1.9924 13 7 0.6263 -7.5184 2.2960 14 6 -0.6224 -7.7317 1.8202 15 6 -1.0313 -8.9087 2.3489 16 6 -2.3571 -9.5876 2.1202 17 7 -2.2228 -10.5709 1.0425 18 6 -3.3048 -11.3161 0.6567 19 1 -4.2574 -11.1787 1.1466 20 6 -3.1773 -12.2481 -0.3641 21 7 -2.0165 -12.4151 -0.9615 22 14 -4.6536 -13.2642 -0.8909 23 1 -5.8320 -12.8881 -0.0692 24 1 -4.9462 -13.0063 -2.3238 25 1 -4.3563 -14.7062 -0.6982 26 7 -0.0291 -9.3481 3.1183 27 7 0.9383 -8.5019 3.0656 28 6 1.2140 -5.1396 2.8810 29 1 -0.3633 0.0052 1.0276 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3633 -0.8927 -0.5094 32 1 4.4054 1.3711 -0.0069 33 1 4.4211 -1.2963 0.0062 34 1 0.7994 -2.5888 -0.4204 35 1 2.4874 -3.1327 -0.5729 36 1 -0.1572 -5.5043 0.7738 37 1 1.4525 -5.5512 -0.0646 38 1 2.5287 -6.6199 1.8834 39 1 -1.1796 -7.0925 1.1514 40 1 -2.6699 -10.0915 3.0347 41 1 -3.1033 -8.8434 1.8421 42 1 -1.3672 -10.6940 0.6022 43 1 -1.9273 -13.0666 -1.6746 44 1 1.9861 -4.9767 3.6329 45 1 0.2072 -5.1114 3.2979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105224031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:41:00 Heat of formation + Delta-G solvation = 216.737317 kcal Electronic energy + Delta-G solvation = -28551.253560 eV Core-core repulsion = 24417.869101 eV Total energy + Delta-G solvation = -4133.384458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.22166 -41.74370 -40.84519 -38.55660 -35.07309 -33.91681 -33.63527 -32.73618 -31.91134 -30.06996 -29.93750 -27.81402 -27.12382 -26.81729 -25.87201 -24.17391 -22.88331 -21.56803 -21.40080 -20.85830 -20.43901 -19.46887 -18.17357 -17.67277 -17.35066 -17.14065 -16.43605 -16.13904 -15.73204 -15.50202 -15.03422 -14.77479 -14.76083 -14.38275 -14.12285 -13.87196 -13.76064 -13.45504 -13.31701 -13.15761 -13.08902 -13.01605 -12.84458 -12.70454 -12.45693 -12.01852 -11.79533 -11.32387 -11.02125 -10.96067 -10.86705 -10.71076 -10.47165 -10.10695 -9.99490 -9.79359 -9.67106 -9.50085 -8.98228 -8.92116 -8.88881 -6.96773 -5.78666 -3.08466 1.31540 1.62937 1.79737 1.92692 2.11690 2.44912 2.59554 2.79557 3.28443 3.42171 3.48180 3.50311 3.62647 3.85686 4.04118 4.12406 4.18896 4.33465 4.54040 4.59470 4.60752 4.63744 4.70693 4.76466 4.80412 4.92747 4.96731 4.99193 5.10797 5.19203 5.27890 5.35161 5.38093 5.55900 5.69966 5.71478 6.11284 6.29100 6.29733 6.56576 6.56713 6.59751 6.70458 6.90415 7.33012 7.45158 7.67651 8.38493 8.71075 9.50624 10.05545 10.41346 11.44038 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.001804 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.034194 B =15518.048830 C =16458.744059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.366 5.366 3 N -0.293 5.293 4 C 0.047 3.953 5 C -0.253 4.253 6 C 0.096 3.904 7 C -0.073 4.073 8 C 0.553 3.447 9 O -0.515 6.515 10 N -0.646 5.646 11 C 0.094 3.906 12 C 0.113 3.887 13 N -0.293 5.293 14 C -0.047 4.047 15 C 0.001 3.999 16 C 0.231 3.769 17 N -0.726 5.726 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.013 4.013 21 N -0.931 5.931 22 Si 0.909 3.091 23 H -0.279 1.279 24 H -0.292 1.292 25 H -0.291 1.291 26 N -0.249 5.249 27 N -0.088 5.088 28 C 0.101 3.899 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.147 0.853 34 H 0.108 0.892 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.189 0.811 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.098 0.902 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.166 25.573 0.121 27.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.149 5.149 3 N -0.114 5.114 4 C -0.138 4.138 5 C -0.283 4.283 6 C -0.032 4.032 7 C -0.114 4.114 8 C 0.342 3.658 9 O -0.388 6.388 10 N -0.384 5.384 11 C -0.030 4.030 12 C 0.009 3.991 13 N -0.088 5.088 14 C -0.197 4.197 15 C -0.137 4.137 16 C 0.102 3.898 17 N -0.371 5.371 18 C -0.371 4.371 19 H 0.092 0.908 20 C -0.209 4.209 21 N -0.580 5.580 22 Si 0.740 3.260 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 N -0.117 5.117 27 N -0.067 5.067 28 C -0.023 4.023 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.104 0.896 32 H 0.201 0.799 33 H 0.165 0.835 34 H 0.126 0.874 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.168 0.832 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.116 0.884 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.389 26.590 1.484 28.237 hybrid contribution -0.714 -0.884 -1.251 1.690 sum 8.675 25.706 0.233 27.131 Atomic orbital electron populations 1.21880 0.74459 1.04461 1.03639 1.48421 1.06482 1.03278 1.56711 1.77375 1.01941 1.07585 1.24547 1.23817 0.95237 0.94987 0.99786 1.21201 0.96021 0.95211 1.15850 1.20163 0.91532 0.88740 1.02734 1.20178 1.05097 0.91242 0.94877 1.19886 0.76511 0.78389 0.91039 1.90813 1.47286 1.53947 1.46775 1.49218 1.67057 1.10765 1.11346 1.23535 1.02129 0.80840 0.96467 1.23377 0.96657 0.81373 0.97729 1.46996 1.12051 1.17156 1.32583 1.23315 0.87724 1.02144 1.06485 1.22501 0.99012 0.93948 0.98205 1.18970 0.86363 0.91255 0.93184 1.42304 1.11862 1.43482 1.39412 1.19270 0.90135 1.13914 1.13794 0.90809 1.24761 0.96983 0.99956 0.99200 1.69687 1.22835 1.38112 1.27337 0.86089 0.81789 0.80105 0.78013 1.20459 1.21918 1.21832 1.75144 0.98277 1.19636 1.18608 1.78329 1.21906 0.94407 1.12025 1.23394 1.04049 0.84237 0.90604 0.90601 0.88943 0.89620 0.79854 0.83525 0.87390 0.85711 0.87685 0.87736 0.83228 0.79408 0.94222 0.94423 0.78091 0.93539 0.88370 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.54 11.27 59.85 0.67 1.21 16 2 N -0.37 -3.37 4.01 -63.88 -0.26 -3.63 16 3 N -0.29 -3.21 12.58 30.63 0.39 -2.82 16 4 C 0.05 0.43 12.03 -17.36 -0.21 0.22 16 5 C -0.25 -2.20 10.72 -40.01 -0.43 -2.62 16 6 C 0.10 0.81 5.42 -82.26 -0.45 0.36 16 7 C -0.07 -0.38 5.81 -29.03 -0.17 -0.54 16 8 C 0.55 4.47 8.07 -10.98 -0.09 4.38 16 9 O -0.51 -6.57 16.81 5.56 0.09 -6.48 16 10 N -0.65 -4.06 3.69 -185.07 -0.68 -4.75 16 11 C 0.09 0.41 7.77 -8.36 -0.06 0.34 16 12 C 0.11 0.78 5.34 -67.68 -0.36 0.42 16 13 N -0.29 -3.43 3.56 -54.45 -0.19 -3.63 16 14 C -0.05 -0.59 10.72 -17.05 -0.18 -0.78 16 15 C 0.00 0.01 6.62 -82.78 -0.55 -0.53 16 16 C 0.23 4.55 6.82 -5.19 -0.04 4.52 16 17 N -0.73 -18.13 5.59 -61.09 -0.34 -18.47 16 18 C -0.24 -6.55 9.99 -15.06 -0.15 -6.70 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.89 13.06 55.49 0.72 -27.16 16 22 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 N -0.25 -4.72 12.41 33.29 0.41 -4.31 16 27 N -0.09 -1.41 13.17 60.35 0.79 -0.62 16 28 C 0.10 0.69 8.42 -8.51 -0.07 0.62 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.24 6.98 -51.92 -0.36 -0.12 16 32 H 0.18 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.11 0.30 6.95 -51.93 -0.36 -0.06 16 35 H 0.12 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.11 0.37 6.40 -51.92 -0.33 0.04 16 37 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.19 1.65 6.78 -52.49 -0.36 1.29 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.39 10.40 7.66 -40.82 -0.31 10.08 16 43 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -39.45 390.54 -6.30 -45.75 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.92 Total: 2.87 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.18 Total: 0.43 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: 0.84 Total: -65.38 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: 0.09 Total: -6.48 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.45 -6.30 -45.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105224031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 262.488 kcal (2) G-P(sol) polarization free energy of solvation -39.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 223.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds