Wall clock time and date at job start Wed Apr 1 2020 03:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46927 * 2 1 4 4 C 1.50691 * 109.47259 * 240.00000 * 2 1 3 5 5 O 1.21288 * 120.00036 * 240.00174 * 4 2 1 6 6 N 1.34779 * 120.00310 * 60.00133 * 4 2 1 7 7 C 1.46501 * 120.00090 * 179.72771 * 6 4 2 8 8 H 1.08993 * 110.85576 * 329.06179 * 7 6 4 9 9 C 1.54623 * 110.97090 * 92.89538 * 7 6 4 10 10 C 1.51279 * 104.19913 * 93.31735 * 9 7 6 11 11 O 1.21286 * 124.94896 * 196.25185 * 10 9 7 12 12 N 1.34424 * 110.11430 * 16.25182 * 10 9 7 13 13 C 1.46500 * 124.35243 * 180.42790 * 12 10 9 14 14 C 1.53951 * 113.73880 * 38.71649 * 13 12 10 15 15 N 1.47821 * 86.03273 * 222.08443 * 14 13 12 16 16 C 1.36931 * 134.45289 * 204.64209 * 15 14 13 17 17 H 1.07998 * 119.99913 * 173.35146 * 16 15 14 18 18 C 1.38815 * 120.00139 * 353.35286 * 16 15 14 19 19 N 1.31616 * 120.00002 * 5.06447 * 18 16 15 20 20 Si 1.86803 * 120.00133 * 185.06321 * 18 16 15 21 21 H 1.48497 * 109.47435 * 94.98415 * 20 18 16 22 22 H 1.48500 * 109.47123 * 214.99030 * 20 18 16 23 23 H 1.48506 * 109.46763 * 334.98582 * 20 18 16 24 24 C 1.47578 * 91.05049 * 24.55113 * 15 14 13 25 25 C 1.46764 * 111.29848 * 0.40795 * 12 10 9 26 26 C 1.52999 * 109.47017 * 119.99746 * 2 1 3 27 27 C 1.53002 * 109.47664 * 295.00085 * 26 2 1 28 28 F 1.39899 * 109.47208 * 55.00438 * 26 2 1 29 29 F 1.39906 * 109.47163 * 175.00076 * 26 2 1 30 30 H 1.08997 * 109.47362 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46791 * 300.00065 * 1 2 3 32 32 H 1.09000 * 109.46986 * 59.99556 * 1 2 3 33 33 H 0.96996 * 119.99695 * 0.02562 * 6 4 2 34 34 H 1.08999 * 110.48841 * 211.99768 * 9 7 6 35 35 H 1.09000 * 110.48698 * 334.64180 * 9 7 6 36 36 H 1.09000 * 112.94478 * 170.31081 * 13 12 10 37 37 H 1.08992 * 113.77157 * 336.34731 * 14 13 12 38 38 H 1.09003 * 113.76412 * 107.75047 * 14 13 12 39 39 H 0.97002 * 119.99657 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.76752 * 221.14996 * 24 15 14 41 41 H 1.09000 * 113.76871 * 89.75499 * 24 15 14 42 42 H 1.08993 * 110.24465 * 223.97948 * 25 12 10 43 43 H 1.09003 * 110.24362 * 101.98223 * 25 12 10 44 44 H 1.08999 * 109.47136 * 59.99268 * 27 26 2 45 45 H 1.08993 * 109.47545 * 180.02562 * 27 26 2 46 46 H 1.09005 * 109.46915 * 300.00471 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2499 -2.4545 7 6 2.2001 -0.9371 -3.6507 8 1 3.1705 -1.3961 -3.4620 9 6 1.1782 -1.9857 -4.1475 10 6 0.3531 -1.2422 -5.1746 11 8 -0.7222 -1.6086 -5.5994 12 7 0.9853 -0.1162 -5.5482 13 6 0.4592 0.8428 -6.5227 14 6 -1.0604 1.0654 -6.4149 15 7 -1.0671 1.0276 -7.8926 16 6 -1.8924 1.5335 -8.8611 17 1 -1.6156 1.4540 -9.9020 18 6 -3.0848 2.1487 -8.5050 19 7 -3.3755 2.3350 -7.2350 20 14 -4.2767 2.7122 -9.8284 21 1 -5.2986 1.6589 -10.0552 22 1 -4.9449 3.9645 -9.3921 23 1 -3.5339 2.9610 -11.0901 24 6 0.1734 0.2282 -7.9049 25 6 2.2701 0.0292 -4.8539 26 6 2.0400 -0.7212 1.2493 27 6 1.6352 0.0689 2.4954 28 9 1.4822 -2.0028 1.3082 29 9 3.4343 -0.8216 1.1933 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.1495 0.5389 -2.5435 34 1 1.6912 -2.8297 -4.6087 35 1 0.5483 -2.3242 -3.3248 36 1 1.0362 1.7666 -6.5640 37 1 -1.5942 0.2356 -5.9519 38 1 -1.3338 2.0346 -5.9978 39 1 -4.2085 2.7652 -6.9862 40 1 0.8830 0.5302 -8.6752 41 1 0.0027 -0.8480 -7.8804 42 1 2.3976 1.0547 -4.5073 43 1 3.0901 -0.2508 -5.5153 44 1 0.5489 0.1473 2.5390 45 1 1.9989 -0.4446 3.3853 46 1 2.0698 1.0676 2.4494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108577502.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:27 Heat of formation + Delta-G solvation = -132.906214 kcal Electronic energy + Delta-G solvation = -31371.735299 eV Core-core repulsion = 26740.207222 eV Total energy + Delta-G solvation = -4631.528077 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.86431 -47.86927 -41.96326 -40.67711 -38.94359 -37.65319 -35.80467 -35.07880 -34.08862 -31.82847 -30.52514 -29.17771 -28.35531 -26.61709 -26.45469 -25.24860 -23.68415 -22.29115 -22.07059 -21.21826 -19.73509 -18.80005 -18.68238 -18.51602 -18.12390 -17.72063 -17.23250 -16.98765 -16.75539 -16.33314 -16.05543 -15.90592 -15.55622 -15.11570 -14.95161 -14.82810 -14.61597 -14.28199 -14.19877 -14.12237 -13.97407 -13.68649 -13.53674 -13.45428 -13.36980 -13.20438 -12.98313 -12.94105 -12.85207 -12.73858 -12.69026 -12.62243 -12.43247 -12.05094 -11.87159 -11.75494 -11.51323 -11.06612 -10.89662 -10.64998 -10.17442 -9.56569 -8.92492 -7.94750 -5.27363 1.42650 1.46327 1.47998 1.54585 1.61262 1.92785 2.00773 2.48053 2.74285 3.15828 3.23581 3.32041 3.41866 3.42828 3.48303 3.50331 3.79494 3.83174 3.91990 4.10238 4.20455 4.21314 4.26042 4.53720 4.60573 4.61753 4.68116 4.72332 4.75237 4.77449 4.80682 4.81517 4.86876 4.93576 5.05700 5.18980 5.25097 5.25440 5.38283 5.47962 5.85695 5.89975 6.26237 6.37975 6.88563 7.10064 7.25108 7.56964 8.53288 9.23232 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.019611 B = 0.002403 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.428597 B =11649.363702 C =12420.967765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 H 0.163 0.837 4 C 0.517 3.483 5 O -0.563 6.563 6 N -0.709 5.709 7 C 0.143 3.857 8 H 0.132 0.868 9 C -0.156 4.156 10 C 0.503 3.497 11 O -0.575 6.575 12 N -0.605 5.605 13 C 0.138 3.862 14 C 0.154 3.846 15 N -0.636 5.636 16 C -0.238 4.238 17 H 0.085 0.915 18 C -0.067 4.067 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.294 1.294 22 H -0.289 1.289 23 H -0.263 1.263 24 C 0.109 3.891 25 C 0.098 3.902 26 C 0.291 3.709 27 C -0.191 4.191 28 F -0.215 7.215 29 F -0.211 7.211 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.415 0.585 34 H 0.128 0.872 35 H 0.091 0.909 36 H 0.140 0.860 37 H 0.021 0.979 38 H 0.041 0.959 39 H 0.249 0.751 40 H 0.067 0.933 41 H 0.021 0.979 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.584 -0.080 19.655 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 H 0.180 0.820 4 C 0.304 3.696 5 O -0.441 6.441 6 N -0.361 5.361 7 C 0.038 3.962 8 H 0.150 0.850 9 C -0.197 4.197 10 C 0.292 3.708 11 O -0.454 6.454 12 N -0.338 5.338 13 C 0.034 3.966 14 C 0.028 3.972 15 N -0.363 5.363 16 C -0.366 4.366 17 H 0.103 0.897 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.808 3.192 21 H -0.221 1.221 22 H -0.215 1.215 23 H -0.187 1.187 24 C -0.017 4.017 25 C -0.024 4.024 26 C 0.255 3.745 27 C -0.248 4.248 28 F -0.196 7.196 29 F -0.192 7.192 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.252 0.748 34 H 0.146 0.854 35 H 0.109 0.891 36 H 0.158 0.842 37 H 0.039 0.961 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.038 0.962 42 H 0.131 0.869 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.102 0.898 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 16.285 -0.777 19.319 25.279 hybrid contribution -1.467 -0.063 -0.897 1.720 sum 14.818 -0.840 18.421 23.656 Atomic orbital electron populations 1.21900 0.89279 1.03533 1.05914 1.22583 1.00888 1.03587 0.90248 0.81973 1.20708 0.79352 0.84155 0.85385 1.90779 1.38921 1.27269 1.87102 1.45917 1.53371 1.32342 1.04470 1.21859 0.98327 0.92010 0.84025 0.85029 1.22780 0.98872 0.99909 0.98169 1.21473 0.84970 0.81774 0.82607 1.90769 1.23416 1.70955 1.60248 1.48474 1.21193 1.22034 1.42140 1.23391 0.94534 0.92032 0.86607 1.22509 0.91903 0.98020 0.84736 1.46129 1.28050 1.59121 1.02973 1.19414 0.99224 1.29859 0.88141 0.89722 1.25719 0.99343 1.02338 0.98585 1.70027 1.24828 1.48553 1.16377 0.85044 0.78749 0.76821 0.78627 1.22104 1.21514 1.18705 1.23022 0.88105 0.94134 0.96420 1.22701 0.85296 1.01969 0.92464 1.21320 0.74263 0.80221 0.98740 1.22885 1.05962 1.01981 0.93957 1.92982 1.85147 1.43938 1.97564 1.93002 1.32058 1.96515 1.97645 0.92978 0.87623 0.89819 0.74830 0.85371 0.89064 0.84222 0.96125 0.94052 0.94207 0.91447 0.96168 0.86941 0.86624 0.87198 0.89848 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.68 71.98 0.62 -0.92 16 2 C -0.15 -1.86 2.41 -11.54 -0.03 -1.89 16 3 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 4 C 0.52 9.75 6.93 87.65 0.61 10.36 16 5 O -0.56 -15.54 14.46 -3.05 -0.04 -15.59 16 6 N -0.71 -10.62 5.01 -437.55 -2.19 -12.81 16 7 C 0.14 2.26 3.53 46.05 0.16 2.42 16 8 H 0.13 1.89 7.54 -2.39 -0.02 1.88 16 9 C -0.16 -3.49 6.58 30.58 0.20 -3.29 16 10 C 0.50 16.36 7.42 87.90 0.65 17.01 16 11 O -0.57 -26.42 14.61 -3.05 -0.04 -26.46 16 12 N -0.61 -16.21 3.16 -799.69 -2.52 -18.74 16 13 C 0.14 4.80 4.81 46.75 0.22 5.02 16 14 C 0.15 7.64 6.81 86.44 0.59 8.22 16 15 N -0.64 -34.20 3.70 -716.65 -2.65 -36.85 16 16 C -0.24 -13.86 10.70 84.04 0.90 -12.96 16 17 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 19 N -0.95 -58.84 11.51 21.65 0.25 -58.59 16 20 Si 0.98 46.77 29.56 68.60 2.03 48.80 16 21 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 24 C 0.11 4.62 8.43 86.49 0.73 5.34 16 25 C 0.10 1.40 6.97 86.83 0.61 2.00 16 26 C 0.29 4.77 1.50 30.59 0.05 4.81 16 27 C -0.19 -1.41 9.14 71.98 0.66 -0.75 16 28 F -0.22 -5.06 15.75 44.97 0.71 -4.35 16 29 F -0.21 -4.73 15.82 44.97 0.71 -4.01 16 30 H 0.05 0.79 7.69 -2.39 -0.02 0.77 16 31 H 0.11 0.52 6.57 -2.38 -0.02 0.51 16 32 H 0.08 0.80 7.57 -2.39 -0.02 0.78 16 33 H 0.41 4.87 8.08 -92.71 -0.75 4.12 16 34 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16 36 H 0.14 3.98 8.14 -2.39 -0.02 3.96 16 37 H 0.02 1.18 5.74 -2.39 -0.01 1.17 16 38 H 0.04 2.20 7.37 -2.39 -0.02 2.18 16 39 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.02 0.95 7.23 -2.39 -0.02 0.93 16 42 H 0.11 1.10 8.08 -2.39 -0.02 1.08 16 43 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 0.44 6.56 -2.39 -0.02 0.42 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 Total: -1.00 -90.25 377.94 2.95 -87.31 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: 0.27 Total: 9.34 kcal Atomic # 6 Polarization: 25.51 SS G_CDS: 6.44 Total: 31.95 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -7.12 Total: -126.99 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -0.09 Total: -42.05 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 1.42 Total: -8.36 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -90.25 2.95 -87.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108577502.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.597 kcal (2) G-P(sol) polarization free energy of solvation -90.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds