Wall clock time and date at job start Wed Apr 1 2020 03:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47198 * 2 1 4 4 C 1.50692 * 109.47498 * 120.00253 * 2 1 3 5 5 O 1.21285 * 120.00160 * 119.99903 * 4 2 1 6 6 N 1.34781 * 120.00293 * 300.00389 * 4 2 1 7 7 C 1.46493 * 120.00138 * 179.97438 * 6 4 2 8 8 H 1.08996 * 110.88627 * 328.80543 * 7 6 4 9 9 C 1.54626 * 110.97067 * 92.62091 * 7 6 4 10 10 C 1.51280 * 104.19764 * 93.31874 * 9 7 6 11 11 O 1.21282 * 124.94149 * 196.28918 * 10 9 7 12 12 N 1.34415 * 110.11491 * 16.24959 * 10 9 7 13 13 C 1.46506 * 124.34697 * 180.42311 * 12 10 9 14 14 C 1.53951 * 113.73814 * 38.72812 * 13 12 10 15 15 N 1.47811 * 86.03120 * 222.07561 * 14 13 12 16 16 C 1.36936 * 134.45793 * 204.63985 * 15 14 13 17 17 H 1.07998 * 120.00102 * 179.87266 * 16 15 14 18 18 C 1.38817 * 119.99917 * 359.87131 * 16 15 14 19 19 N 1.31621 * 119.99889 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00008 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47041 * 90.00475 * 20 18 16 22 22 H 1.48498 * 109.47029 * 209.99937 * 20 18 16 23 23 H 1.48494 * 109.47040 * 330.00019 * 20 18 16 24 24 C 1.47577 * 91.05283 * 24.54997 * 15 14 13 25 25 C 1.46756 * 111.30335 * 0.41378 * 12 10 9 26 26 C 1.53001 * 109.47154 * 240.00738 * 2 1 3 27 27 C 1.52996 * 109.47490 * 64.99556 * 26 2 1 28 28 F 1.39901 * 109.47302 * 185.00165 * 26 2 1 29 29 F 1.39900 * 109.46876 * 304.99692 * 26 2 1 30 30 H 1.08998 * 109.46865 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46826 * 299.99851 * 1 2 3 32 32 H 1.08997 * 109.47065 * 59.99575 * 1 2 3 33 33 H 0.97006 * 119.99491 * 359.97438 * 6 4 2 34 34 H 1.09006 * 110.48886 * 211.99724 * 9 7 6 35 35 H 1.09001 * 110.48509 * 334.64263 * 9 7 6 36 36 H 1.09007 * 112.94155 * 170.30792 * 13 12 10 37 37 H 1.08996 * 113.76793 * 336.34344 * 14 13 12 38 38 H 1.08994 * 113.76878 * 107.74171 * 14 13 12 39 39 H 0.97001 * 119.99803 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.77010 * 221.14697 * 24 15 14 41 41 H 1.09001 * 113.77325 * 89.75044 * 24 15 14 42 42 H 1.09002 * 110.24543 * 223.98555 * 25 12 10 43 43 H 1.08993 * 110.25204 * 101.97957 * 25 12 10 44 44 H 1.09001 * 109.46803 * 60.00500 * 27 26 2 45 45 H 1.08999 * 109.47126 * 180.02562 * 27 26 2 46 46 H 1.09000 * 109.47501 * 300.00420 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.7297 -1.6965 1.1190 6 7 1.7068 -0.2501 2.4546 7 6 2.1948 -0.9411 3.6506 8 1 2.3040 -2.0095 3.4647 9 6 3.5259 -0.3257 4.1408 10 6 3.1037 0.7026 5.1669 11 8 3.8089 1.5958 5.5861 12 7 1.8329 0.4828 5.5457 13 6 1.1078 1.3011 6.5210 14 6 1.4038 2.8076 6.4081 15 7 1.4473 2.8052 7.8856 16 6 1.2490 3.7545 8.8524 17 1 1.3402 3.4901 9.8956 18 6 0.9308 5.0567 8.4917 19 7 0.8193 5.3788 7.2205 20 14 0.6597 6.3514 9.8106 21 1 1.9497 7.0172 10.1234 22 1 -0.3124 7.3613 9.3204 23 1 0.1261 5.7051 11.0365 24 6 1.7877 1.3693 7.9004 25 6 1.2650 -0.6819 4.8568 26 6 2.0400 -0.7211 -1.2493 27 6 1.6352 0.0691 -2.4953 28 9 3.4343 -0.8215 -1.1933 29 9 1.4822 -2.0027 -1.3083 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1494 0.5388 2.5436 34 1 4.1525 -1.0894 4.6016 35 1 4.0518 0.1532 3.3149 36 1 0.0446 1.0650 6.5669 37 1 2.3623 3.0331 5.9407 38 1 0.5797 3.3873 5.9927 39 1 0.5966 6.2887 6.9684 40 1 1.2694 0.8029 8.6742 41 1 2.8592 1.1715 7.8724 42 1 0.2543 -0.4612 4.5133 43 1 1.2582 -1.5465 5.5204 44 1 2.0699 1.0676 -2.4494 45 1 1.9982 -0.4449 -3.3854 46 1 0.5489 0.1473 -2.5390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108577500.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:19 Heat of formation + Delta-G solvation = -132.633146 kcal Electronic energy + Delta-G solvation = -31309.951859 eV Core-core repulsion = 26678.435623 eV Total energy + Delta-G solvation = -4631.516236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.86932 -47.87405 -41.96505 -40.67778 -38.94643 -37.65543 -35.79287 -35.07901 -34.08088 -31.83199 -30.50734 -29.17299 -28.37422 -26.61256 -26.41888 -25.25274 -23.69001 -22.27050 -22.07211 -21.23416 -19.74683 -18.80971 -18.65756 -18.50407 -18.13154 -17.71574 -17.25776 -16.99420 -16.75199 -16.30164 -16.15389 -15.84204 -15.50137 -15.18792 -14.97461 -14.78250 -14.59038 -14.29844 -14.21375 -14.12578 -13.94461 -13.61562 -13.53525 -13.47378 -13.39258 -13.21617 -12.97530 -12.90576 -12.82662 -12.79299 -12.65807 -12.57373 -12.43321 -12.03610 -11.88824 -11.74965 -11.52291 -11.05374 -10.89697 -10.65245 -10.17466 -9.56765 -8.93597 -7.92692 -5.26697 1.43415 1.46710 1.48441 1.55091 1.61206 1.92499 2.00351 2.48527 2.74575 3.15250 3.25220 3.32178 3.42183 3.43185 3.47573 3.49895 3.79512 3.83345 3.91228 4.11846 4.19854 4.23424 4.26205 4.53774 4.60750 4.61968 4.67951 4.75579 4.77882 4.78648 4.80601 4.83460 4.86887 4.92783 5.05964 5.21768 5.22883 5.28785 5.38187 5.48310 5.85894 5.90307 6.26099 6.37864 6.89182 7.09970 7.24749 7.57464 8.53020 9.24414 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019240 B = 0.002372 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.962835 B =11800.142486 C =12480.794040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.156 4.156 3 H 0.148 0.852 4 C 0.518 3.482 5 O -0.563 6.563 6 N -0.708 5.708 7 C 0.144 3.856 8 H 0.132 0.868 9 C -0.156 4.156 10 C 0.503 3.497 11 O -0.575 6.575 12 N -0.605 5.605 13 C 0.139 3.861 14 C 0.151 3.849 15 N -0.636 5.636 16 C -0.237 4.237 17 H 0.084 0.916 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.983 3.017 21 H -0.292 1.292 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.110 3.890 25 C 0.098 3.902 26 C 0.291 3.709 27 C -0.191 4.191 28 F -0.216 7.216 29 F -0.210 7.210 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.415 0.585 34 H 0.129 0.871 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.020 0.980 38 H 0.045 0.955 39 H 0.249 0.751 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 -15.843 -19.522 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 H 0.166 0.834 4 C 0.305 3.695 5 O -0.441 6.441 6 N -0.361 5.361 7 C 0.038 3.962 8 H 0.149 0.851 9 C -0.197 4.197 10 C 0.291 3.709 11 O -0.454 6.454 12 N -0.338 5.338 13 C 0.035 3.965 14 C 0.025 3.975 15 N -0.363 5.363 16 C -0.366 4.366 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.810 3.190 21 H -0.219 1.219 22 H -0.215 1.215 23 H -0.188 1.188 24 C -0.016 4.016 25 C -0.024 4.024 26 C 0.255 3.745 27 C -0.248 4.248 28 F -0.197 7.197 29 F -0.191 7.191 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.252 0.748 34 H 0.147 0.853 35 H 0.110 0.890 36 H 0.157 0.843 37 H 0.038 0.962 38 H 0.064 0.936 39 H 0.058 0.942 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.811 -15.801 -19.190 25.320 hybrid contribution 0.532 1.365 0.871 1.704 sum -4.279 -14.436 -18.319 23.713 Atomic orbital electron populations 1.21901 0.88081 1.04128 1.06102 1.22605 1.02024 1.02884 0.90272 0.83402 1.20691 0.79387 0.84094 0.85367 1.90777 1.38607 1.27589 1.87099 1.45917 1.53440 1.32277 1.04457 1.21855 0.91362 0.98972 0.84015 0.85064 1.22788 1.00063 0.98679 0.98211 1.21479 0.81892 0.84888 0.82592 1.90763 1.58157 1.36037 1.60472 1.48473 1.13055 1.30141 1.42152 1.23367 0.96849 0.89684 0.86605 1.22566 0.98016 0.92128 0.84796 1.46157 1.80612 1.06495 1.02997 1.19418 1.39798 0.89528 0.87834 0.89862 1.25693 1.02597 0.99143 0.98618 1.70022 1.55355 1.18501 1.16131 0.85024 0.77059 0.78518 0.78383 1.21949 1.21482 1.18832 1.23017 0.96882 0.85271 0.96467 1.22699 0.98461 0.88746 0.92523 1.21303 0.74120 0.80374 0.98717 1.22884 1.06205 1.01702 0.94036 1.93004 1.32478 1.96531 1.97652 1.92978 1.85014 1.43578 1.97554 0.91838 0.89067 0.88027 0.74830 0.85332 0.88997 0.84289 0.96250 0.93633 0.94212 0.91453 0.96108 0.86950 0.86638 0.87494 0.89808 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.68 71.98 0.62 -0.34 16 2 C -0.16 -1.95 2.41 -11.54 -0.03 -1.98 16 3 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 4 C 0.52 9.82 6.93 87.65 0.61 10.43 16 5 O -0.56 -15.58 14.46 -3.05 -0.04 -15.63 16 6 N -0.71 -10.64 5.01 -437.54 -2.19 -12.83 16 7 C 0.14 2.26 3.53 46.05 0.16 2.42 16 8 H 0.13 1.90 7.54 -2.39 -0.02 1.88 16 9 C -0.16 -3.48 6.58 30.59 0.20 -3.28 16 10 C 0.50 16.34 7.42 87.90 0.65 16.99 16 11 O -0.57 -26.37 14.61 -3.04 -0.04 -26.41 16 12 N -0.60 -16.24 3.15 -799.74 -2.52 -18.76 16 13 C 0.14 4.84 4.81 46.75 0.22 5.06 16 14 C 0.15 7.48 6.90 86.44 0.60 8.08 16 15 N -0.64 -34.25 3.70 -716.79 -2.65 -36.90 16 16 C -0.24 -13.84 10.70 84.03 0.90 -12.94 16 17 H 0.08 4.63 7.83 -2.91 -0.02 4.61 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.49 16 19 N -0.95 -58.74 11.39 21.65 0.25 -58.49 16 20 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 21 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.11 4.64 8.43 86.48 0.73 5.37 16 25 C 0.10 1.40 6.97 86.84 0.61 2.01 16 26 C 0.29 4.84 1.50 30.59 0.05 4.88 16 27 C -0.19 -1.50 9.14 71.98 0.66 -0.84 16 28 F -0.22 -5.25 15.82 44.97 0.71 -4.54 16 29 F -0.21 -4.55 15.75 44.97 0.71 -3.84 16 30 H 0.06 0.59 7.68 -2.39 -0.02 0.57 16 31 H 0.09 0.38 7.56 -2.39 -0.02 0.37 16 32 H 0.10 0.22 6.56 -2.39 -0.02 0.21 16 33 H 0.41 4.88 8.08 -92.70 -0.75 4.13 16 34 H 0.13 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 36 H 0.14 4.01 8.14 -2.38 -0.02 3.99 16 37 H 0.02 1.11 5.74 -2.39 -0.01 1.10 16 38 H 0.05 2.44 7.16 -2.39 -0.02 2.42 16 39 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 40 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.02 0.98 7.23 -2.39 -0.02 0.96 16 42 H 0.11 1.11 8.08 -2.39 -0.02 1.09 16 43 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.11 0.36 6.57 -2.39 -0.02 0.34 16 Total: -1.00 -89.93 377.71 2.95 -86.99 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.27 Total: 9.38 kcal Atomic # 6 Polarization: 25.92 SS G_CDS: 6.45 Total: 32.36 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -7.12 Total: -126.99 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -0.09 Total: -42.04 kcal Atomic # 9 Polarization: -9.80 SS G_CDS: 1.42 Total: -8.38 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -89.93 2.95 -86.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108577500.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.648 kcal (2) G-P(sol) polarization free energy of solvation -89.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds