Wall clock time and date at job start Wed Apr 1 2020 03:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47254 * 2 1 4 4 C 1.53004 * 109.46933 * 239.99779 * 2 1 3 5 5 C 1.52992 * 109.46949 * 175.00500 * 4 2 1 6 6 H 1.09004 * 109.47167 * 304.99971 * 5 4 2 7 7 C 1.53008 * 109.46962 * 185.00262 * 5 4 2 8 8 N 1.46496 * 109.47408 * 65.00142 * 5 4 2 9 9 C 1.34781 * 120.00305 * 205.00084 * 8 5 4 10 10 O 1.21539 * 119.99638 * 359.97438 * 9 8 5 11 11 C 1.48014 * 120.00123 * 180.02562 * 9 8 5 12 12 C 1.39422 * 119.64940 * 180.02562 * 11 9 8 13 13 C 1.38366 * 119.13440 * 179.76494 * 12 11 9 14 14 C 1.39272 * 118.43521 * 0.45343 * 13 12 11 15 15 N 1.39983 * 120.38802 * 179.80243 * 14 13 12 16 16 C 1.35134 * 127.39242 * 184.71915 * 15 14 13 17 17 N 1.30713 * 107.26633 * 180.02562 * 16 15 14 18 18 N 1.28416 * 110.65349 * 0.02562 * 17 16 15 19 19 N 1.28943 * 110.22003 * 359.97438 * 18 17 16 20 20 C 1.39237 * 119.21765 * 359.52532 * 14 13 12 21 21 N 1.31396 * 120.80780 * 0.25445 * 20 14 13 22 22 N 1.46503 * 109.46625 * 120.00264 * 2 1 3 23 23 C 1.36936 * 119.99653 * 274.99646 * 22 2 1 24 24 H 1.08003 * 120.00151 * 359.97438 * 23 22 2 25 25 C 1.38812 * 119.99805 * 180.02562 * 23 22 2 26 26 N 1.31618 * 119.99993 * 359.97438 * 25 23 22 27 27 Si 1.86802 * 119.99970 * 179.97438 * 25 23 22 28 28 H 1.48504 * 109.47019 * 89.99694 * 27 25 23 29 29 H 1.48504 * 109.47036 * 209.99317 * 27 25 23 30 30 H 1.48492 * 109.47217 * 329.99780 * 27 25 23 31 31 H 1.09005 * 109.47210 * 59.99587 * 1 2 3 32 32 H 1.08995 * 109.47992 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47050 * 300.00716 * 1 2 3 34 34 H 1.08998 * 109.47145 * 55.00265 * 4 2 1 35 35 H 1.09000 * 109.46925 * 295.00478 * 4 2 1 36 36 H 1.09002 * 109.46831 * 299.99314 * 7 5 4 37 37 H 1.08994 * 109.47157 * 59.99712 * 7 5 4 38 38 H 1.09002 * 109.46929 * 180.02562 * 7 5 4 39 39 H 0.96995 * 120.00337 * 24.99485 * 8 5 4 40 40 H 1.08008 * 120.43582 * 0.02562 * 12 11 9 41 41 H 1.07999 * 120.78442 * 180.23253 * 13 12 11 42 42 H 1.08004 * 126.36403 * 359.77512 * 16 15 14 43 43 H 1.08001 * 119.59681 * 180.27477 * 20 14 13 44 44 H 0.96996 * 119.99802 * 94.99677 * 22 2 1 45 45 H 0.96998 * 120.00202 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5647 -0.6135 -1.3136 6 1 3.8571 0.4356 -1.2677 7 6 4.0644 -1.2252 -2.6241 8 7 4.1535 -1.3344 -0.1824 9 6 5.3747 -0.9914 0.2734 10 8 5.9875 -0.0842 -0.2544 11 6 5.9698 -1.7202 1.4160 12 6 7.2332 -1.3589 1.8819 13 6 7.7773 -2.0441 2.9538 14 6 7.0400 -3.0802 3.5217 15 7 7.5531 -3.8033 4.6050 16 6 7.0046 -4.8832 5.2043 17 7 7.8099 -5.2420 6.1694 18 7 8.8295 -4.4631 6.2218 19 7 8.7491 -3.5614 5.3035 20 6 5.7842 -3.3845 3.0030 21 7 5.2946 -2.7108 1.9867 22 7 2.0182 -0.6907 1.1962 23 6 2.1490 -0.0075 2.3758 24 1 1.8926 1.0405 2.4241 25 6 2.6121 -0.6618 3.5090 26 7 2.9250 -1.9389 3.4500 27 14 2.7912 0.2702 5.1180 28 1 1.5237 0.1792 5.8865 29 1 3.8960 -0.3231 5.9134 30 1 3.0961 1.6953 4.8332 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8899 34 1 1.6054 -0.2618 -2.1370 35 1 1.7515 -1.7716 -1.2056 36 1 3.7721 -2.2743 -2.6699 37 1 3.6263 -0.6889 -3.4657 38 1 5.1508 -1.1488 -2.6697 39 1 3.6646 -2.0586 0.2387 40 1 7.7784 -0.5518 1.4149 41 1 8.7523 -1.7840 3.3387 42 1 6.0720 -5.3586 4.9383 43 1 5.2053 -4.1839 3.4416 44 1 2.2488 -1.6318 1.1526 45 1 3.2483 -2.3962 4.2419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135077669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:01 Heat of formation + Delta-G solvation = 145.762206 kcal Electronic energy + Delta-G solvation = -30975.868351 eV Core-core repulsion = 26839.406181 eV Total energy + Delta-G solvation = -4136.462170 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.25980 -40.46563 -38.98515 -36.90105 -35.46011 -34.31096 -32.70080 -32.37665 -31.96805 -31.09838 -29.96082 -28.61268 -26.43052 -25.75664 -24.51962 -23.77015 -23.18440 -22.17946 -21.38000 -20.32289 -19.88766 -18.74295 -17.65716 -17.30384 -16.71548 -16.58983 -16.22200 -15.67491 -14.89338 -14.81293 -14.71909 -14.08755 -13.94171 -13.77350 -13.64058 -13.61032 -13.14530 -12.98782 -12.78898 -12.74288 -12.35119 -12.23340 -12.00609 -11.84623 -11.80967 -11.73030 -11.14450 -11.09512 -10.96111 -10.83168 -10.59065 -10.46087 -10.36069 -10.01525 -9.89440 -9.79686 -9.76339 -9.28265 -9.06821 -8.81458 -8.43880 -7.03384 -5.89263 -3.09733 0.05568 1.22575 1.40386 1.66484 2.17464 3.08033 3.31146 3.37222 3.40991 3.54203 3.93540 4.08971 4.15086 4.43840 4.47507 4.56918 4.74663 4.91965 5.04058 5.11195 5.26357 5.32457 5.36622 5.43946 5.45450 5.60632 5.64900 5.78576 5.81952 5.88142 5.92741 5.98264 6.08202 6.15731 6.16965 6.28470 6.33487 6.47282 6.52644 6.58504 6.77578 6.96827 7.04996 7.58312 7.81888 8.14886 8.26041 8.29422 8.70876 9.38369 9.93479 10.29380 11.28174 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.004061 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.107657 B = 6893.924961 C = 8391.050635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.167 3.833 3 H 0.048 0.952 4 C -0.134 4.134 5 C 0.147 3.853 6 H 0.085 0.915 7 C -0.162 4.162 8 N -0.673 5.673 9 C 0.580 3.420 10 O -0.555 6.555 11 C 0.098 3.902 12 C -0.104 4.104 13 C -0.072 4.072 14 C 0.068 3.932 15 N -0.313 5.313 16 C 0.229 3.771 17 N -0.333 5.333 18 N -0.041 5.041 19 N -0.082 5.082 20 C 0.132 3.868 21 N -0.369 5.369 22 N -0.713 5.713 23 C -0.219 4.219 24 H 0.066 0.934 25 C -0.010 4.010 26 N -0.900 5.900 27 Si 0.891 3.109 28 H -0.291 1.291 29 H -0.296 1.296 30 H -0.284 1.284 31 H 0.036 0.964 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.416 0.584 40 H 0.154 0.846 41 H 0.150 0.850 42 H 0.242 0.758 43 H 0.166 0.834 44 H 0.382 0.618 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.208 -4.652 -7.854 9.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.057 3.943 3 H 0.066 0.934 4 C -0.172 4.172 5 C 0.042 3.958 6 H 0.103 0.897 7 C -0.221 4.221 8 N -0.324 5.324 9 C 0.365 3.635 10 O -0.434 6.434 11 C -0.042 4.042 12 C -0.126 4.126 13 C -0.099 4.099 14 C -0.028 4.028 15 N -0.103 5.103 16 C -0.068 4.068 17 N -0.183 5.183 18 N -0.036 5.036 19 N -0.068 5.068 20 C -0.033 4.033 21 N -0.079 5.079 22 N -0.356 5.356 23 C -0.350 4.350 24 H 0.084 0.916 25 C -0.206 4.206 26 N -0.548 5.548 27 Si 0.723 3.277 28 H -0.218 1.218 29 H -0.222 1.222 30 H -0.210 1.210 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.256 0.744 40 H 0.172 0.828 41 H 0.167 0.833 42 H 0.258 0.742 43 H 0.183 0.817 44 H 0.217 0.783 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.932 -3.999 -7.621 9.462 hybrid contribution -0.226 0.305 1.248 1.305 sum 3.705 -3.694 -6.373 8.246 Atomic orbital electron populations 1.22411 0.99164 1.00786 0.99971 1.20316 0.91795 0.95746 0.86406 0.93388 1.22217 0.93778 1.01788 0.99460 1.20894 0.92699 0.97333 0.84864 0.89721 1.22207 1.01800 1.00957 0.97120 1.45845 1.16996 1.37007 1.32592 1.17537 0.81859 0.82533 0.81615 1.90725 1.62546 1.30789 1.59366 1.21364 0.91688 0.94745 0.96429 1.21990 0.95642 0.99696 0.95259 1.21227 1.00507 0.93120 0.95091 1.18993 0.96766 0.97267 0.89750 1.48891 1.16456 1.21381 1.23577 1.27522 1.01084 0.87534 0.90675 1.74455 1.01155 1.23685 1.18977 1.78033 1.14536 0.98836 1.12196 1.82637 0.99681 1.19755 1.04697 1.22550 0.88787 0.98811 0.93112 1.67810 1.29426 1.03935 1.06681 1.42531 1.77305 1.10432 1.05305 1.19207 1.34876 0.93728 0.87188 0.91565 1.24561 1.02724 0.96102 0.97249 1.69706 1.49534 1.07797 1.27736 0.86432 0.77210 0.79296 0.84792 1.21825 1.22213 1.21006 0.94529 0.93539 0.92892 0.90637 0.91578 0.92671 0.91962 0.92345 0.74443 0.82812 0.83253 0.74197 0.81745 0.78263 0.94175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.49 37.16 0.35 -2.25 16 2 C 0.17 2.87 2.89 -67.93 -0.20 2.67 16 3 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 4 C -0.13 -1.82 4.43 -26.73 -0.12 -1.94 16 5 C 0.15 2.15 2.57 -67.93 -0.17 1.98 16 6 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 7 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 8 N -0.67 -11.20 3.79 -54.70 -0.21 -11.41 16 9 C 0.58 10.60 7.77 -12.25 -0.10 10.51 16 10 O -0.56 -11.09 15.98 5.33 0.09 -11.01 16 11 C 0.10 1.67 6.75 -83.01 -0.56 1.11 16 12 C -0.10 -1.57 9.62 -39.09 -0.38 -1.94 16 13 C -0.07 -0.99 9.81 -39.15 -0.38 -1.37 16 14 C 0.07 0.95 6.73 -83.38 -0.56 0.39 16 15 N -0.31 -4.29 3.85 -11.59 -0.04 -4.33 16 16 C 0.23 2.68 12.16 -90.11 -1.10 1.58 16 17 N -0.33 -4.78 12.15 29.65 0.36 -4.42 16 18 N -0.04 -0.65 13.39 60.35 0.81 0.16 16 19 N -0.08 -1.27 13.41 60.35 0.81 -0.46 16 20 C 0.13 1.88 10.59 -17.37 -0.18 1.70 16 21 N -0.37 -6.13 8.51 -9.66 -0.08 -6.21 16 22 N -0.71 -14.87 3.84 -53.42 -0.21 -15.07 16 23 C -0.22 -5.33 9.93 -15.06 -0.15 -5.48 16 24 H 0.07 1.67 7.83 -52.48 -0.41 1.26 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 26 N -0.90 -21.56 11.97 55.49 0.66 -20.89 16 27 Si 0.89 21.07 29.55 -169.99 -5.02 16.05 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 30 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.42 7.17 5.83 -40.82 -0.24 6.93 16 40 H 0.15 2.14 7.63 -52.48 -0.40 1.74 16 41 H 0.15 1.82 7.85 -52.49 -0.41 1.41 16 42 H 0.24 1.61 7.23 -52.48 -0.38 1.23 16 43 H 0.17 1.89 6.92 -52.49 -0.36 1.53 16 44 H 0.38 8.16 5.70 -40.82 -0.23 7.93 16 45 H 0.25 5.91 8.31 -40.82 -0.34 5.57 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -28.93 383.58 -6.11 -35.04 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.77 Total: 11.77 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -3.29 Total: 5.01 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: 2.10 Total: -62.64 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.93 -6.11 -35.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135077669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.802 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds