Wall clock time and date at job start Wed Apr 1 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47235 * 2 1 4 4 C 1.50700 * 109.47163 * 240.00485 * 2 1 3 5 5 O 1.21284 * 120.00106 * 239.99946 * 4 2 1 6 6 N 1.34780 * 120.00376 * 59.99719 * 4 2 1 7 7 C 1.46498 * 120.00120 * 179.97438 * 6 4 2 8 8 C 1.50697 * 109.46808 * 180.02562 * 7 6 4 9 9 C 1.40077 * 126.12547 * 259.69314 * 8 7 6 10 10 N 1.31016 * 108.25362 * 179.97438 * 9 8 7 11 11 N 1.39739 * 108.17958 * 0.52879 * 10 9 8 12 12 C 1.34642 * 126.12642 * 80.00585 * 8 7 6 13 13 C 1.51038 * 127.90959 * 359.43840 * 12 8 7 14 14 N 1.47500 * 106.99646 * 169.56936 * 13 12 8 15 15 C 1.36940 * 121.01095 * 222.97374 * 14 13 12 16 16 H 1.07997 * 119.99804 * 155.89846 * 15 14 13 17 17 C 1.38810 * 119.99946 * 335.89703 * 15 14 13 18 18 N 1.31618 * 120.00304 * 344.45339 * 17 15 14 19 19 Si 1.86805 * 120.00031 * 164.45703 * 17 15 14 20 20 H 1.48496 * 109.47207 * 59.99794 * 19 17 15 21 21 H 1.48493 * 109.47062 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46703 * 299.99959 * 19 17 15 23 23 C 1.47080 * 117.97538 * 42.98075 * 14 13 12 24 24 C 1.46555 * 127.32819 * 179.23915 * 11 10 9 25 25 N 1.46492 * 109.47329 * 120.00425 * 2 1 3 26 26 C 1.34438 * 126.82404 * 35.02273 * 25 2 1 27 27 N 1.30833 * 108.07552 * 180.02562 * 26 25 2 28 28 C 1.33235 * 109.83151 * 0.02562 * 27 26 25 29 29 N 1.30712 * 108.95054 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.46869 * 299.99935 * 1 2 3 31 31 H 1.09002 * 109.46700 * 59.99729 * 1 2 3 32 32 H 1.08995 * 109.46872 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99433 * 0.02562 * 6 4 2 34 34 H 1.08992 * 109.47399 * 300.00353 * 7 6 4 35 35 H 1.09001 * 109.46979 * 60.00634 * 7 6 4 36 36 H 1.07995 * 125.87372 * 0.08642 * 9 8 7 37 37 H 1.08994 * 109.94970 * 288.94447 * 13 12 8 38 38 H 1.09003 * 109.94391 * 50.20251 * 13 12 8 39 39 H 0.97005 * 120.00418 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.51341 * 176.51418 * 23 14 13 41 41 H 1.09005 * 109.51160 * 56.36891 * 23 14 13 42 42 H 1.08995 * 109.50587 * 281.39322 * 24 11 10 43 43 H 1.08996 * 109.50762 * 41.52881 * 24 11 10 44 44 H 1.07997 * 125.95770 * 0.02562 * 26 25 2 45 45 H 1.08007 * 125.52767 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4547 7 6 2.1956 -0.9400 -3.6508 8 6 1.6936 -0.2293 -4.8812 9 6 0.6052 -0.6175 -5.6729 10 7 0.4785 0.2473 -6.6489 11 7 1.4878 1.2047 -6.5168 12 6 2.2146 0.8893 -5.4198 13 6 3.3946 1.6936 -4.9279 14 7 3.7244 2.6668 -5.9861 15 6 5.0243 2.9074 -6.3431 16 1 5.2519 3.2918 -7.3263 17 6 6.0494 2.6573 -5.4412 18 7 5.7762 2.4871 -4.1649 19 14 7.8168 2.5623 -6.0387 20 1 8.1975 3.8535 -6.6655 21 1 8.7141 2.2863 -4.8882 22 1 7.9435 1.4707 -7.0377 23 6 2.6145 3.3709 -6.6461 24 6 1.7440 2.3524 -7.3915 25 7 2.0184 -0.6907 1.1960 26 6 1.4561 -1.7523 1.7995 27 7 2.1935 -2.0696 2.8326 28 6 3.2299 -1.2370 2.9210 29 7 3.1665 -0.3747 1.9408 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1493 0.5391 -2.5436 34 1 3.2855 -0.9396 -3.6507 35 1 1.8326 -1.9678 -3.6511 36 1 -0.0228 -1.4801 -5.5062 37 1 3.1304 2.2180 -4.0096 38 1 4.2450 1.0353 -4.7499 39 1 6.4926 2.3127 -3.5346 40 1 3.0137 4.0960 -7.3553 41 1 2.0135 3.8864 -5.8968 42 1 2.2621 2.0168 -8.2898 43 1 0.7979 2.8174 -7.6683 44 1 0.5533 -2.2553 1.4861 45 1 3.9984 -1.2698 3.6793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128312168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:32 Heat of formation + Delta-G solvation = 169.337468 kcal Electronic energy + Delta-G solvation = -30308.105266 eV Core-core repulsion = 26172.665395 eV Total energy + Delta-G solvation = -4135.439870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.15757 -41.09745 -39.63900 -36.39241 -35.20695 -34.96236 -33.07892 -31.55636 -31.30297 -30.33424 -30.16432 -28.77599 -26.29007 -25.55970 -24.65894 -23.56933 -22.23427 -21.90997 -21.77978 -20.35964 -20.13556 -18.60415 -17.81598 -17.18885 -16.78656 -16.19589 -15.80001 -15.60770 -15.24685 -15.14986 -14.88537 -14.49252 -14.36614 -14.02610 -13.84961 -13.72230 -13.40221 -13.28202 -13.12412 -12.89152 -12.65387 -12.53393 -12.44412 -11.78495 -11.71651 -11.64659 -11.37521 -11.05110 -10.91837 -10.79688 -10.46309 -10.27076 -10.26527 -10.13176 -10.06062 -9.78326 -9.55740 -8.99722 -8.94896 -8.63687 -8.03851 -7.14710 -6.06473 -3.49593 1.54540 2.05868 2.33079 2.51337 2.81975 2.91889 2.96771 3.26585 3.34346 3.35051 3.50283 4.16560 4.24019 4.27392 4.46174 4.60535 4.73940 4.85957 4.99884 5.04922 5.08347 5.13983 5.27104 5.29200 5.40173 5.46415 5.51599 5.53461 5.63270 5.75849 6.00039 6.14616 6.15770 6.27128 6.34467 6.40037 6.42149 6.47741 6.68314 6.82035 6.98033 7.06050 7.48219 7.50498 7.54113 8.03409 8.03818 8.14037 8.15044 8.86560 9.49139 10.00979 11.04429 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003346 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.648248 B = 8365.938138 C =10367.453321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.136 3.864 3 H 0.134 0.866 4 C 0.502 3.498 5 O -0.527 6.527 6 N -0.709 5.709 7 C 0.211 3.789 8 C -0.291 4.291 9 C 0.057 3.943 10 N -0.317 5.317 11 N -0.357 5.357 12 C 0.121 3.879 13 C 0.230 3.770 14 N -0.596 5.596 15 C -0.267 4.267 16 H 0.073 0.927 17 C 0.010 3.990 18 N -0.903 5.903 19 Si 0.909 3.091 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.282 1.282 23 C 0.129 3.871 24 C 0.113 3.887 25 N -0.359 5.359 26 C 0.266 3.734 27 N -0.549 5.549 28 C 0.196 3.804 29 N -0.308 5.308 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.401 0.599 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.176 0.824 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.261 0.739 40 H 0.085 0.915 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.213 0.787 45 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.593 -3.222 6.148 15.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.029 3.971 3 H 0.151 0.849 4 C 0.285 3.715 5 O -0.402 6.402 6 N -0.361 5.361 7 C 0.088 3.912 8 C -0.303 4.303 9 C -0.130 4.130 10 N -0.137 5.137 11 N -0.138 5.138 12 C -0.011 4.011 13 C 0.103 3.897 14 N -0.318 5.318 15 C -0.396 4.396 16 H 0.091 0.909 17 C -0.189 4.189 18 N -0.546 5.546 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.208 1.208 23 C 0.001 3.999 24 C -0.011 4.011 25 N -0.149 5.149 26 C -0.031 4.031 27 N -0.276 5.276 28 C -0.107 4.107 29 N -0.135 5.135 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.235 0.765 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.193 0.807 37 H 0.074 0.926 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.054 0.946 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.230 0.770 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -13.136 -3.144 5.227 14.484 hybrid contribution 0.959 0.026 0.030 0.960 sum -12.177 -3.118 5.258 13.625 Atomic orbital electron populations 1.22173 0.90200 1.04406 1.05083 1.21256 0.96208 0.98416 0.81220 0.84878 1.20448 0.81191 0.85223 0.84641 1.90776 1.36928 1.26122 1.86420 1.46144 1.53010 1.31937 1.05023 1.19343 0.98957 0.93898 0.78995 1.19380 1.04625 1.02106 1.04222 1.23675 0.97405 0.98684 0.93225 1.77184 1.10937 1.01812 1.23728 1.48519 1.22185 1.21668 1.21404 1.22617 0.95276 0.95541 0.87617 1.19930 0.90027 0.89684 0.90021 1.44188 1.01928 1.43515 1.42210 1.19112 0.81174 1.42202 0.97090 0.90880 1.25031 0.98633 1.00516 0.94749 1.69911 1.32428 1.51556 1.00724 0.86275 0.83853 0.78276 0.77832 1.20647 1.21296 1.20795 1.21290 0.89969 0.92320 0.96360 1.22583 1.00507 0.84695 0.93276 1.50047 1.18960 1.24400 1.21519 1.25839 0.99221 0.88055 0.89961 1.70541 1.07315 1.28750 1.20984 1.25975 0.97286 0.90237 0.97217 1.78123 1.02500 1.25123 1.07705 0.90073 0.88815 0.90730 0.76456 0.90677 0.91084 0.80720 0.92604 0.87305 0.92902 0.89683 0.94584 0.90523 0.90142 0.77022 0.76736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.75 37.16 0.33 -0.61 16 2 C 0.14 1.42 3.77 -69.09 -0.26 1.16 16 3 H 0.13 1.34 8.14 -51.93 -0.42 0.91 16 4 C 0.50 6.82 7.22 -10.98 -0.08 6.74 16 5 O -0.53 -9.55 16.42 5.55 0.09 -9.46 16 6 N -0.71 -8.82 5.44 -61.48 -0.33 -9.16 16 7 C 0.21 3.09 5.95 -5.20 -0.03 3.06 16 8 C -0.29 -4.61 5.46 -105.21 -0.57 -5.18 16 9 C 0.06 0.85 11.97 -17.21 -0.21 0.64 16 10 N -0.32 -5.47 12.61 30.70 0.39 -5.08 16 11 N -0.36 -6.44 4.03 -56.90 -0.23 -6.67 16 12 C 0.12 2.25 6.71 -82.16 -0.55 1.70 16 13 C 0.23 4.95 5.11 -4.48 -0.02 4.93 16 14 N -0.60 -13.39 3.01 -172.93 -0.52 -13.91 16 15 C -0.27 -6.69 9.67 -15.06 -0.15 -6.83 16 16 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 17 C 0.01 0.27 5.00 -17.43 -0.09 0.18 16 18 N -0.90 -24.25 11.07 55.49 0.61 -23.63 16 19 Si 0.91 20.66 29.58 -169.99 -5.03 15.63 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.13 2.30 6.50 -3.56 -0.02 2.27 16 24 C 0.11 1.82 7.45 -3.85 -0.03 1.79 16 25 N -0.36 -4.58 3.04 -57.24 -0.17 -4.76 16 26 C 0.27 3.07 11.77 -90.65 -1.07 2.00 16 27 N -0.55 -7.32 11.19 -15.83 -0.18 -7.50 16 28 C 0.20 2.56 13.03 -91.82 -1.20 1.36 16 29 N -0.31 -4.62 12.70 29.29 0.37 -4.25 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.42 7.56 -51.93 -0.39 0.02 16 32 H 0.07 0.38 7.22 -51.93 -0.38 0.00 16 33 H 0.40 4.18 7.88 -40.82 -0.32 3.86 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.11 2.68 6.46 -51.93 -0.34 2.35 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 40 H 0.08 1.40 7.94 -51.93 -0.41 0.99 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.21 1.54 7.32 -52.49 -0.38 1.15 16 45 H 0.22 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -34.51 380.60 -9.21 -43.72 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.00 Total: 6.12 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: -3.95 Total: 13.21 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -0.06 Total: -74.96 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.51 -9.21 -43.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128312168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.057 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds