Wall clock time and date at job start Wed Apr 1 2020 04:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40084 * 126.03708 * 2 1 4 4 C 1.30834 * 108.20770 * 180.17238 * 3 2 1 5 5 C 1.39876 * 108.20073 * 359.58566 * 4 3 2 6 6 C 1.34947 * 126.04040 * 179.71450 * 2 1 3 7 7 C 1.50709 * 126.12449 * 359.96194 * 6 2 1 8 8 C 1.50702 * 109.46907 * 265.01844 * 7 6 2 9 9 O 1.21281 * 120.00235 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99912 * 179.97438 * 8 7 6 11 11 C 1.47070 * 136.05406 * 359.64282 * 10 8 7 12 12 C 1.53760 * 87.88552 * 152.95594 * 11 10 8 13 13 N 1.46504 * 114.26257 * 139.78869 * 12 11 10 14 14 C 1.35312 * 125.87203 * 351.18882 * 13 12 11 15 15 C 1.35351 * 106.17220 * 179.90621 * 14 13 12 16 16 C 1.50698 * 126.74775 * 180.12251 * 15 14 13 17 17 N 1.46500 * 109.47284 * 95.24683 * 16 15 14 18 18 C 1.36934 * 120.00470 * 179.97438 * 17 16 15 19 19 H 1.07994 * 119.99847 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00238 * 180.02562 * 18 17 16 21 21 N 1.31618 * 119.99805 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00195 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46875 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47169 * 119.99638 * 22 20 18 25 25 H 1.48496 * 109.47436 * 239.99942 * 22 20 18 26 26 N 1.33774 * 106.49766 * 0.34868 * 15 14 13 27 27 N 1.28635 * 108.88621 * 359.77517 * 26 15 14 28 28 C 1.47063 * 136.05867 * 179.97438 * 10 8 7 29 29 H 1.08995 * 109.47266 * 270.28769 * 1 2 3 30 30 H 1.08996 * 109.47009 * 30.29267 * 1 2 3 31 31 H 1.09011 * 109.46832 * 150.28859 * 1 2 3 32 32 H 1.08002 * 125.90318 * 179.85840 * 4 3 2 33 33 H 1.08001 * 126.04185 * 180.24007 * 5 4 3 34 34 H 1.09002 * 109.47036 * 25.01940 * 7 6 2 35 35 H 1.09000 * 109.46645 * 145.02156 * 7 6 2 36 36 H 1.09007 * 113.46402 * 267.68289 * 11 10 8 37 37 H 1.08991 * 113.47298 * 38.12650 * 11 10 8 38 38 H 1.08997 * 114.39253 * 272.66673 * 12 11 10 39 39 H 1.07993 * 126.90771 * 0.02562 * 14 13 12 40 40 H 1.09001 * 109.47464 * 215.24502 * 16 15 14 41 41 H 1.08994 * 109.47597 * 335.24412 * 16 15 14 42 42 H 0.97003 * 119.99654 * 359.97438 * 17 16 15 43 43 H 0.97001 * 120.00161 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.46752 * 321.87382 * 28 10 8 45 45 H 1.09006 * 113.46465 * 92.25107 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0037 5 6 3.5437 -0.6665 0.0034 6 6 2.2590 -1.0912 0.0054 7 6 1.7974 -2.5258 0.0134 8 6 1.7618 -3.0341 1.4317 9 8 2.0794 -2.3033 2.3460 10 7 1.3759 -4.3006 1.6841 11 6 0.9259 -5.4498 0.8842 12 6 1.4749 -6.3634 1.9924 13 7 0.6263 -7.5184 2.2960 14 6 -0.6224 -7.7317 1.8202 15 6 -1.0313 -8.9087 2.3489 16 6 -2.3571 -9.5876 2.1202 17 7 -2.2228 -10.5709 1.0425 18 6 -3.3048 -11.3161 0.6567 19 1 -4.2574 -11.1787 1.1466 20 6 -3.1773 -12.2481 -0.3641 21 7 -2.0165 -12.4151 -0.9615 22 14 -4.6536 -13.2642 -0.8909 23 1 -5.8320 -12.8881 -0.0692 24 1 -4.9462 -13.0063 -2.3238 25 1 -4.3563 -14.7062 -0.6982 26 7 -0.0291 -9.3481 3.1183 27 7 0.9383 -8.5019 3.0656 28 6 1.2140 -5.1396 2.8810 29 1 -0.3633 0.0052 1.0276 30 1 -0.3633 0.8873 -0.5184 31 1 -0.3633 -0.8927 -0.5094 32 1 4.4054 1.3711 -0.0069 33 1 4.4211 -1.2963 0.0062 34 1 0.7994 -2.5888 -0.4204 35 1 2.4874 -3.1327 -0.5729 36 1 -0.1572 -5.5043 0.7738 37 1 1.4525 -5.5512 -0.0646 38 1 2.5287 -6.6199 1.8834 39 1 -1.1796 -7.0925 1.1514 40 1 -2.6699 -10.0915 3.0347 41 1 -3.1033 -8.8434 1.8421 42 1 -1.3672 -10.6940 0.6022 43 1 -1.9273 -13.0666 -1.6746 44 1 1.9861 -4.9767 3.6329 45 1 0.2072 -5.1114 3.2979 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105224031.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:59 Heat of formation + Delta-G solvation = 186.191463 kcal Electronic energy + Delta-G solvation = -28552.578127 eV Core-core repulsion = 24417.869101 eV Total energy + Delta-G solvation = -4134.709026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.29810 -42.32216 -41.44121 -39.22877 -36.77003 -34.81849 -34.41859 -33.58290 -33.24415 -31.59650 -30.68518 -28.37324 -27.77120 -27.60044 -27.05243 -25.05162 -24.69309 -22.42855 -22.15571 -21.93970 -21.03589 -19.98912 -19.36703 -18.75584 -18.21344 -17.88759 -17.31332 -16.82913 -16.60814 -16.37785 -16.10035 -15.94304 -15.54976 -15.30851 -15.15733 -14.98334 -14.68513 -14.35167 -14.24927 -14.00839 -13.82493 -13.74608 -13.54064 -13.33358 -13.25311 -12.99942 -12.89757 -12.78261 -12.53056 -12.32639 -12.00487 -11.87750 -11.76484 -11.63990 -11.26426 -11.00405 -10.92705 -10.28312 -10.19647 -10.02888 -9.48620 -8.97148 -7.90006 -5.19445 0.59872 0.72776 1.11002 1.38023 1.49197 1.53442 1.55807 1.61446 1.64428 1.80734 1.99368 2.62462 2.73692 3.11460 3.37665 3.42066 3.49181 3.60291 3.69724 3.74142 3.97433 4.02191 4.16176 4.22200 4.27720 4.28350 4.34870 4.38738 4.42203 4.48096 4.55909 4.57568 4.64199 4.70290 4.77162 4.78867 4.91731 5.16418 5.17003 5.22858 5.55959 5.67634 5.71251 6.06659 6.30395 6.39410 6.71710 6.89371 7.37675 7.54657 8.09626 8.34739 9.33913 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.017173 B = 0.001804 C = 0.001701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.034194 B =15518.048830 C =16458.744059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.376 5.376 3 N -0.337 5.337 4 C 0.037 3.963 5 C -0.274 4.274 6 C 0.091 3.909 7 C -0.065 4.065 8 C 0.555 3.445 9 O -0.571 6.571 10 N -0.640 5.640 11 C 0.105 3.895 12 C 0.102 3.898 13 N -0.275 5.275 14 C -0.013 4.013 15 C -0.037 4.037 16 C 0.234 3.766 17 N -0.738 5.738 18 C -0.240 4.240 19 H 0.084 0.916 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.263 1.263 24 H -0.291 1.291 25 H -0.300 1.300 26 N -0.298 5.298 27 N -0.110 5.110 28 C 0.098 3.902 29 H 0.070 0.930 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.205 0.795 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.235 0.765 40 H 0.025 0.975 41 H 0.067 0.933 42 H 0.372 0.628 43 H 0.250 0.750 44 H 0.089 0.911 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.142 26.437 -1.432 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.159 5.159 3 N -0.159 5.159 4 C -0.148 4.148 5 C -0.304 4.304 6 C -0.037 4.037 7 C -0.106 4.106 8 C 0.345 3.655 9 O -0.449 6.449 10 N -0.376 5.376 11 C -0.018 4.018 12 C -0.001 4.001 13 N -0.069 5.069 14 C -0.164 4.164 15 C -0.176 4.176 16 C 0.106 3.894 17 N -0.381 5.381 18 C -0.371 4.371 19 H 0.102 0.898 20 C -0.269 4.269 21 N -0.622 5.622 22 Si 0.804 3.196 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.227 1.227 26 N -0.165 5.165 27 N -0.088 5.088 28 C -0.026 4.026 29 H 0.089 0.911 30 H 0.115 0.885 31 H 0.136 0.864 32 H 0.221 0.779 33 H 0.178 0.822 34 H 0.158 0.842 35 H 0.174 0.826 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.180 0.820 39 H 0.251 0.749 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.352 27.474 -0.039 28.716 hybrid contribution -0.345 -1.043 -0.668 1.286 sum 8.007 26.431 -0.707 27.626 Atomic orbital electron populations 1.22155 0.72913 1.06331 1.03851 1.48733 1.07567 1.03114 1.56440 1.77292 1.02958 1.09312 1.26340 1.24288 0.95498 0.95898 0.99092 1.21551 0.97052 0.95299 1.16466 1.20704 0.91512 0.90057 1.01469 1.20330 1.07708 0.89342 0.93205 1.20357 0.75343 0.78164 0.91591 1.90802 1.49927 1.55555 1.48620 1.49135 1.66250 1.10645 1.11536 1.23749 1.03576 0.77981 0.96464 1.23836 0.96907 0.79814 0.99497 1.47291 1.12116 1.16944 1.30521 1.23793 0.87500 1.00503 1.04648 1.22302 0.98508 0.96141 1.00601 1.18988 0.88743 0.90754 0.90899 1.42505 1.10637 1.44463 1.40487 1.19717 0.91064 1.13389 1.12977 0.89811 1.25582 0.99590 1.01723 0.99984 1.69844 1.24970 1.39157 1.28219 0.85045 0.79187 0.77753 0.77579 1.18676 1.21857 1.22729 1.75070 0.99450 1.21614 1.20381 1.78222 1.21564 0.95471 1.13554 1.23382 1.03916 0.84377 0.90955 0.91143 0.88539 0.86412 0.77881 0.82182 0.84199 0.82583 0.85781 0.84304 0.82027 0.74852 0.95670 0.91564 0.79698 0.94131 0.89259 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 11.27 127.77 1.44 2.26 16 2 N -0.38 -6.50 4.01 -356.02 -1.43 -7.93 16 3 N -0.34 -7.38 12.58 -57.02 -0.72 -8.10 16 4 C 0.04 0.66 12.03 85.24 1.03 1.68 16 5 C -0.27 -4.47 10.72 21.99 0.24 -4.24 16 6 C 0.09 1.36 5.42 41.41 0.22 1.58 16 7 C -0.07 -0.42 5.81 29.11 0.17 -0.25 16 8 C 0.55 7.42 8.07 87.66 0.71 8.13 16 9 O -0.57 -14.09 16.81 -3.03 -0.05 -14.14 16 10 N -0.64 -5.72 3.69 -857.81 -3.16 -8.88 16 11 C 0.11 0.35 7.77 83.27 0.65 1.00 16 12 C 0.10 1.07 5.34 45.54 0.24 1.31 16 13 N -0.27 -5.72 3.56 -326.18 -1.16 -6.88 16 14 C -0.01 -0.29 10.72 83.49 0.90 0.60 16 15 C -0.04 -1.25 6.62 41.60 0.28 -0.97 16 16 C 0.23 8.98 6.82 85.63 0.58 9.56 16 17 N -0.74 -36.60 5.59 -347.19 -1.94 -38.54 16 18 C -0.24 -12.92 9.99 84.03 0.84 -12.08 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 20 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 21 N -0.97 -58.65 13.06 21.65 0.28 -58.37 16 22 Si 0.98 44.89 29.55 68.60 2.03 46.91 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 26 N -0.30 -11.34 12.41 -48.60 -0.60 -11.94 16 27 N -0.11 -3.43 13.17 37.02 0.49 -2.94 16 28 C 0.10 1.11 8.42 83.18 0.70 1.81 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 0.26 6.98 -2.38 -0.02 0.25 16 32 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 34 H 0.14 0.01 6.95 -2.39 -0.02 0.00 16 35 H 0.16 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.12 0.05 6.40 -2.38 -0.02 0.04 16 37 H 0.14 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.16 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.24 2.74 6.78 -2.91 -0.02 2.72 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.37 20.19 7.66 -92.71 -0.71 19.48 16 43 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 45 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -90.43 390.54 2.51 -87.92 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.33 Total: 16.32 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 8.45 Total: 6.56 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -8.24 Total: -143.58 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.05 Total: -14.14 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -90.43 2.51 -87.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105224031.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 274.113 kcal (2) G-P(sol) polarization free energy of solvation -90.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 186.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds