Wall clock time and date at job start Wed Apr 1 2020 03:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46630 * 2 1 4 4 C 1.52990 * 109.47358 * 239.99894 * 2 1 3 5 5 C 1.52997 * 109.47420 * 64.99742 * 4 2 1 6 6 F 1.39898 * 109.46963 * 65.00082 * 5 4 2 7 7 F 1.39901 * 109.47835 * 185.00312 * 5 4 2 8 8 C 1.50703 * 109.47063 * 119.99447 * 2 1 3 9 9 O 1.21283 * 119.99488 * 120.00024 * 8 2 1 10 10 N 1.34777 * 120.00290 * 300.00464 * 8 2 1 11 11 C 1.46498 * 119.99828 * 180.27728 * 10 8 2 12 12 H 1.08999 * 110.85849 * 322.38622 * 11 10 8 13 13 C 1.54629 * 110.97217 * 86.17660 * 11 10 8 14 14 C 1.51277 * 104.19793 * 142.91646 * 13 11 10 15 15 O 1.21275 * 124.94482 * 163.71282 * 14 13 11 16 16 N 1.34426 * 110.11291 * 343.74648 * 14 13 11 17 17 C 1.46507 * 124.34873 * 179.57416 * 16 14 13 18 18 C 1.53950 * 113.74158 * 38.71386 * 17 16 14 19 19 N 1.47816 * 86.03479 * 222.08661 * 18 17 16 20 20 C 1.36935 * 134.45396 * 204.64485 * 19 18 17 21 21 H 1.08000 * 119.99769 * 179.87013 * 20 19 18 22 22 C 1.38815 * 120.00104 * 359.86333 * 20 19 18 23 23 N 1.31624 * 119.99919 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99969 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47108 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46779 * 120.00530 * 24 22 20 27 27 H 1.48503 * 109.47172 * 240.00340 * 24 22 20 28 28 C 1.47578 * 91.04861 * 24.55149 * 19 18 17 29 29 C 1.46759 * 111.30163 * 359.59513 * 16 14 13 30 30 H 1.09001 * 109.46852 * 300.00183 * 1 2 3 31 31 H 1.08993 * 109.46731 * 60.00419 * 1 2 3 32 32 H 1.09003 * 109.46582 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47937 * 185.00219 * 4 2 1 34 34 H 1.09002 * 109.47237 * 304.99957 * 4 2 1 35 35 H 1.09010 * 109.47256 * 305.00337 * 5 4 2 36 36 H 0.97001 * 119.99727 * 359.97438 * 10 8 2 37 37 H 1.09002 * 110.48693 * 261.59262 * 13 11 10 38 38 H 1.08996 * 110.48753 * 24.10266 * 13 11 10 39 39 H 1.08992 * 112.94174 * 170.30947 * 17 16 14 40 40 H 1.09002 * 113.76966 * 336.34915 * 18 17 16 41 41 H 1.08995 * 113.77085 * 107.74730 * 18 17 16 42 42 H 0.96997 * 120.00190 * 179.97438 * 23 22 20 43 43 H 1.09002 * 113.76664 * 221.15079 * 28 19 18 44 44 H 1.08996 * 113.77137 * 89.76187 * 28 19 18 45 45 H 1.09004 * 110.24294 * 258.01920 * 29 16 14 46 46 H 1.08991 * 110.24805 * 136.01676 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.6354 0.0688 -2.4952 6 9 2.2842 1.3083 -2.4927 7 9 2.0012 -0.6467 -3.6404 8 6 2.0324 -0.7103 1.2306 9 8 2.7297 -1.6964 1.1193 10 7 1.7068 -0.2498 2.4546 11 6 2.2001 -0.9368 3.6508 12 1 2.2068 -2.0168 3.5031 13 6 3.6047 -0.4234 4.0442 14 6 3.5866 -0.4155 5.5568 15 8 4.5703 -0.3484 6.2629 16 7 2.3215 -0.4944 6.0044 17 6 1.9456 -0.5191 7.4202 18 6 2.7926 0.4156 8.3028 19 7 2.8088 -0.6918 9.2818 20 6 2.9701 -0.7694 10.6394 21 1 2.9379 -1.7295 11.1330 22 6 3.1753 0.3859 11.3811 23 7 3.2143 1.5559 10.7795 24 14 3.3947 0.2801 13.2332 25 1 3.3094 -1.1393 13.6614 26 1 4.7225 0.8305 13.6065 27 1 2.3272 1.0649 13.9037 28 6 2.5789 -1.6793 8.2094 29 6 1.3653 -0.5531 4.8926 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 3.1264 -0.7995 -1.2056 34 1 1.6055 -1.7198 -1.2951 35 1 0.5563 0.2236 -2.4928 36 1 1.1493 0.5390 2.5436 37 1 4.3754 -1.1003 3.6755 38 1 3.7652 0.5828 3.6573 39 1 0.8718 -0.4166 7.5765 40 1 3.7723 0.6464 7.8845 41 1 2.2565 1.3000 8.6470 42 1 3.3573 2.3633 11.2978 43 1 1.8725 -2.4643 8.4791 44 1 3.4957 -2.0651 7.7636 45 1 0.8970 0.4203 4.7461 46 1 0.6073 -1.3118 5.0867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108555511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:23 Heat of formation + Delta-G solvation = -113.684608 kcal Electronic energy + Delta-G solvation = -30211.395918 eV Core-core repulsion = 25580.701352 eV Total energy + Delta-G solvation = -4630.694566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -49.39774 -47.40318 -40.91191 -39.92733 -37.33941 -36.54661 -35.57929 -34.23325 -32.20343 -30.56832 -29.26377 -27.63071 -27.13558 -25.71257 -24.74691 -23.52414 -22.96343 -21.55935 -20.70151 -20.26729 -18.39080 -18.21900 -18.03630 -17.39761 -16.93115 -16.70206 -16.44501 -16.22559 -15.73002 -15.48612 -14.82559 -14.70286 -14.38068 -14.27012 -14.05920 -13.91838 -13.76489 -13.65359 -13.54780 -13.41839 -13.15384 -13.12352 -12.79318 -12.44823 -12.11801 -11.90132 -11.88015 -11.75496 -11.61810 -11.42025 -11.32531 -11.18926 -10.86285 -10.71459 -10.30058 -10.16916 -9.96795 -9.74900 -9.50730 -9.20976 -8.68230 -8.22026 -6.82699 -5.73507 -3.05345 2.16844 2.49576 2.89409 3.23029 3.38162 3.41413 3.46930 3.49100 3.69318 3.80334 4.02877 4.14012 4.29061 4.36810 4.44349 4.50441 4.52603 4.70474 4.76642 4.84658 5.00900 5.08830 5.17777 5.21448 5.30813 5.32314 5.46462 5.48807 5.52330 5.60668 5.63181 5.66752 5.82207 6.04035 6.27375 6.50315 6.56181 6.85071 7.00616 7.27622 7.45695 7.57213 7.60947 7.75415 8.00090 8.51985 9.07498 9.73597 10.62416 11.43895 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.037172 B = 0.001768 C = 0.001767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.073118 B =15835.307930 C =15839.622308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 H 0.110 0.890 4 C -0.154 4.154 5 C 0.260 3.740 6 F -0.205 7.205 7 F -0.205 7.205 8 C 0.524 3.476 9 O -0.530 6.530 10 N -0.718 5.718 11 C 0.135 3.865 12 H 0.111 0.889 13 C -0.167 4.167 14 C 0.515 3.485 15 O -0.506 6.506 16 N -0.606 5.606 17 C 0.098 3.902 18 C 0.153 3.847 19 N -0.605 5.605 20 C -0.219 4.219 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.913 3.087 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.111 3.889 29 C 0.100 3.900 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.404 0.596 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.253 0.747 43 H 0.043 0.957 44 H 0.040 0.960 45 H 0.073 0.927 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.006 -1.456 -28.176 30.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.134 4.134 3 H 0.128 0.872 4 C -0.193 4.193 5 C 0.206 3.794 6 F -0.187 7.187 7 F -0.186 7.186 8 C 0.309 3.691 9 O -0.406 6.406 10 N -0.370 5.370 11 C 0.029 3.971 12 H 0.129 0.871 13 C -0.209 4.209 14 C 0.301 3.699 15 O -0.380 6.380 16 N -0.342 5.342 17 C -0.004 4.004 18 C 0.027 3.973 19 N -0.331 5.331 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.744 3.256 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 C -0.016 4.016 29 C -0.025 4.025 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.239 0.761 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.917 -2.012 -27.463 29.268 hybrid contribution 0.007 0.497 0.923 1.048 sum -9.910 -1.516 -26.540 28.371 Atomic orbital electron populations 1.21933 0.92161 1.03530 1.03423 1.21245 0.98058 1.01573 0.92485 0.87215 1.22479 1.05302 1.00411 0.91064 1.22020 0.96881 0.76795 0.83703 1.92998 1.84435 1.44503 1.96756 1.93001 1.93786 1.78594 1.53262 1.20374 0.79920 0.84451 0.84325 1.90758 1.37180 1.26015 1.86642 1.45921 1.53829 1.32215 1.05059 1.21820 0.92868 0.98617 0.83764 0.87120 1.22827 0.98756 1.04535 0.94759 1.20591 0.83244 0.76295 0.89762 1.90796 1.36470 1.48453 1.62296 1.48506 1.06312 1.73032 1.06311 1.24090 1.00127 1.01061 0.75133 1.22789 0.97109 0.92543 0.84854 1.45718 1.84305 1.02235 1.00882 1.19041 1.42494 0.93461 0.79687 0.90112 1.24808 1.02254 0.95287 0.98201 1.69838 1.55724 0.97050 1.34058 0.86021 0.77394 0.77315 0.84878 1.20441 1.21731 1.21723 1.22924 0.96958 0.93017 0.88684 1.22181 0.92630 1.02151 0.85553 0.91055 0.91236 0.91253 0.88279 0.87818 0.87032 0.76052 0.87826 0.87829 0.87624 0.92608 0.91144 0.93710 0.93919 0.94202 0.90890 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 8.85 37.16 0.33 0.03 16 2 C -0.11 -0.48 2.69 -91.77 -0.25 -0.73 16 3 H 0.11 0.38 7.82 -51.93 -0.41 -0.03 16 4 C -0.15 -0.82 4.25 -26.74 -0.11 -0.94 16 5 C 0.26 1.30 5.16 37.16 0.19 1.49 16 6 F -0.21 -1.46 16.93 2.25 0.04 -1.43 16 7 F -0.21 -1.56 17.34 2.25 0.04 -1.52 16 8 C 0.52 3.88 7.15 -10.98 -0.08 3.80 16 9 O -0.53 -6.17 15.66 5.55 0.09 -6.08 16 10 N -0.72 -4.30 5.08 -52.23 -0.27 -4.56 16 11 C 0.13 1.17 3.42 -66.30 -0.23 0.94 16 12 H 0.11 1.06 7.73 -51.93 -0.40 0.66 16 13 C -0.17 -1.94 6.59 -26.74 -0.18 -2.11 16 14 C 0.52 8.57 7.42 -10.86 -0.08 8.49 16 15 O -0.51 -11.24 14.61 5.56 0.08 -11.16 16 16 N -0.61 -8.99 3.16 -166.64 -0.53 -9.51 16 17 C 0.10 1.84 4.81 -70.14 -0.34 1.50 16 18 C 0.15 3.78 6.90 -2.83 -0.02 3.76 16 19 N -0.61 -16.27 3.70 -177.87 -0.66 -16.93 16 20 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 21 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -28.09 11.39 55.49 0.63 -27.45 16 24 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.11 2.41 8.44 -2.97 -0.03 2.39 16 29 C 0.10 0.90 7.07 -3.13 -0.02 0.88 16 30 H 0.07 0.07 7.56 -51.93 -0.39 -0.32 16 31 H 0.07 0.05 6.46 -51.93 -0.34 -0.29 16 32 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.71 7.95 -51.93 -0.41 0.30 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.11 0.20 6.34 -51.92 -0.33 -0.13 16 36 H 0.40 1.29 7.78 -40.82 -0.32 0.97 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.08 8.08 -51.93 -0.42 0.66 16 39 H 0.11 1.76 8.14 -51.93 -0.42 1.34 16 40 H 0.06 1.53 5.72 -51.93 -0.30 1.23 16 41 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 42 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.92 7.25 -51.93 -0.38 0.55 16 45 H 0.07 0.51 7.77 -51.93 -0.40 0.11 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 380.31 15.07 5.73 5.73 Total: -1.00 -38.26 380.31 -7.47 -45.73 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.55 Total: -3.08 kcal Atomic # 6 Polarization: 13.67 SS G_CDS: -1.06 Total: 12.61 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.82 Total: -58.46 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.17 Total: -17.24 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.08 Total: -2.95 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.26 -7.47 -45.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108555511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.950 kcal (2) G-P(sol) polarization free energy of solvation -38.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds