Wall clock time and date at job start Wed Apr 1 2020 03:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.47235 * 2 1 4 4 C 1.50700 * 109.47163 * 240.00485 * 2 1 3 5 5 O 1.21284 * 120.00106 * 239.99946 * 4 2 1 6 6 N 1.34780 * 120.00376 * 59.99719 * 4 2 1 7 7 C 1.46498 * 120.00120 * 179.97438 * 6 4 2 8 8 C 1.50697 * 109.46808 * 180.02562 * 7 6 4 9 9 C 1.40077 * 126.12547 * 259.69314 * 8 7 6 10 10 N 1.31016 * 108.25362 * 179.97438 * 9 8 7 11 11 N 1.39739 * 108.17958 * 0.52879 * 10 9 8 12 12 C 1.34642 * 126.12642 * 80.00585 * 8 7 6 13 13 C 1.51038 * 127.90959 * 359.43840 * 12 8 7 14 14 N 1.47500 * 106.99646 * 169.56936 * 13 12 8 15 15 C 1.36940 * 121.01095 * 222.97374 * 14 13 12 16 16 H 1.07997 * 119.99804 * 155.89846 * 15 14 13 17 17 C 1.38810 * 119.99946 * 335.89703 * 15 14 13 18 18 N 1.31618 * 120.00304 * 344.45339 * 17 15 14 19 19 Si 1.86805 * 120.00031 * 164.45703 * 17 15 14 20 20 H 1.48496 * 109.47207 * 59.99794 * 19 17 15 21 21 H 1.48493 * 109.47062 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.46703 * 299.99959 * 19 17 15 23 23 C 1.47080 * 117.97538 * 42.98075 * 14 13 12 24 24 C 1.46555 * 127.32819 * 179.23915 * 11 10 9 25 25 N 1.46492 * 109.47329 * 120.00425 * 2 1 3 26 26 C 1.34438 * 126.82404 * 35.02273 * 25 2 1 27 27 N 1.30833 * 108.07552 * 180.02562 * 26 25 2 28 28 C 1.33235 * 109.83151 * 0.02562 * 27 26 25 29 29 N 1.30712 * 108.95054 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.46869 * 299.99935 * 1 2 3 31 31 H 1.09002 * 109.46700 * 59.99729 * 1 2 3 32 32 H 1.08995 * 109.46872 * 179.97438 * 1 2 3 33 33 H 0.97002 * 119.99433 * 0.02562 * 6 4 2 34 34 H 1.08992 * 109.47399 * 300.00353 * 7 6 4 35 35 H 1.09001 * 109.46979 * 60.00634 * 7 6 4 36 36 H 1.07995 * 125.87372 * 0.08642 * 9 8 7 37 37 H 1.08994 * 109.94970 * 288.94447 * 13 12 8 38 38 H 1.09003 * 109.94391 * 50.20251 * 13 12 8 39 39 H 0.97005 * 120.00418 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.51341 * 176.51418 * 23 14 13 41 41 H 1.09005 * 109.51160 * 56.36891 * 23 14 13 42 42 H 1.08995 * 109.50587 * 281.39322 * 24 11 10 43 43 H 1.08996 * 109.50762 * 41.52881 * 24 11 10 44 44 H 1.07997 * 125.95770 * 0.02562 * 26 25 2 45 45 H 1.08007 * 125.52767 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4547 7 6 2.1956 -0.9400 -3.6508 8 6 1.6936 -0.2293 -4.8812 9 6 0.6052 -0.6175 -5.6729 10 7 0.4785 0.2473 -6.6489 11 7 1.4878 1.2047 -6.5168 12 6 2.2146 0.8893 -5.4198 13 6 3.3946 1.6936 -4.9279 14 7 3.7244 2.6668 -5.9861 15 6 5.0243 2.9074 -6.3431 16 1 5.2519 3.2918 -7.3263 17 6 6.0494 2.6573 -5.4412 18 7 5.7762 2.4871 -4.1649 19 14 7.8168 2.5623 -6.0387 20 1 8.1975 3.8535 -6.6655 21 1 8.7141 2.2863 -4.8882 22 1 7.9435 1.4707 -7.0377 23 6 2.6145 3.3709 -6.6461 24 6 1.7440 2.3524 -7.3915 25 7 2.0184 -0.6907 1.1960 26 6 1.4561 -1.7523 1.7995 27 7 2.1935 -2.0696 2.8326 28 6 3.2299 -1.2370 2.9210 29 7 3.1665 -0.3747 1.9408 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1493 0.5391 -2.5436 34 1 3.2855 -0.9396 -3.6507 35 1 1.8326 -1.9678 -3.6511 36 1 -0.0228 -1.4801 -5.5062 37 1 3.1304 2.2180 -4.0096 38 1 4.2450 1.0353 -4.7499 39 1 6.4926 2.3127 -3.5346 40 1 3.0137 4.0960 -7.3553 41 1 2.0135 3.8864 -5.8968 42 1 2.2621 2.0168 -8.2898 43 1 0.7979 2.8174 -7.6683 44 1 0.5533 -2.2553 1.4861 45 1 3.9984 -1.2698 3.6793 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128312168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:30 Heat of formation + Delta-G solvation = 146.536037 kcal Electronic energy + Delta-G solvation = -30309.094010 eV Core-core repulsion = 26172.665395 eV Total energy + Delta-G solvation = -4136.428614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.09413 -42.43678 -40.76040 -37.98308 -36.27345 -36.02994 -34.65708 -32.99401 -32.33960 -31.84489 -31.16941 -30.02364 -27.85804 -26.70251 -25.75004 -25.11648 -23.44287 -23.10447 -22.80035 -21.62694 -21.23466 -20.03056 -18.91508 -18.55811 -18.12885 -17.57836 -16.95397 -16.76150 -16.50292 -16.40075 -16.15636 -15.73640 -15.52888 -15.27538 -15.19968 -15.00582 -14.79651 -14.68350 -14.21973 -14.00879 -13.61573 -13.38261 -13.36069 -13.26097 -13.09036 -12.97058 -12.73756 -12.63703 -12.45902 -12.39148 -12.05299 -11.94282 -11.63975 -11.49661 -11.04139 -10.79806 -10.78674 -10.57920 -10.14413 -10.06928 -9.40050 -8.96951 -8.01724 -5.44700 0.60343 0.92834 1.21796 1.43320 1.44033 1.46858 1.52115 1.59700 1.67963 2.01584 2.41003 2.43390 3.18106 3.39522 3.42302 3.47224 3.59403 3.63304 3.80363 3.82090 3.97377 4.12308 4.18249 4.24026 4.29935 4.37378 4.45572 4.63002 4.69205 4.74482 4.78139 4.86567 4.92578 5.01017 5.07558 5.22586 5.25096 5.34283 5.35489 5.47621 5.56047 5.76273 5.83856 6.08025 6.17741 6.45556 6.80852 6.97107 7.08066 7.11146 7.63819 8.14008 9.06938 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010222 B = 0.003346 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.648248 B = 8365.938138 C =10367.453321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.133 0.867 4 C 0.503 3.497 5 O -0.577 6.577 6 N -0.697 5.697 7 C 0.218 3.782 8 C -0.274 4.274 9 C 0.071 3.929 10 N -0.326 5.326 11 N -0.366 5.366 12 C 0.096 3.904 13 C 0.249 3.751 14 N -0.616 5.616 15 C -0.268 4.268 16 H 0.079 0.921 17 C -0.041 4.041 18 N -0.930 5.930 19 Si 0.962 3.038 20 H -0.270 1.270 21 H -0.298 1.298 22 H -0.282 1.282 23 C 0.128 3.872 24 C 0.117 3.883 25 N -0.367 5.367 26 C 0.271 3.729 27 N -0.573 5.573 28 C 0.193 3.807 29 N -0.356 5.356 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.413 0.587 34 H 0.038 0.962 35 H 0.089 0.911 36 H 0.218 0.782 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.251 0.749 40 H 0.098 0.902 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.253 0.747 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.390 -3.546 5.312 17.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.032 3.968 3 H 0.151 0.849 4 C 0.287 3.713 5 O -0.456 6.456 6 N -0.349 5.349 7 C 0.094 3.906 8 C -0.286 4.286 9 C -0.116 4.116 10 N -0.146 5.146 11 N -0.148 5.148 12 C -0.035 4.035 13 C 0.122 3.878 14 N -0.340 5.340 15 C -0.397 4.397 16 H 0.097 0.903 17 C -0.237 4.237 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.195 1.195 21 H -0.224 1.224 22 H -0.208 1.208 23 C 0.001 3.999 24 C -0.006 4.006 25 N -0.157 5.157 26 C -0.025 4.025 27 N -0.301 5.301 28 C -0.110 4.110 29 N -0.183 5.183 30 H 0.114 0.886 31 H 0.131 0.869 32 H 0.107 0.893 33 H 0.250 0.750 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.234 0.766 37 H 0.054 0.946 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.116 0.884 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.131 0.869 44 H 0.269 0.731 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -15.982 -3.416 4.345 16.910 hybrid contribution 1.764 0.101 0.243 1.784 sum -14.217 -3.314 4.588 15.303 Atomic orbital electron populations 1.22251 0.86112 1.05917 1.06727 1.21464 0.99104 0.97315 0.78907 0.84939 1.21028 0.80112 0.84556 0.85570 1.90752 1.39144 1.28546 1.87146 1.45966 1.52601 1.32002 1.04307 1.19161 0.96883 0.95015 0.79529 1.19470 1.04286 1.00773 1.04094 1.24274 0.96796 0.98977 0.91524 1.77186 1.10739 1.02119 1.24538 1.48682 1.22379 1.22396 1.21324 1.22202 0.95336 0.96771 0.89236 1.19348 0.89844 0.89073 0.89573 1.44427 1.02397 1.44569 1.42565 1.19454 0.82589 1.40580 0.97090 0.90298 1.25676 1.01694 1.01387 0.94921 1.70066 1.32518 1.53444 1.01518 0.85415 0.80247 0.78447 0.76822 1.19501 1.22444 1.20830 1.21456 0.88928 0.92918 0.96560 1.22539 1.01633 0.84008 0.92370 1.50193 1.18561 1.25046 1.21896 1.26636 0.99696 0.87215 0.88966 1.70562 1.07925 1.29382 1.22193 1.26554 0.97666 0.89532 0.97201 1.78042 1.04346 1.26859 1.09036 0.88612 0.86930 0.89282 0.75019 0.94367 0.89253 0.76566 0.94553 0.91335 0.93982 0.88396 0.93914 0.90673 0.86867 0.73150 0.74285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.75 71.98 0.63 -0.69 16 2 C 0.14 2.75 3.77 44.25 0.17 2.92 16 3 H 0.13 2.63 8.14 -2.38 -0.02 2.61 16 4 C 0.50 13.50 7.22 87.66 0.63 14.14 16 5 O -0.58 -21.26 16.42 -3.04 -0.05 -21.31 16 6 N -0.70 -16.86 5.44 -466.80 -2.54 -19.40 16 7 C 0.22 6.31 5.95 85.63 0.51 6.82 16 8 C -0.27 -8.31 5.46 -20.24 -0.11 -8.42 16 9 C 0.07 1.87 11.97 85.26 1.02 2.89 16 10 N -0.33 -10.27 12.61 -56.79 -0.72 -10.99 16 11 N -0.37 -12.57 4.03 -333.93 -1.35 -13.91 16 12 C 0.10 3.53 6.71 41.30 0.28 3.80 16 13 C 0.25 11.07 5.11 85.55 0.44 11.51 16 14 N -0.62 -27.99 3.01 -701.02 -2.11 -30.10 16 15 C -0.27 -13.55 9.67 84.03 0.81 -12.74 16 16 H 0.08 3.81 7.88 -2.91 -0.02 3.79 16 17 C -0.04 -2.14 5.00 84.86 0.42 -1.71 16 18 N -0.93 -52.17 11.07 21.65 0.24 -51.94 16 19 Si 0.96 43.39 29.58 68.60 2.03 45.42 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 C 0.13 4.42 6.50 86.38 0.56 4.98 16 24 C 0.12 3.53 7.45 86.48 0.64 4.18 16 25 N -0.37 -9.17 3.04 -335.02 -1.02 -10.18 16 26 C 0.27 5.87 11.77 180.36 2.12 7.99 16 27 N -0.57 -14.90 11.19 -204.00 -2.28 -17.19 16 28 C 0.19 5.06 13.03 180.77 2.36 7.42 16 29 N -0.36 -10.85 12.70 -61.24 -0.78 -11.63 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.59 7.56 -2.39 -0.02 0.57 16 32 H 0.09 0.56 7.22 -2.39 -0.02 0.54 16 33 H 0.41 8.03 7.88 -92.71 -0.73 7.30 16 34 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.22 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 3.59 6.46 -2.39 -0.02 3.58 16 39 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 40 H 0.10 3.08 7.94 -2.38 -0.02 3.06 16 41 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.25 2.92 7.32 -2.91 -0.02 2.89 16 45 H 0.24 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -78.17 380.60 2.22 -75.96 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.30 Total: 22.19 kcal Atomic # 6 Polarization: 32.59 SS G_CDS: 10.48 Total: 43.08 kcal Atomic # 7 Polarization: -154.79 SS G_CDS: -10.55 Total: -165.34 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -78.17 2.22 -75.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128312168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.494 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds