Wall clock time and date at job start Wed Apr 1 2020 03:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47686 * 2 1 4 4 C 1.53001 * 109.46959 * 239.99773 * 2 1 3 5 5 C 1.52995 * 109.47409 * 175.00331 * 4 2 1 6 6 H 1.09000 * 109.46991 * 305.00558 * 5 4 2 7 7 C 1.52993 * 109.47629 * 185.00429 * 5 4 2 8 8 N 1.46504 * 109.47185 * 65.00148 * 5 4 2 9 9 C 1.36931 * 119.99950 * 205.00162 * 8 5 4 10 10 H 1.07998 * 120.00754 * 0.02562 * 9 8 5 11 11 C 1.38812 * 119.99781 * 179.97438 * 9 8 5 12 12 N 1.31626 * 120.00106 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00249 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.46837 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47300 * 120.00296 * 13 11 9 16 16 H 1.48504 * 109.47331 * 240.00333 * 13 11 9 17 17 N 1.46500 * 109.46741 * 120.00691 * 2 1 3 18 18 C 1.34783 * 119.99727 * 274.99192 * 17 2 1 19 19 O 1.21537 * 119.99976 * 0.02562 * 18 17 2 20 20 C 1.48015 * 119.99917 * 180.02562 * 18 17 2 21 21 C 1.39423 * 119.64998 * 179.97438 * 20 18 17 22 22 C 1.38377 * 119.13187 * 179.72300 * 21 20 18 23 23 C 1.39267 * 118.43663 * 0.55910 * 22 21 20 24 24 N 1.39982 * 120.38990 * 179.71037 * 23 22 21 25 25 C 1.35131 * 127.39422 * 184.72435 * 24 23 22 26 26 N 1.30717 * 107.26584 * 180.26403 * 25 24 23 27 27 N 1.28422 * 110.65322 * 359.59375 * 26 25 24 28 28 N 1.28953 * 110.21798 * 0.41619 * 27 26 25 29 29 C 1.39240 * 119.21982 * 359.43949 * 23 22 21 30 30 N 1.31399 * 120.80493 * 0.29844 * 29 23 22 31 31 H 1.08997 * 109.47686 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47020 * 299.99798 * 1 2 3 33 33 H 1.08997 * 109.47143 * 59.99251 * 1 2 3 34 34 H 1.08994 * 109.47456 * 295.00708 * 4 2 1 35 35 H 1.09009 * 109.46965 * 55.00481 * 4 2 1 36 36 H 1.08991 * 109.47845 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.47040 * 300.00099 * 7 5 4 38 38 H 1.09007 * 109.47412 * 59.99668 * 7 5 4 39 39 H 0.97003 * 119.99224 * 25.00197 * 8 5 4 40 40 H 0.96993 * 120.00149 * 179.97438 * 12 11 9 41 41 H 0.96996 * 120.00563 * 95.00112 * 17 2 1 42 42 H 1.08006 * 120.43426 * 0.02562 * 21 20 18 43 43 H 1.07998 * 120.78243 * 180.29136 * 22 21 20 44 44 H 1.08002 * 126.36454 * 359.97438 * 25 24 23 45 45 H 1.08003 * 119.59646 * 180.27163 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6135 -1.3137 6 1 3.8571 0.4356 -1.2678 7 6 4.0644 -1.2251 -2.6240 8 7 4.1536 -1.3345 -0.1825 9 6 5.3943 -0.9859 0.2805 10 1 5.9386 -0.1793 -0.1879 11 6 5.9519 -1.6687 1.3527 12 7 5.2884 -2.6515 1.9241 13 14 7.6441 -1.1929 1.9849 14 1 8.1750 -0.0652 1.1775 15 1 7.5426 -0.7781 3.4071 16 1 8.5597 -2.3567 1.8728 17 7 2.0183 -0.6908 1.1961 18 6 2.1471 -0.0184 2.3572 19 8 1.8577 1.1607 2.4119 20 6 2.6409 -0.7162 3.5655 21 6 2.7718 -0.0135 4.7626 22 6 3.2290 -0.6778 5.8871 23 6 3.5532 -2.0275 5.7741 24 7 4.0252 -2.7378 6.8841 25 6 4.4621 -4.0161 6.9152 26 7 4.8035 -4.2795 8.1492 27 7 4.6205 -3.2530 8.8988 28 7 4.1460 -2.2742 8.2061 29 6 3.3968 -2.6635 4.5453 30 7 2.9549 -2.0045 3.4979 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.7515 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1370 36 1 5.1506 -1.1479 -2.6702 37 1 3.7721 -2.2742 -2.6700 38 1 3.6263 -0.6887 -3.4658 39 1 3.6645 -2.0587 0.2385 40 1 5.6782 -3.1288 2.6730 41 1 2.2490 -1.6319 1.1525 42 1 2.5151 1.0344 4.8128 43 1 3.3361 -0.1607 6.8292 44 1 4.5145 -4.6955 6.0773 45 1 3.6422 -3.7111 4.4519 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135077671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:08 Heat of formation + Delta-G solvation = 145.618090 kcal Electronic energy + Delta-G solvation = -30979.272759 eV Core-core repulsion = 26842.804339 eV Total energy + Delta-G solvation = -4136.468420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -43.25796 -40.46349 -38.98531 -36.90330 -35.45879 -34.31366 -32.70007 -32.37693 -31.96689 -31.09873 -29.96075 -28.61666 -26.43207 -25.75518 -24.51800 -23.77684 -23.18253 -22.17756 -21.37972 -20.32465 -19.88949 -18.74049 -17.65709 -17.30833 -16.71648 -16.58907 -16.21365 -15.67444 -14.89707 -14.81625 -14.71607 -14.08628 -13.94449 -13.77451 -13.66418 -13.58727 -13.13542 -12.99654 -12.78053 -12.76571 -12.35364 -12.23528 -12.00095 -11.84796 -11.80798 -11.73196 -11.14393 -11.10508 -10.97317 -10.83749 -10.58900 -10.46568 -10.33458 -10.01019 -9.89756 -9.79381 -9.76887 -9.28147 -9.07891 -8.81359 -8.44028 -7.03669 -5.89787 -3.10255 0.05661 1.22922 1.40772 1.66044 2.17426 3.07993 3.29960 3.37523 3.40536 3.54281 3.93862 4.11994 4.13048 4.43756 4.47108 4.57005 4.74843 4.91980 5.04009 5.11390 5.26444 5.32298 5.36690 5.43778 5.45101 5.60492 5.65009 5.78587 5.81982 5.88077 5.92651 5.98263 6.08033 6.15774 6.16822 6.28433 6.33328 6.47143 6.52435 6.58630 6.77384 6.96590 7.04833 7.58376 7.81966 8.14835 8.25549 8.29349 8.70804 9.37865 9.93031 10.28956 11.27754 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.011489 B = 0.004066 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.508856 B = 6884.150051 C = 8402.004533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.085 0.915 4 C -0.134 4.134 5 C 0.167 3.833 6 H 0.048 0.952 7 C -0.163 4.163 8 N -0.713 5.713 9 C -0.218 4.218 10 H 0.067 0.933 11 C -0.010 4.010 12 N -0.900 5.900 13 Si 0.890 3.110 14 H -0.282 1.282 15 H -0.296 1.296 16 H -0.292 1.292 17 N -0.673 5.673 18 C 0.580 3.420 19 O -0.555 6.555 20 C 0.097 3.903 21 C -0.104 4.104 22 C -0.072 4.072 23 C 0.069 3.931 24 N -0.313 5.313 25 C 0.229 3.771 26 N -0.333 5.333 27 N -0.041 5.041 28 N -0.083 5.083 29 C 0.132 3.868 30 N -0.369 5.369 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.036 0.964 39 H 0.382 0.618 40 H 0.248 0.752 41 H 0.416 0.584 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.242 0.758 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -0.654 0.255 9.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.103 0.897 4 C -0.172 4.172 5 C 0.057 3.943 6 H 0.066 0.934 7 C -0.223 4.223 8 N -0.356 5.356 9 C -0.349 4.349 10 H 0.085 0.915 11 C -0.207 4.207 12 N -0.548 5.548 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.224 1.224 16 H -0.220 1.220 17 N -0.325 5.325 18 C 0.365 3.635 19 O -0.434 6.434 20 C -0.042 4.042 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.027 4.027 24 N -0.103 5.103 25 C -0.067 4.067 26 N -0.183 5.183 27 N -0.036 5.036 28 N -0.068 5.068 29 C -0.033 4.033 30 N -0.078 5.078 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.217 0.783 40 H 0.058 0.942 41 H 0.256 0.744 42 H 0.172 0.828 43 H 0.167 0.833 44 H 0.258 0.742 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.054 0.106 0.841 9.094 hybrid contribution 1.342 -0.111 0.278 1.375 sum -7.713 -0.005 1.119 7.793 Atomic orbital electron populations 1.22206 0.96009 1.01804 1.02072 1.20894 0.92703 0.97770 0.84417 0.89720 1.22219 0.97749 1.00753 0.96525 1.20315 0.89763 0.95923 0.88272 0.93385 1.22407 1.01519 1.00402 0.97996 1.42543 1.18581 1.39949 1.34521 1.19257 0.93017 1.12564 1.10057 0.91507 1.24565 0.97927 0.99065 0.99136 1.69725 1.36568 1.23630 1.24860 0.86365 0.85277 0.77682 0.78446 1.20718 1.22393 1.21954 1.45848 1.63569 1.15075 1.07960 1.17538 0.77480 0.85706 0.82812 1.90724 1.52325 1.15208 1.85171 1.21364 0.97920 0.90848 0.94114 1.21990 0.97399 1.01984 0.91173 1.21226 0.97058 0.91417 1.00267 1.18991 1.04873 0.93361 0.85509 1.48893 1.42846 1.10387 1.08203 1.27544 0.94211 0.85944 0.99043 1.74464 1.22529 1.21243 1.00042 1.78036 1.08685 0.94191 1.22687 1.82636 1.20046 1.19459 0.84697 1.22553 0.95600 1.00531 0.84598 1.67810 1.05749 1.07555 1.26712 0.92667 0.92346 0.91962 0.91575 0.90635 0.92886 0.93534 0.94530 0.78257 0.94244 0.74442 0.82824 0.83263 0.74165 0.81741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 2 C 0.15 2.15 2.57 -67.93 -0.17 1.98 16 3 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.13 -1.82 4.43 -26.73 -0.12 -1.94 16 5 C 0.17 2.86 2.89 -67.93 -0.20 2.66 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 C -0.16 -2.59 9.49 37.15 0.35 -2.24 16 8 N -0.71 -14.82 3.84 -53.43 -0.21 -15.02 16 9 C -0.22 -5.28 9.93 -15.06 -0.15 -5.43 16 10 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 11 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 12 N -0.90 -21.39 11.96 55.49 0.66 -20.72 16 13 Si 0.89 20.90 29.55 -169.99 -5.02 15.88 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.67 -11.20 3.79 -54.69 -0.21 -11.41 16 18 C 0.58 10.61 7.77 -12.25 -0.10 10.52 16 19 O -0.56 -11.10 15.98 5.33 0.09 -11.01 16 20 C 0.10 1.67 6.75 -83.01 -0.56 1.11 16 21 C -0.10 -1.57 9.62 -39.09 -0.38 -1.94 16 22 C -0.07 -1.00 9.81 -39.15 -0.38 -1.38 16 23 C 0.07 0.96 6.73 -83.38 -0.56 0.40 16 24 N -0.31 -4.29 3.85 -11.59 -0.04 -4.34 16 25 C 0.23 2.71 12.16 -90.11 -1.10 1.62 16 26 N -0.33 -4.79 12.15 29.65 0.36 -4.43 16 27 N -0.04 -0.65 13.39 60.35 0.81 0.16 16 28 N -0.08 -1.27 13.41 60.35 0.81 -0.46 16 29 C 0.13 1.88 10.58 -17.36 -0.18 1.70 16 30 N -0.37 -6.13 8.50 -9.66 -0.08 -6.21 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.38 8.14 5.70 -40.82 -0.23 7.91 16 40 H 0.25 5.80 8.31 -40.82 -0.34 5.46 16 41 H 0.42 7.17 5.83 -40.82 -0.24 6.93 16 42 H 0.15 2.14 7.63 -52.48 -0.40 1.74 16 43 H 0.15 1.83 7.85 -52.49 -0.41 1.42 16 44 H 0.24 1.70 7.23 -52.49 -0.38 1.32 16 45 H 0.17 1.89 6.92 -52.48 -0.36 1.53 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -28.71 383.54 -6.11 -34.82 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.77 Total: 11.89 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -3.29 Total: 5.08 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 2.10 Total: -62.44 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.71 -6.11 -34.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135077671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.438 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds