Wall clock time and date at job start Wed Apr 1 2020 03:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.46844 * 2 1 4 4 C 1.35842 * 126.13385 * 89.98099 * 3 2 1 5 5 N 1.30172 * 109.00253 * 180.02562 * 4 3 2 6 6 C 1.35757 * 108.86614 * 359.97438 * 5 4 3 7 7 C 1.47329 * 126.23642 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00132 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99907 * 0.02562 * 7 6 5 10 10 C 1.47587 * 134.49194 * 180.02562 * 9 7 6 11 11 C 1.53947 * 86.11492 * 155.35831 * 10 9 7 12 12 N 1.46494 * 113.73833 * 137.94973 * 11 10 9 13 13 C 1.35317 * 125.87155 * 275.32706 * 12 11 10 14 14 C 1.35352 * 106.17693 * 180.11507 * 13 12 11 15 15 C 1.50700 * 126.75361 * 179.84844 * 14 13 12 16 16 N 1.46498 * 109.46769 * 94.71485 * 15 14 13 17 17 C 1.36943 * 119.99752 * 179.72432 * 16 15 14 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 15 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 15 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47294 * 90.00155 * 21 19 17 23 23 H 1.48499 * 109.47218 * 210.00015 * 21 19 17 24 24 H 1.48496 * 109.47166 * 329.99846 * 21 19 17 25 25 N 1.33772 * 106.49634 * 359.59642 * 14 13 12 26 26 N 1.28636 * 108.88627 * 0.25926 * 25 14 13 27 27 C 1.47585 * 134.49454 * 0.02562 * 9 7 6 28 28 C 1.35384 * 126.13335 * 270.32550 * 3 2 1 29 29 H 1.08991 * 109.47389 * 60.00232 * 1 2 3 30 30 H 1.09008 * 109.46893 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46744 * 299.99514 * 1 2 3 32 32 H 1.09005 * 109.47214 * 240.00090 * 2 1 3 33 33 H 1.08997 * 109.47363 * 120.00230 * 2 1 3 34 34 H 1.08001 * 125.50037 * 359.97438 * 4 3 2 35 35 H 1.09000 * 113.76791 * 41.06228 * 10 9 7 36 36 H 1.08997 * 113.86709 * 269.67394 * 10 9 7 37 37 H 1.08997 * 113.74241 * 269.15464 * 11 10 9 38 38 H 1.08002 * 126.91295 * 359.96910 * 13 12 11 39 39 H 1.09004 * 109.47210 * 334.71843 * 15 14 13 40 40 H 1.08994 * 109.47121 * 214.71813 * 15 14 13 41 41 H 0.97001 * 120.00384 * 0.02562 * 16 15 14 42 42 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 43 43 H 1.08992 * 113.76674 * 90.33680 * 27 9 7 44 44 H 1.09002 * 113.76315 * 318.94269 * 27 9 7 45 45 H 1.08002 * 126.56380 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2849 2.1366 1.0971 5 7 2.6991 3.3096 0.7137 6 6 2.7134 3.3481 -0.6433 7 6 3.1184 4.4927 -1.4778 8 8 3.0867 4.4027 -2.6903 9 7 3.5240 5.6396 -0.8976 10 6 3.9861 6.9471 -1.4026 11 6 3.5092 7.5184 -0.0549 12 7 4.4306 8.4953 0.5307 13 6 5.5112 8.2082 1.2929 14 6 6.0691 9.3974 1.6193 15 6 7.2986 9.6154 2.4630 16 7 8.4714 9.7397 1.5940 17 6 9.7094 9.9498 2.1405 18 1 9.8216 10.0194 3.2124 19 6 10.8198 10.0733 1.3168 20 7 10.6828 9.9889 0.0104 21 14 12.5085 10.3591 2.0623 22 1 13.1603 9.0515 2.3277 23 1 13.3411 11.1440 1.1158 24 1 12.3668 11.1092 3.3361 25 7 5.3177 10.3410 1.0409 26 7 4.3550 9.7739 0.4034 27 6 3.6845 6.0924 0.4979 28 6 2.2785 2.1360 -1.0934 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.1708 1.8160 2.1221 35 1 3.4199 7.3122 -2.2594 36 1 5.0646 7.0075 -1.5484 37 1 2.4751 7.8628 -0.0655 38 1 5.8573 7.2276 1.5844 39 1 7.4328 8.7680 3.1354 40 1 7.1811 10.5278 3.0475 41 1 8.3705 9.6775 0.6312 42 1 11.4588 10.0749 -0.5651 43 1 4.6745 5.8999 0.9110 44 1 2.8775 5.7749 1.1583 45 1 2.1663 1.8350 -2.1245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105361178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:08 Heat of formation + Delta-G solvation = 164.449101 kcal Electronic energy + Delta-G solvation = -28669.758963 eV Core-core repulsion = 24534.107118 eV Total energy + Delta-G solvation = -4135.651846 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.31321 -43.18265 -41.26143 -39.01542 -36.78000 -35.94095 -34.75870 -33.56419 -31.61921 -31.41992 -31.14011 -29.80171 -27.85259 -27.39994 -25.62152 -24.73844 -24.56977 -23.51531 -22.29433 -21.85248 -21.63169 -20.19043 -19.40352 -18.81956 -18.40404 -17.66818 -17.41727 -16.83137 -16.64268 -16.43655 -16.09552 -15.80358 -15.38943 -15.30360 -15.13978 -15.02096 -14.75739 -14.64659 -14.40878 -14.25156 -13.91126 -13.81655 -13.50682 -13.38999 -12.97484 -12.95853 -12.76246 -12.62727 -12.48353 -12.20985 -12.07225 -11.86386 -11.82980 -11.49588 -11.09487 -11.03428 -10.92907 -10.76315 -10.21483 -10.08942 -9.61478 -8.99014 -7.90817 -5.21029 0.47487 0.57002 1.05452 1.39597 1.46988 1.53123 1.53892 1.62744 1.65021 1.92585 2.45437 2.61654 2.76319 3.03771 3.36889 3.42827 3.54254 3.67210 3.73543 3.89242 3.94696 3.98828 4.10947 4.16331 4.23655 4.26106 4.33306 4.34625 4.42746 4.45955 4.56158 4.64313 4.67692 4.73816 4.85430 4.89740 5.12814 5.15930 5.20962 5.24317 5.41269 5.53865 5.63719 6.10784 6.28734 6.37104 6.69798 7.03319 7.35554 7.51925 8.07584 8.33045 9.33127 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.001974 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.052348 B =14181.178432 C =14905.860465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.093 3.907 3 N -0.449 5.449 4 C 0.199 3.801 5 N -0.488 5.488 6 C -0.096 4.096 7 C 0.628 3.372 8 O -0.579 6.579 9 N -0.632 5.632 10 C 0.101 3.899 11 C 0.111 3.889 12 N -0.276 5.276 13 C -0.017 4.017 14 C -0.034 4.034 15 C 0.235 3.765 16 N -0.740 5.740 17 C -0.241 4.241 18 H 0.086 0.914 19 C -0.080 4.080 20 N -0.974 5.974 21 Si 0.979 3.021 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.266 1.266 25 N -0.294 5.294 26 N -0.106 5.106 27 C 0.130 3.870 28 C 0.044 3.956 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.166 0.834 38 H 0.224 0.776 39 H 0.065 0.935 40 H 0.031 0.969 41 H 0.370 0.630 42 H 0.249 0.751 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.316 -27.561 3.768 38.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.129 5.129 4 C -0.086 4.086 5 N -0.207 5.207 6 C -0.224 4.224 7 C 0.420 3.580 8 O -0.459 6.459 9 N -0.366 5.366 10 C -0.023 4.023 11 C 0.009 3.991 12 N -0.071 5.071 13 C -0.168 4.168 14 C -0.172 4.172 15 C 0.107 3.893 16 N -0.382 5.382 17 C -0.373 4.373 18 H 0.104 0.896 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.808 3.192 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.191 1.191 25 N -0.161 5.161 26 N -0.084 5.084 27 C 0.007 3.993 28 C -0.097 4.097 29 H 0.068 0.932 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.144 0.856 34 H 0.265 0.735 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.184 0.816 38 H 0.241 0.759 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.201 0.799 42 H 0.058 0.942 43 H 0.124 0.876 44 H 0.145 0.855 45 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -26.939 -26.076 3.094 37.620 hybrid contribution 1.402 -0.958 -0.713 1.841 sum -25.537 -27.034 2.382 37.265 Atomic orbital electron populations 1.22161 0.93420 1.04412 1.02579 1.22338 0.96016 0.77154 1.07188 1.45820 1.47117 1.14235 1.05747 1.25969 1.01033 0.86410 0.95172 1.70544 1.19449 1.21291 1.09439 1.20160 1.15492 0.95341 0.91386 1.16842 0.75497 0.79975 0.85670 1.90795 1.57668 1.82456 1.14984 1.49294 1.64878 1.12298 1.10177 1.23615 1.01380 0.79792 0.97474 1.24121 0.94695 0.86132 0.94194 1.47363 1.19937 1.06256 1.33506 1.23708 0.90815 1.02442 0.99863 1.22288 1.00338 0.90001 1.04556 1.18998 0.80280 0.99535 0.90484 1.42530 1.02803 1.87549 1.05345 1.19717 0.85246 1.39669 0.92648 0.89602 1.25655 1.02040 1.03703 0.95776 1.69866 1.29943 1.59132 1.03505 0.85048 0.79352 0.77517 0.77271 1.21038 1.22709 1.19108 1.75048 1.02671 1.28531 1.09838 1.78195 1.19560 0.90199 1.20451 1.23609 1.05704 0.85260 0.84681 1.22737 1.01275 0.91236 0.94489 0.93180 0.88475 0.91874 0.87546 0.85621 0.73478 0.87665 0.89474 0.81648 0.75921 0.91691 0.95126 0.79878 0.94186 0.87569 0.85453 0.78778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 0.05 10.24 71.98 0.74 0.79 16 2 C 0.09 -0.05 6.84 86.38 0.59 0.54 16 3 N -0.45 -3.39 2.72 -528.38 -1.44 -4.83 16 4 C 0.20 1.75 12.55 180.10 2.26 4.02 16 5 N -0.49 -8.05 9.67 -188.82 -1.83 -9.88 16 6 C -0.10 -1.93 6.93 40.51 0.28 -1.65 16 7 C 0.63 16.04 8.04 86.64 0.70 16.74 16 8 O -0.58 -18.54 17.61 -4.11 -0.07 -18.61 16 9 N -0.63 -13.70 3.61 -841.12 -3.03 -16.73 16 10 C 0.10 2.17 8.64 86.48 0.75 2.92 16 11 C 0.11 2.06 5.15 46.75 0.24 2.30 16 12 N -0.28 -7.46 3.54 -332.03 -1.18 -8.64 16 13 C -0.02 -0.49 10.72 83.49 0.89 0.41 16 14 C -0.03 -1.27 6.61 41.60 0.28 -1.00 16 15 C 0.23 9.84 6.82 85.63 0.58 10.42 16 16 N -0.74 -39.35 5.59 -347.18 -1.94 -41.29 16 17 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 18 H 0.09 4.55 7.83 -2.91 -0.02 4.52 16 19 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 20 N -0.97 -61.94 13.06 21.65 0.28 -61.66 16 21 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 N -0.29 -12.21 12.41 -48.60 -0.60 -12.81 16 26 N -0.11 -3.74 13.17 37.02 0.49 -3.25 16 27 C 0.13 2.11 7.25 86.48 0.63 2.74 16 28 C 0.04 0.63 11.26 83.72 0.94 1.58 16 29 H 0.05 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.10 -0.33 8.14 -2.38 -0.02 -0.35 16 31 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.11 -0.22 8.14 -2.38 -0.02 -0.24 16 33 H 0.13 -0.65 8.14 -2.39 -0.02 -0.67 16 34 H 0.25 -0.02 8.06 -2.91 -0.02 -0.05 16 35 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.17 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.22 4.59 6.72 -2.91 -0.02 4.57 16 39 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 40 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.37 21.64 7.66 -92.71 -0.71 20.93 16 42 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.11 1.61 6.31 -2.39 -0.02 1.60 16 44 H 0.13 1.73 7.46 -2.39 -0.02 1.71 16 45 H 0.20 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -87.49 390.62 3.21 -84.28 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.32 Total: 21.73 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 10.18 Total: 22.69 kcal Atomic # 7 Polarization: -149.84 SS G_CDS: -9.25 Total: -159.09 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.07 Total: -18.61 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -87.49 3.21 -84.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105361178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.730 kcal (2) G-P(sol) polarization free energy of solvation -87.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds