Wall clock time and date at job start Wed Apr 1 2020 03:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.50692 * 109.47498 * 120.00253 * 2 1 3 5 5 O 1.21285 * 120.00160 * 119.99903 * 4 2 1 6 6 N 1.34781 * 120.00293 * 300.00389 * 4 2 1 7 7 C 1.46493 * 120.00138 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.88627 * 328.80543 * 7 6 4 9 9 C 1.54626 * 110.97067 * 92.62091 * 7 6 4 10 10 C 1.51280 * 104.19764 * 93.31874 * 9 7 6 11 11 O 1.21282 * 124.94149 * 196.28918 * 10 9 7 12 12 N 1.34415 * 110.11491 * 16.24959 * 10 9 7 13 13 C 1.46506 * 124.34697 * 180.42311 * 12 10 9 14 14 C 1.53951 * 113.73814 * 38.72812 * 13 12 10 15 15 N 1.47811 * 86.03120 * 222.07561 * 14 13 12 16 16 C 1.36936 * 134.45793 * 204.63985 * 15 14 13 17 17 H 1.07998 * 120.00102 * 179.87266 * 16 15 14 18 18 C 1.38817 * 119.99917 * 359.87131 * 16 15 14 19 19 N 1.31621 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00008 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47041 * 90.00475 * 20 18 16 22 22 H 1.48498 * 109.47029 * 209.99937 * 20 18 16 23 23 H 1.48494 * 109.47040 * 330.00019 * 20 18 16 24 24 C 1.47577 * 91.05283 * 24.54997 * 15 14 13 25 25 C 1.46756 * 111.30335 * 0.41378 * 12 10 9 26 26 C 1.53001 * 109.47154 * 240.00738 * 2 1 3 27 27 C 1.52996 * 109.47490 * 64.99556 * 26 2 1 28 28 F 1.39901 * 109.47302 * 185.00165 * 26 2 1 29 29 F 1.39900 * 109.46876 * 304.99692 * 26 2 1 30 30 H 1.08998 * 109.46865 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46826 * 299.99851 * 1 2 3 32 32 H 1.08997 * 109.47065 * 59.99575 * 1 2 3 33 33 H 0.97006 * 119.99491 * 359.97438 * 6 4 2 34 34 H 1.09006 * 110.48886 * 211.99724 * 9 7 6 35 35 H 1.09001 * 110.48509 * 334.64263 * 9 7 6 36 36 H 1.09007 * 112.94155 * 170.30792 * 13 12 10 37 37 H 1.08996 * 113.76793 * 336.34344 * 14 13 12 38 38 H 1.08994 * 113.76878 * 107.74171 * 14 13 12 39 39 H 0.97001 * 119.99803 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.77010 * 221.14697 * 24 15 14 41 41 H 1.09001 * 113.77325 * 89.75044 * 24 15 14 42 42 H 1.09002 * 110.24543 * 223.98555 * 25 12 10 43 43 H 1.08993 * 110.25204 * 101.97957 * 25 12 10 44 44 H 1.09001 * 109.46803 * 60.00500 * 27 26 2 45 45 H 1.08999 * 109.47126 * 180.02562 * 27 26 2 46 46 H 1.09000 * 109.47501 * 300.00420 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4546 7 6 2.1948 -0.9411 3.6506 8 1 2.3040 -2.0095 3.4647 9 6 3.5259 -0.3257 4.1408 10 6 3.1037 0.7026 5.1669 11 8 3.8089 1.5958 5.5861 12 7 1.8329 0.4828 5.5457 13 6 1.1078 1.3011 6.5210 14 6 1.4038 2.8076 6.4081 15 7 1.4473 2.8052 7.8856 16 6 1.2490 3.7545 8.8524 17 1 1.3402 3.4901 9.8956 18 6 0.9308 5.0567 8.4917 19 7 0.8193 5.3788 7.2205 20 14 0.6597 6.3514 9.8106 21 1 1.9497 7.0172 10.1234 22 1 -0.3124 7.3613 9.3204 23 1 0.1261 5.7051 11.0365 24 6 1.7877 1.3693 7.9004 25 6 1.2650 -0.6819 4.8568 26 6 2.0400 -0.7211 -1.2493 27 6 1.6352 0.0691 -2.4953 28 9 3.4343 -0.8215 -1.1933 29 9 1.4822 -2.0027 -1.3083 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1494 0.5388 2.5436 34 1 4.1525 -1.0894 4.6016 35 1 4.0518 0.1532 3.3149 36 1 0.0446 1.0650 6.5669 37 1 2.3623 3.0331 5.9407 38 1 0.5797 3.3873 5.9927 39 1 0.5966 6.2887 6.9684 40 1 1.2694 0.8029 8.6742 41 1 2.8592 1.1715 7.8724 42 1 0.2543 -0.4612 4.5133 43 1 1.2582 -1.5465 5.5204 44 1 2.0699 1.0676 -2.4494 45 1 1.9982 -0.4449 -3.3854 46 1 0.5489 0.1473 -2.5390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108577500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:20 Heat of formation + Delta-G solvation = -104.193348 kcal Electronic energy + Delta-G solvation = -31308.718617 eV Core-core repulsion = 26678.435623 eV Total energy + Delta-G solvation = -4630.282994 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.13224 -47.10154 -40.85920 -39.66468 -37.30517 -36.42947 -35.18058 -33.94121 -32.19559 -30.75909 -29.82894 -27.60823 -27.14764 -25.91077 -24.76814 -23.51475 -22.90993 -21.40059 -20.63347 -20.33898 -18.34373 -17.95817 -17.79815 -17.31125 -16.82304 -16.56554 -16.22074 -16.03587 -15.50214 -15.17812 -14.79291 -14.47696 -14.24852 -13.99736 -13.97604 -13.66762 -13.52760 -13.45884 -13.32463 -13.12769 -13.11728 -12.93648 -12.54042 -12.53616 -12.35437 -12.11640 -11.98457 -11.84062 -11.74330 -11.41942 -11.37716 -11.17604 -10.86995 -10.70790 -10.24890 -10.09264 -10.00889 -9.65726 -9.51010 -9.19101 -8.68934 -8.21922 -6.84261 -5.75257 -3.06822 2.25316 2.61681 2.91560 3.22036 3.32766 3.40588 3.45763 3.46656 3.67336 3.98328 3.99965 4.23459 4.39059 4.46575 4.49162 4.59178 4.64990 4.74027 4.98545 5.00803 5.11541 5.17963 5.21460 5.24453 5.34915 5.38539 5.40834 5.51035 5.54424 5.59667 5.62479 5.71773 5.80284 6.13862 6.26574 6.49735 6.56413 6.84691 7.09410 7.24937 7.46322 7.54864 7.59301 7.83815 7.98458 8.53806 9.05900 9.72052 10.60943 11.42094 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002372 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.962835 B =11800.142486 C =12480.794040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 H 0.128 0.872 4 C 0.522 3.478 5 O -0.519 6.519 6 N -0.716 5.716 7 C 0.134 3.866 8 H 0.118 0.882 9 C -0.167 4.167 10 C 0.512 3.488 11 O -0.509 6.509 12 N -0.610 5.610 13 C 0.098 3.902 14 C 0.154 3.846 15 N -0.605 5.605 16 C -0.219 4.219 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.111 3.889 25 C 0.095 3.905 26 C 0.309 3.691 27 C -0.197 4.197 28 F -0.190 7.190 29 F -0.193 7.193 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.406 0.594 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.070 0.930 39 H 0.253 0.747 40 H 0.042 0.958 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.085 0.915 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.408 -14.687 -19.211 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.181 4.181 3 H 0.146 0.854 4 C 0.307 3.693 5 O -0.394 6.394 6 N -0.369 5.369 7 C 0.028 3.972 8 H 0.136 0.864 9 C -0.209 4.209 10 C 0.298 3.702 11 O -0.383 6.383 12 N -0.345 5.345 13 C -0.004 4.004 14 C 0.028 3.972 15 N -0.331 5.331 16 C -0.347 4.347 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.567 5.567 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C -0.016 4.016 25 C -0.029 4.029 26 C 0.273 3.727 27 C -0.255 4.255 28 F -0.171 7.171 29 F -0.174 7.174 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.241 0.759 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.630 -14.586 -18.866 23.992 hybrid contribution -0.207 1.060 0.792 1.340 sum -2.837 -13.526 -18.074 22.752 Atomic orbital electron populations 1.21850 0.90256 1.04238 1.04242 1.22506 1.00363 1.02678 0.92590 0.85445 1.20137 0.80246 0.84613 0.84328 1.90796 1.36595 1.25534 1.86448 1.45931 1.53892 1.32224 1.04861 1.21872 0.92952 0.98520 0.83814 0.86436 1.22837 0.98392 0.99758 0.99919 1.20688 0.81829 0.85183 0.82482 1.90793 1.56294 1.33132 1.58115 1.48546 1.13636 1.29316 1.43012 1.24060 0.95432 0.93123 0.87802 1.22764 1.00687 0.87777 0.85962 1.45711 1.80419 1.04660 1.02344 1.18993 1.40406 0.88430 0.86883 0.90201 1.24794 1.02267 0.97030 0.96394 1.69825 1.54180 1.18481 1.14218 0.86098 0.77568 0.81464 0.80503 1.21597 1.21637 1.20616 1.22919 0.97464 0.87615 0.93603 1.22345 0.97680 0.90160 0.92727 1.20613 0.75400 0.80602 0.96130 1.22851 1.04670 1.01756 0.96208 1.93059 1.30229 1.96415 1.97401 1.93020 1.84919 1.42094 1.97348 0.90793 0.90384 0.90360 0.75865 0.87111 0.88060 0.87696 0.92739 0.91215 0.93700 0.93965 0.94214 0.89784 0.89665 0.89037 0.89653 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 8.68 37.16 0.32 -0.39 16 2 C -0.16 -1.15 2.41 -91.77 -0.22 -1.37 16 3 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.52 5.33 6.93 -10.99 -0.08 5.26 16 5 O -0.52 -7.34 14.46 5.55 0.08 -7.26 16 6 N -0.72 -6.23 5.01 -52.23 -0.26 -6.49 16 7 C 0.13 1.24 3.53 -66.30 -0.23 1.01 16 8 H 0.12 1.05 7.54 -51.93 -0.39 0.65 16 9 C -0.17 -1.97 6.58 -26.74 -0.18 -2.15 16 10 C 0.51 8.37 7.42 -10.86 -0.08 8.29 16 11 O -0.51 -11.15 14.61 5.56 0.08 -11.07 16 12 N -0.61 -8.80 3.15 -166.65 -0.53 -9.32 16 13 C 0.10 1.79 4.81 -70.15 -0.34 1.46 16 14 C 0.15 3.72 6.90 -2.84 -0.02 3.70 16 15 N -0.60 -16.07 3.70 -177.91 -0.66 -16.73 16 16 C -0.22 -6.32 10.70 -15.06 -0.16 -6.48 16 17 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 19 N -0.92 -27.66 11.39 55.49 0.63 -27.03 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.11 2.38 8.43 -2.97 -0.03 2.36 16 25 C 0.10 0.88 6.97 -3.12 -0.02 0.86 16 26 C 0.31 2.73 1.50 -26.73 -0.04 2.69 16 27 C -0.20 -0.98 9.14 37.16 0.34 -0.64 16 28 F -0.19 -2.30 15.82 2.25 0.04 -2.27 16 29 F -0.19 -2.13 15.75 2.25 0.04 -2.09 16 30 H 0.07 0.43 7.68 -51.93 -0.40 0.03 16 31 H 0.08 0.30 7.56 -51.93 -0.39 -0.09 16 32 H 0.08 0.23 6.56 -51.93 -0.34 -0.11 16 33 H 0.41 2.96 8.08 -40.82 -0.33 2.63 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 36 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 37 H 0.05 1.47 5.74 -51.93 -0.30 1.17 16 38 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 39 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.04 0.91 7.23 -51.93 -0.38 0.54 16 42 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.29 6.57 -51.93 -0.34 -0.05 16 LS Contribution 377.71 15.07 5.69 5.69 Total: -1.00 -38.38 377.71 -7.33 -45.71 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -6.59 Total: -0.83 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: -0.83 Total: 14.25 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.81 Total: -59.57 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.16 Total: -18.33 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.07 Total: -4.36 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.38 -7.33 -45.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108577500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.483 kcal (2) G-P(sol) polarization free energy of solvation -38.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds