Wall clock time and date at job start Wed Apr 1 2020 03:55:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09002 * 109.46630 * 2 1
4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3
5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1
6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1
7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2
8 8 H 1.08998 * 110.86273 * 37.05626 * 7 6 4
9 9 C 1.54625 * 110.96898 * 273.26861 * 7 6 4
10 10 C 1.51288 * 104.19692 * 266.68131 * 9 7 6
11 11 O 1.21278 * 124.94626 * 163.70776 * 10 9 7
12 12 N 1.34422 * 110.11291 * 343.74819 * 10 9 7
13 13 C 1.46494 * 124.35161 * 179.57384 * 12 10 9
14 14 C 1.53942 * 113.74329 * 38.71011 * 13 12 10
15 15 N 1.47808 * 86.04301 * 222.08812 * 14 13 12
16 16 C 1.36933 * 134.45876 * 204.64927 * 15 14 13
17 17 H 1.08001 * 119.99731 * 179.86267 * 16 15 14
18 18 C 1.38811 * 120.00405 * 359.85896 * 16 15 14
19 19 N 1.31618 * 119.99699 * 0.02562 * 18 16 15
20 20 Si 1.86796 * 120.00230 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46998 * 90.00288 * 20 18 16
22 22 H 1.48500 * 109.47106 * 210.00102 * 20 18 16
23 23 H 1.48499 * 109.47305 * 330.00109 * 20 18 16
24 24 C 1.47586 * 91.04736 * 24.54978 * 15 14 13
25 25 C 1.46768 * 111.30091 * 359.59037 * 12 10 9
26 26 C 1.52990 * 109.47358 * 239.99894 * 2 1 3
27 27 C 1.52997 * 109.47420 * 64.99742 * 26 2 1
28 28 F 1.39894 * 109.47597 * 184.99839 * 26 2 1
29 29 F 1.39912 * 109.47081 * 304.99895 * 26 2 1
30 30 H 1.09003 * 109.46582 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46852 * 300.00183 * 1 2 3
32 32 H 1.08993 * 109.46731 * 60.00419 * 1 2 3
33 33 H 0.97001 * 119.99727 * 359.97438 * 6 4 2
34 34 H 1.09002 * 110.48622 * 25.35622 * 9 7 6
35 35 H 1.09001 * 110.49199 * 147.86977 * 9 7 6
36 36 H 1.08996 * 112.94864 * 170.30288 * 13 12 10
37 37 H 1.09006 * 113.77231 * 336.35534 * 14 13 12
38 38 H 1.09004 * 113.76913 * 107.74359 * 14 13 12
39 39 H 0.96995 * 119.99919 * 179.97438 * 19 18 16
40 40 H 1.09005 * 113.76499 * 221.15395 * 24 15 14
41 41 H 1.08996 * 113.76778 * 89.75823 * 24 15 14
42 42 H 1.08997 * 110.24343 * 258.01958 * 25 12 10
43 43 H 1.08998 * 110.24574 * 136.01855 * 25 12 10
44 44 H 1.09002 * 109.47224 * 60.00129 * 27 26 2
45 45 H 1.09001 * 109.47568 * 180.02562 * 27 26 2
46 46 H 1.09006 * 109.47224 * 300.00532 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7103 1.2306
5 8 2.7297 -1.6964 1.1193
6 7 1.7068 -0.2498 2.4546
7 6 2.2001 -0.9368 3.6508
8 1 3.2152 -1.3030 3.4972
9 6 1.2522 -2.0886 4.0580
10 6 0.3153 -1.4594 5.0655
11 8 -0.7430 -1.9335 5.4206
12 7 0.8262 -0.2979 5.5093
13 6 0.1702 0.5737 6.4871
14 6 -0.5441 -0.1898 7.6171
15 7 -1.6377 0.7903 7.4490
16 6 -2.6301 1.2689 8.2621
17 1 -3.3244 2.0074 7.8894
18 6 -2.7438 0.8048 9.5654
19 7 -1.8973 -0.0949 10.0198
20 14 -4.0980 1.4571 10.6744
21 1 -5.3078 0.6081 10.5302
22 1 -3.6385 1.4283 12.0862
23 1 -4.4243 2.8534 10.2884
24 6 -1.2291 1.0477 6.0544
25 6 2.1254 -0.0150 4.8881
26 6 2.0401 -0.7212 -1.2491
27 6 1.6354 0.0688 -2.4952
28 9 3.4343 -0.8216 -1.1932
29 9 1.4823 -2.0030 -1.3080
30 1 -0.3632 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3632 0.5137 -0.8900
33 1 1.1493 0.5390 2.5436
34 1 0.6957 -2.4487 3.1927
35 1 1.8151 -2.9029 4.5142
36 1 0.8160 1.3774 6.8406
37 1 -0.8231 -1.2093 7.3506
38 1 -0.0378 -0.1241 8.5801
39 1 -1.9765 -0.4189 10.9305
40 1 -1.2687 2.0998 5.7721
41 1 -1.7097 0.3926 5.3278
42 1 2.9336 -0.2479 5.5814
43 1 2.1782 1.0302 4.5835
44 1 2.0699 1.0674 -2.4494
45 1 1.9983 -0.4452 -3.3853
46 1 0.5490 0.1471 -2.5389
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001108577501.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:55:24
Heat of formation + Delta-G solvation = -103.590060 kcal
Electronic energy + Delta-G solvation = -31367.059039 eV
Core-core repulsion = 26736.802205 eV
Total energy + Delta-G solvation = -4630.256833 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-49.15662 -47.12765 -40.87416 -39.67026 -37.30103 -36.43394 -35.20497 -33.95653
-32.19716 -30.76347 -29.85736 -27.60635 -27.14165 -25.93043 -24.76852 -23.51419
-22.93448 -21.43444 -20.67885 -20.28695 -18.31621 -17.99878 -17.84639 -17.33464
-16.83961 -16.46479 -16.29254 -16.07132 -15.55753 -15.02428 -14.95111 -14.58635
-14.12726 -14.06771 -13.91233 -13.67255 -13.53920 -13.44213 -13.35416 -13.18554
-13.15411 -12.90123 -12.62197 -12.52904 -12.37942 -12.14018 -11.95272 -11.81324
-11.73856 -11.44050 -11.37368 -11.20069 -10.86771 -10.71263 -10.24041 -10.11129
-10.00588 -9.65822 -9.52261 -9.18883 -8.68165 -8.21461 -6.83952 -5.74182
-3.06431 2.22738 2.59129 2.92615 3.22119 3.29546 3.40947 3.45755
3.47218 3.64141 3.95430 3.96317 4.20865 4.40380 4.44187 4.49375
4.56425 4.59677 4.73002 4.96573 5.00121 5.10970 5.15792 5.21291
5.22586 5.33062 5.37598 5.38697 5.51331 5.55287 5.63139 5.64242
5.69623 5.82999 6.12090 6.24189 6.47433 6.54368 6.84507 7.06234
7.27011 7.47081 7.56775 7.61158 7.81455 7.99161 8.54703 9.06274
9.72639 10.61338 11.43021
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.025141 B = 0.002270 C = 0.002191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1113.455838 B =12330.523700 C =12775.633165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.157 4.157
3 H 0.126 0.874
4 C 0.520 3.480
5 O -0.517 6.517
6 N -0.717 5.717
7 C 0.135 3.865
8 H 0.115 0.885
9 C -0.166 4.166
10 C 0.512 3.488
11 O -0.509 6.509
12 N -0.610 5.610
13 C 0.098 3.902
14 C 0.152 3.848
15 N -0.605 5.605
16 C -0.221 4.221
17 H 0.080 0.920
18 C -0.008 4.008
19 N -0.919 5.919
20 Si 0.913 3.087
21 H -0.289 1.289
22 H -0.290 1.290
23 H -0.281 1.281
24 C 0.112 3.888
25 C 0.096 3.904
26 C 0.309 3.691
27 C -0.197 4.197
28 F -0.191 7.191
29 F -0.191 7.191
30 H 0.074 0.926
31 H 0.077 0.923
32 H 0.078 0.922
33 H 0.404 0.596
34 H 0.100 0.900
35 H 0.111 0.889
36 H 0.105 0.895
37 H 0.056 0.944
38 H 0.070 0.930
39 H 0.254 0.746
40 H 0.041 0.959
41 H 0.039 0.961
42 H 0.087 0.913
43 H 0.083 0.917
44 H 0.090 0.910
45 H 0.085 0.915
46 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.215 3.659 -23.990 27.168
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.179 4.179
3 H 0.144 0.856
4 C 0.305 3.695
5 O -0.392 6.392
6 N -0.370 5.370
7 C 0.029 3.971
8 H 0.133 0.867
9 C -0.208 4.208
10 C 0.299 3.701
11 O -0.383 6.383
12 N -0.345 5.345
13 C -0.004 4.004
14 C 0.027 3.973
15 N -0.331 5.331
16 C -0.349 4.349
17 H 0.098 0.902
18 C -0.205 4.205
19 N -0.566 5.566
20 Si 0.744 3.256
21 H -0.216 1.216
22 H -0.216 1.216
23 H -0.206 1.206
24 C -0.015 4.015
25 C -0.028 4.028
26 C 0.272 3.728
27 C -0.255 4.255
28 F -0.172 7.172
29 F -0.172 7.172
30 H 0.093 0.907
31 H 0.096 0.904
32 H 0.097 0.903
33 H 0.240 0.760
34 H 0.119 0.881
35 H 0.130 0.870
36 H 0.123 0.877
37 H 0.074 0.926
38 H 0.088 0.912
39 H 0.064 0.936
40 H 0.059 0.941
41 H 0.056 0.944
42 H 0.105 0.895
43 H 0.101 0.899
44 H 0.109 0.891
45 H 0.104 0.896
46 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 11.954 2.729 -23.491 26.498
hybrid contribution -0.922 0.573 0.702 1.293
sum 11.032 3.302 -22.788 25.532
Atomic orbital electron populations
1.21868 0.90185 1.04545 1.04174 1.22493 1.00373 1.02441 0.92634
0.85607 1.20143 0.80295 0.84738 0.84308 1.90804 1.36689 1.25226
1.86434 1.45941 1.53802 1.32314 1.04901 1.21871 0.99184 0.92288
0.83710 0.86689 1.22819 0.98666 0.98978 1.00334 1.20685 0.86253
0.81075 0.82100 1.90790 1.22389 1.65269 1.59861 1.48542 1.19900
1.22658 1.43428 1.24055 0.92533 0.93776 0.90044 1.22785 0.86329
0.93702 0.94516 1.45702 1.34369 1.46260 1.06757 1.18971 1.05846
1.18272 0.91819 0.90224 1.24806 0.99329 0.99018 0.97299 1.69826
1.37833 1.32564 1.16329 0.86103 0.81305 0.78223 0.80007 1.21585
1.21621 1.20623 1.22908 0.91350 0.97514 0.89722 1.22326 0.87405
0.99806 0.93291 1.20615 0.75327 0.80736 0.96109 1.22851 1.04739
1.01620 0.96253 1.93048 1.30299 1.96439 1.97408 1.93038 1.84889
1.41976 1.97333 0.90675 0.90399 0.90338 0.76036 0.88139 0.87046
0.87680 0.92597 0.91170 0.93620 0.94083 0.94385 0.89507 0.89855
0.89133 0.89633 0.88872
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.81 8.68 37.16 0.32 -0.49 16
2 C -0.16 -1.05 2.41 -91.77 -0.22 -1.27 16
3 H 0.13 0.47 8.14 -51.93 -0.42 0.05 16
4 C 0.52 5.13 6.93 -10.98 -0.08 5.05 16
5 O -0.52 -7.23 14.56 5.55 0.08 -7.15 16
6 N -0.72 -5.87 5.05 -52.23 -0.26 -6.13 16
7 C 0.13 1.23 3.43 -66.30 -0.23 1.01 16
8 H 0.12 1.00 7.72 -51.93 -0.40 0.60 16
9 C -0.17 -1.99 6.58 -26.74 -0.18 -2.17 16
10 C 0.51 8.43 7.42 -10.86 -0.08 8.35 16
11 O -0.51 -11.20 14.61 5.56 0.08 -11.12 16
12 N -0.61 -8.81 3.15 -166.63 -0.53 -9.34 16
13 C 0.10 1.80 4.81 -70.14 -0.34 1.46 16
14 C 0.15 3.75 6.90 -2.84 -0.02 3.73 16
15 N -0.60 -16.02 3.70 -177.85 -0.66 -16.68 16
16 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16
17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16
18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16
19 N -0.92 -28.02 11.39 55.49 0.63 -27.39 16
20 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16
21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
24 C 0.11 2.34 8.44 -2.96 -0.02 2.32 16
25 C 0.10 0.88 6.96 -3.12 -0.02 0.86 16
26 C 0.31 2.62 1.50 -26.74 -0.04 2.58 16
27 C -0.20 -0.88 9.14 37.16 0.34 -0.54 16
28 F -0.19 -2.15 15.82 2.25 0.04 -2.12 16
29 F -0.19 -2.19 15.75 2.25 0.04 -2.15 16
30 H 0.07 0.55 7.69 -51.93 -0.40 0.15 16
31 H 0.08 0.37 7.56 -51.93 -0.39 -0.02 16
32 H 0.08 0.25 6.56 -51.93 -0.34 -0.09 16
33 H 0.40 2.56 7.99 -40.82 -0.33 2.24 16
34 H 0.10 1.28 8.09 -51.93 -0.42 0.86 16
35 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16
36 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16
37 H 0.06 1.53 5.72 -51.93 -0.30 1.23 16
38 H 0.07 1.88 7.17 -51.93 -0.37 1.51 16
39 H 0.25 7.47 8.31 -40.82 -0.34 7.14 16
40 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16
41 H 0.04 0.85 7.25 -51.93 -0.38 0.47 16
42 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
43 H 0.08 0.60 8.03 -51.93 -0.42 0.19 16
44 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16
45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
46 H 0.09 0.28 6.57 -51.93 -0.34 -0.06 16
LS Contribution 377.79 15.07 5.69 5.69
Total: -1.00 -38.76 377.79 -7.32 -46.08
By element:
Atomic # 1 Polarization: 5.35 SS G_CDS: -6.59 Total: -1.24 kcal
Atomic # 6 Polarization: 14.84 SS G_CDS: -0.82 Total: 14.02 kcal
Atomic # 7 Polarization: -58.72 SS G_CDS: -0.82 Total: -59.54 kcal
Atomic # 8 Polarization: -18.42 SS G_CDS: 0.16 Total: -18.26 kcal
Atomic # 9 Polarization: -4.34 SS G_CDS: 0.07 Total: -4.27 kcal
Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -38.76 -7.32 -46.08 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108577501.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -57.505 kcal
(2) G-P(sol) polarization free energy of solvation -38.762 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.268 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.590 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds