Wall clock time and date at job start Wed Apr 1 2020 03:55:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09002 * 109.46630 * 2 1
4 4 C 1.50703 * 109.47063 * 119.99447 * 2 1 3
5 5 O 1.21283 * 119.99488 * 120.00024 * 4 2 1
6 6 N 1.34777 * 120.00290 * 300.00464 * 4 2 1
7 7 C 1.46498 * 119.99828 * 180.27728 * 6 4 2
8 8 H 1.08998 * 110.86273 * 37.05626 * 7 6 4
9 9 C 1.54625 * 110.96898 * 273.26861 * 7 6 4
10 10 C 1.51288 * 104.19692 * 266.68131 * 9 7 6
11 11 O 1.21278 * 124.94626 * 163.70776 * 10 9 7
12 12 N 1.34422 * 110.11291 * 343.74819 * 10 9 7
13 13 C 1.46494 * 124.35161 * 179.57384 * 12 10 9
14 14 C 1.53942 * 113.74329 * 38.71011 * 13 12 10
15 15 N 1.47808 * 86.04301 * 222.08812 * 14 13 12
16 16 C 1.36933 * 134.45876 * 204.64927 * 15 14 13
17 17 H 1.08001 * 119.99731 * 179.86267 * 16 15 14
18 18 C 1.38811 * 120.00405 * 359.85896 * 16 15 14
19 19 N 1.31618 * 119.99699 * 0.02562 * 18 16 15
20 20 Si 1.86796 * 120.00230 * 180.02562 * 18 16 15
21 21 H 1.48503 * 109.46998 * 90.00288 * 20 18 16
22 22 H 1.48500 * 109.47106 * 210.00102 * 20 18 16
23 23 H 1.48499 * 109.47305 * 330.00109 * 20 18 16
24 24 C 1.47586 * 91.04736 * 24.54978 * 15 14 13
25 25 C 1.46768 * 111.30091 * 359.59037 * 12 10 9
26 26 C 1.52990 * 109.47358 * 239.99894 * 2 1 3
27 27 C 1.52997 * 109.47420 * 64.99742 * 26 2 1
28 28 F 1.39894 * 109.47597 * 184.99839 * 26 2 1
29 29 F 1.39912 * 109.47081 * 304.99895 * 26 2 1
30 30 H 1.09003 * 109.46582 * 180.02562 * 1 2 3
31 31 H 1.09001 * 109.46852 * 300.00183 * 1 2 3
32 32 H 1.08993 * 109.46731 * 60.00419 * 1 2 3
33 33 H 0.97001 * 119.99727 * 359.97438 * 6 4 2
34 34 H 1.09002 * 110.48622 * 25.35622 * 9 7 6
35 35 H 1.09001 * 110.49199 * 147.86977 * 9 7 6
36 36 H 1.08996 * 112.94864 * 170.30288 * 13 12 10
37 37 H 1.09006 * 113.77231 * 336.35534 * 14 13 12
38 38 H 1.09004 * 113.76913 * 107.74359 * 14 13 12
39 39 H 0.96995 * 119.99919 * 179.97438 * 19 18 16
40 40 H 1.09005 * 113.76499 * 221.15395 * 24 15 14
41 41 H 1.08996 * 113.76778 * 89.75823 * 24 15 14
42 42 H 1.08997 * 110.24343 * 258.01958 * 25 12 10
43 43 H 1.08998 * 110.24574 * 136.01855 * 25 12 10
44 44 H 1.09002 * 109.47224 * 60.00129 * 27 26 2
45 45 H 1.09001 * 109.47568 * 180.02562 * 27 26 2
46 46 H 1.09006 * 109.47224 * 300.00532 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7103 1.2306
5 8 2.7297 -1.6964 1.1193
6 7 1.7068 -0.2498 2.4546
7 6 2.2001 -0.9368 3.6508
8 1 3.2152 -1.3030 3.4972
9 6 1.2522 -2.0886 4.0580
10 6 0.3153 -1.4594 5.0655
11 8 -0.7430 -1.9335 5.4206
12 7 0.8262 -0.2979 5.5093
13 6 0.1702 0.5737 6.4871
14 6 -0.5441 -0.1898 7.6171
15 7 -1.6377 0.7903 7.4490
16 6 -2.6301 1.2689 8.2621
17 1 -3.3244 2.0074 7.8894
18 6 -2.7438 0.8048 9.5654
19 7 -1.8973 -0.0949 10.0198
20 14 -4.0980 1.4571 10.6744
21 1 -5.3078 0.6081 10.5302
22 1 -3.6385 1.4283 12.0862
23 1 -4.4243 2.8534 10.2884
24 6 -1.2291 1.0477 6.0544
25 6 2.1254 -0.0150 4.8881
26 6 2.0401 -0.7212 -1.2491
27 6 1.6354 0.0688 -2.4952
28 9 3.4343 -0.8216 -1.1932
29 9 1.4823 -2.0030 -1.3080
30 1 -0.3632 -1.0277 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 -0.3632 0.5137 -0.8900
33 1 1.1493 0.5390 2.5436
34 1 0.6957 -2.4487 3.1927
35 1 1.8151 -2.9029 4.5142
36 1 0.8160 1.3774 6.8406
37 1 -0.8231 -1.2093 7.3506
38 1 -0.0378 -0.1241 8.5801
39 1 -1.9765 -0.4189 10.9305
40 1 -1.2687 2.0998 5.7721
41 1 -1.7097 0.3926 5.3278
42 1 2.9336 -0.2479 5.5814
43 1 2.1782 1.0302 4.5835
44 1 2.0699 1.0674 -2.4494
45 1 1.9983 -0.4452 -3.3853
46 1 0.5490 0.1471 -2.5389
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001108577501.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:55:23
Heat of formation + Delta-G solvation = -132.726047 kcal
Electronic energy + Delta-G solvation = -31368.322470 eV
Core-core repulsion = 26736.802205 eV
Total energy + Delta-G solvation = -4631.520265 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.165 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-49.85853 -47.86613 -41.97158 -40.66781 -38.94045 -37.66017 -35.79867 -35.07735
-34.08530 -31.82619 -30.51747 -29.18333 -28.37133 -26.60353 -26.44709 -25.25313
-23.69234 -22.28525 -22.08554 -21.19366 -19.72738 -18.81458 -18.67283 -18.50839
-18.09396 -17.71865 -17.30126 -16.88885 -16.75709 -16.40265 -16.15569 -15.78127
-15.58017 -15.11334 -14.93021 -14.80045 -14.60959 -14.28340 -14.22116 -14.18596
-13.97147 -13.65983 -13.52941 -13.41694 -13.35372 -13.19224 -12.97649 -12.93721
-12.84510 -12.75809 -12.66987 -12.62123 -12.45561 -12.00738 -11.89124 -11.74801
-11.51847 -11.06836 -10.88561 -10.65388 -10.16410 -9.56791 -8.93925 -7.92655
-5.27110 1.42931 1.46539 1.49871 1.55016 1.60640 1.92300 2.01001
2.48448 2.75156 3.16729 3.25282 3.31949 3.41526 3.43694 3.47768
3.49017 3.79531 3.83677 3.93212 4.11091 4.21236 4.21616 4.26885
4.52953 4.60320 4.62351 4.67714 4.73531 4.76587 4.78224 4.80072
4.81845 4.86417 4.94481 5.06446 5.21892 5.23334 5.26287 5.38581
5.48426 5.85973 5.89880 6.25756 6.40464 6.88052 7.12668 7.24515
7.57830 8.53132 9.24670
Molecular weight = 345.17amu
Principal moments of inertia in cm(-1)
A = 0.025141 B = 0.002270 C = 0.002191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1113.455838 B =12330.523700 C =12775.633165
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.150 4.150
3 H 0.165 0.835
4 C 0.515 3.485
5 O -0.564 6.564
6 N -0.706 5.706
7 C 0.146 3.854
8 H 0.129 0.871
9 C -0.156 4.156
10 C 0.503 3.497
11 O -0.575 6.575
12 N -0.605 5.605
13 C 0.138 3.862
14 C 0.145 3.855
15 N -0.636 5.636
16 C -0.234 4.234
17 H 0.088 0.912
18 C -0.072 4.072
19 N -0.956 5.956
20 Si 0.984 3.016
21 H -0.292 1.292
22 H -0.292 1.292
23 H -0.260 1.260
24 C 0.116 3.884
25 C 0.098 3.902
26 C 0.289 3.711
27 C -0.190 4.190
28 F -0.212 7.212
29 F -0.216 7.216
30 H 0.048 0.952
31 H 0.087 0.913
32 H 0.106 0.894
33 H 0.417 0.583
34 H 0.090 0.910
35 H 0.123 0.877
36 H 0.139 0.861
37 H 0.019 0.981
38 H 0.040 0.960
39 H 0.248 0.752
40 H 0.073 0.927
41 H 0.023 0.977
42 H 0.111 0.889
43 H 0.119 0.881
44 H 0.114 0.886
45 H 0.081 0.919
46 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.179 6.860 -25.715 29.699
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.172 4.172
3 H 0.182 0.818
4 C 0.302 3.698
5 O -0.442 6.442
6 N -0.359 5.359
7 C 0.041 3.959
8 H 0.146 0.854
9 C -0.198 4.198
10 C 0.292 3.708
11 O -0.454 6.454
12 N -0.338 5.338
13 C 0.034 3.966
14 C 0.019 3.981
15 N -0.362 5.362
16 C -0.363 4.363
17 H 0.105 0.895
18 C -0.264 4.264
19 N -0.604 5.604
20 Si 0.811 3.189
21 H -0.219 1.219
22 H -0.218 1.218
23 H -0.185 1.185
24 C -0.010 4.010
25 C -0.024 4.024
26 C 0.253 3.747
27 C -0.248 4.248
28 F -0.193 7.193
29 F -0.197 7.197
30 H 0.068 0.932
31 H 0.106 0.894
32 H 0.124 0.876
33 H 0.254 0.746
34 H 0.109 0.891
35 H 0.141 0.859
36 H 0.157 0.843
37 H 0.037 0.963
38 H 0.058 0.942
39 H 0.057 0.943
40 H 0.091 0.909
41 H 0.041 0.959
42 H 0.128 0.872
43 H 0.137 0.863
44 H 0.133 0.867
45 H 0.100 0.900
46 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 12.954 5.993 -25.275 29.027
hybrid contribution -1.210 -0.484 1.167 1.750
sum 11.744 5.509 -24.108 27.376
Atomic orbital electron populations
1.21906 0.89149 1.03461 1.06055 1.22585 1.00976 1.03580 0.90033
0.81771 1.20754 0.79411 0.84193 0.85449 1.90788 1.38927 1.27348
1.87134 1.45881 1.53442 1.32340 1.04262 1.21809 0.98850 0.91149
0.84117 0.85357 1.22763 0.98186 1.00252 0.98577 1.21452 0.85779
0.81355 0.82190 1.90760 1.25528 1.67002 1.62140 1.48466 1.21556
1.21477 1.42303 1.23367 0.92360 0.92967 0.87863 1.22597 0.87345
0.92596 0.95583 1.46149 1.34403 1.46510 1.09165 1.19445 1.06374
1.18027 0.92438 0.89456 1.25741 1.01936 0.99732 0.99021 1.70045
1.39809 1.34303 1.16269 0.85005 0.77913 0.78387 0.77579 1.21918
1.21806 1.18469 1.22995 0.92308 0.98944 0.86752 1.22682 0.84740
1.01828 0.93122 1.21361 0.74251 0.80223 0.98891 1.22886 1.05992
1.01980 0.93894 1.93000 1.32134 1.96516 1.97653 1.92986 1.85153
1.44029 1.97577 0.93237 0.89447 0.87567 0.74581 0.89125 0.85893
0.84339 0.96291 0.94196 0.94323 0.90852 0.95928 0.87153 0.86280
0.86690 0.89993 0.87120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.22 8.68 71.98 0.62 -0.59 16
2 C -0.15 -1.60 2.41 -11.54 -0.03 -1.63 16
3 H 0.16 0.47 8.14 -2.39 -0.02 0.45 16
4 C 0.52 9.16 6.93 87.66 0.61 9.77 16
5 O -0.56 -15.39 14.56 -3.04 -0.04 -15.44 16
6 N -0.71 -9.45 5.05 -437.54 -2.21 -11.66 16
7 C 0.15 2.25 3.43 46.05 0.16 2.41 16
8 H 0.13 1.82 7.72 -2.39 -0.02 1.80 16
9 C -0.16 -3.61 6.58 30.59 0.20 -3.41 16
10 C 0.50 16.57 7.42 87.90 0.65 17.22 16
11 O -0.57 -26.62 14.61 -3.02 -0.04 -26.67 16
12 N -0.60 -16.27 3.15 -799.69 -2.52 -18.79 16
13 C 0.14 4.81 4.81 46.75 0.22 5.03 16
14 C 0.15 7.37 6.90 86.44 0.60 7.97 16
15 N -0.64 -34.04 3.70 -716.60 -2.65 -36.70 16
16 C -0.23 -13.60 10.70 84.03 0.90 -12.70 16
17 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16
18 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16
19 N -0.96 -60.39 11.39 21.65 0.25 -60.14 16
20 Si 0.98 46.94 29.55 68.60 2.03 48.97 16
21 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16
22 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16
23 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16
24 C 0.12 4.69 8.44 86.49 0.73 5.42 16
25 C 0.10 1.39 6.96 86.83 0.60 1.99 16
26 C 0.29 4.47 1.50 30.59 0.05 4.51 16
27 C -0.19 -1.19 9.14 71.98 0.66 -0.53 16
28 F -0.21 -4.62 15.82 44.97 0.71 -3.91 16
29 F -0.22 -4.97 15.75 44.97 0.71 -4.26 16
30 H 0.05 0.68 7.69 -2.39 -0.02 0.66 16
31 H 0.09 0.56 7.56 -2.39 -0.02 0.54 16
32 H 0.11 0.29 6.56 -2.39 -0.02 0.27 16
33 H 0.42 3.61 7.99 -92.71 -0.74 2.87 16
34 H 0.09 2.32 8.09 -2.39 -0.02 2.30 16
35 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16
36 H 0.14 4.01 8.14 -2.39 -0.02 3.99 16
37 H 0.02 1.12 5.72 -2.38 -0.01 1.10 16
38 H 0.04 2.23 7.17 -2.39 -0.02 2.21 16
39 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16
40 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16
41 H 0.02 1.01 7.25 -2.39 -0.02 0.99 16
42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
43 H 0.12 0.98 8.03 -2.39 -0.02 0.96 16
44 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16
45 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16
46 H 0.11 0.29 6.57 -2.38 -0.02 0.27 16
Total: -1.00 -92.45 377.79 2.94 -89.52
By element:
Atomic # 1 Polarization: 7.10 SS G_CDS: 0.28 Total: 7.38 kcal
Atomic # 6 Polarization: 25.25 SS G_CDS: 6.44 Total: 31.69 kcal
Atomic # 7 Polarization: -120.15 SS G_CDS: -7.14 Total: -127.29 kcal
Atomic # 8 Polarization: -42.02 SS G_CDS: -0.09 Total: -42.11 kcal
Atomic # 9 Polarization: -9.59 SS G_CDS: 1.42 Total: -8.17 kcal
Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal
Total: -92.45 2.94 -89.52 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001108577501.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.208 kcal
(2) G-P(sol) polarization free energy of solvation -92.455 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.518 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.726 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds